UniProt ID Gene ID Gene symbol Gene name Chromosome Specise Cleft types Developmental stage Evidence Reference Q9Y620 25788 RAD54B DNA repair and recombination protein RAD54B 8 9606 reviewed 28232668 P10276 5914 RARA Retinoic acid receptor alpha 17 9606 CPO,CL/P reviewed 1361101;11810291;24265584 O94762 9400 RECQL5 ATP-dependent DNA helicase Q5 17 9606 reviewed 26449438 P00797 5972 REN Renin 1 9606 reviewed 2309700;8454288 P35251 5981 RFC1 Replication factor C subunit 1 4 9606 reviewed 24749799;24942095;14755461 Q8IUC4 85415 RHPN2 Rhophilin-2 19 9606 reviewed 27033726 P62854 6231 RPS26 40S ribosomal protein S26 12 9606 reviewed 28232668 Q13950 860 RUNX2 Runt-related transcription factor 2 6 9606 CL/P reviewed 23909516;22241686;18357615 P34925 6259 RYK Tyrosine-protein kinase RYK 3 9606 CPO,CL/P reviewed 16681403 Q9UPW6 23314 SATB2 DNA-binding protein SATB2 2 9606 reviewed 26868259;16641627;16953426 O15027 9919 SEC16A Protein transport protein Sec16A 9 9606 reviewed 26449438 P08185 866 SERPINA6 Corticosteroid-binding globulin 14 9606 reviewed 22072571 P31645 6532 SLC6A4 Sodium-dependent serotonin transporter 17 9606 reviewed 22072571 Q15797 4086 SMAD1 Mothers against decapentaplegic homolog 1 4 9606 reviewed 14755461 Q15796 4087 SMAD2 Mothers against decapentaplegic homolog 2 18 9606 reviewed 17564975 P48436 6662 SOX9 Transcription factor SOX-9 17 9606 reviewed 23826492 O43609 10252 SPRY1 Protein sprouty homolog 1 4 9606 reviewed 28232668 Q9NY57 55351 STK32B Serine/threonine-protein kinase 32B 4 9606 reviewed 20087401 Q9P2W9 53407 STX18 Syntaxin-18 4 9606 reviewed 20087401 Q6ZMZ3 161176 SYNE3 Nesprin-3 14 9606 reviewed 26449438 Q53T94 9014 TAF1B TATA box-binding protein-associated factor RNA polymerase I subunit B 2 9606 reviewed 28232668 Q9HCD6 26115 TANC2 Protein TANC2 17 9606 reviewed 27033726 Q9Y458 50945 TBX22 T-box transcription factor TBX22 X 9606 CPO,CL/P reviewed 21248356;25918826 P20062 6948 TCN2 Transcobalamin-2 22 9606 reviewed 16470748 Q8IYF3 56159 TEX11 Testis-expressed protein 11 X 9606 reviewed 26449438 P01135 7039 TGFA Protransforming growth factor alpha 2 9606 CPO,CL/P reviewed 23940636;1361101;1673285;14981713;14755461;1352354;19444471;10918043;25191068;9345615;16953426;26605011;23029012;24805869;7825598;2570526;9684776 P01137 7040 TGFB1 Transforming growth factor beta-1 proprotein 9606 reviewed 26954016 P61812 7042 TGFB2 Transforming growth factor beta-2 proprotein 1 9606 reviewed 8454288;10918043 P10600 7043 TGFB3 Transforming growth factor beta-3 proprotein 14 9606 CPO,CL/P reviewed 11396489;18480962;22143699;20082468;9683588;14659070;20170386;16247549;23023602 P16035 7077 TIMP2 Metalloproteinase inhibitor 2 17 9606 reviewed 21462296 Q96HH6 55266 TMEM19 Transmembrane protein 19 12 9606 reviewed 28232668 Q9HBL0 7145 TNS1 Tensin-1 2 9606 reviewed 16953426 O15405 27324 TOX3 TOX high mobility group box family member 3 16 9606 reviewed 26868259 Q9H3D4 8626 TP63 Tumor protein 63 3 9606 reviewed 11159940 Q8IWU9 121278 TPH2 Tryptophan 5-hydroxylase 2 12 9606 reviewed 22072571 Q9NRJ4 56995 TULP4 Tubby-related protein 4 6 9606 reviewed 24066709 P04818 7298 TYMS Thymidylate synthase 18 9606 CPO,CL/P reviewed 23404871 Q5SQQ9 11023 VAX1 Ventral anterior homeobox 1 10 9606 CL/P reviewed 23463464;26602496;22095910 Q9UIW0 25806 VAX2 Ventral anterior homeobox 2 2 9606 reviewed 16953426 A3KMH1 23078 VWA8 von Willebrand factor A domain-containing protein 8 13 9606 reviewed 27229527 Q9GZT5 80326 WNT10A Protein Wnt-10a 2 9606 CPO,CL/P reviewed 24957471;16953426 O96014 7481 WNT11 Protein Wnt-11 11 9606 reviewed 26602496;18413325 P56703 7473 WNT3 Proto-oncogene Wnt-3 17 9606 CL/P reviewed 22288914;26505415 P56704 89780 WNT3A Protein Wnt-3a 1 9606 reviewed 18413325 P41221 7474 WNT5A Protein Wnt-5a 3 9606 reviewed 18413325;14755462 Q9Y6F9 7475 WNT6 Protein Wnt-6 2 9606 reviewed 16953426 O14905 7484 WNT9B Protein Wnt-9b 17 9606 reviewed 24437584;21462296;28232668 Q5VVQ6 55432 YOD1 Ubiquitin thioesterase OTU1 1 9606 reviewed 26449438 Q569K4 151126 ZNF385B Zinc finger protein 385B 2 9606 CPO,CL/P reviewed 20849254;16953426 P08183 5243 ABCB1 ATP-dependent translocase ABCB1 7 9606 reviewed 19760622;23443032 Q9NR19 55902 ACSS2 Acetyl-coenzyme A synthetase, cytoplasmic 20 9606 reviewed 27229527 P59510 80070 ADAMTS20 A disintegrin and metalloproteinase with thrombospondin motifs 20 12 9606 reviewed 25798845 Q52LW3 9411 ARHGAP29 Rho GTPase-activating protein 29 1 9606 CPO,CL/P reviewed 27033726;25704602;25081408;25512736;23008150;25163644 P00966 445 ASS1 Argininosuccinate synthase 9 9606 CL/P reviewed 20739017 Q9Y2T1 8313 AXIN2 Axin-2 17 9606 reviewed 28376813;24484320;26602496;22370446 O95429 9530 BAG4 BAG family molecular chaperone regulator 4 8 9606 reviewed 17366557 P20749 602 BCL3 B-cell lymphoma 3 protein 19 9606 CL/P reviewed 9003487;7668251;15054400;14989688;12432504 Q9H2M3 23743 BHMT2 S-methylmethionine--homocysteine S-methyltransferase BHMT2 5 9606 reviewed 20662904 P54132 641 BLM Bloom syndrome protein 15 9606 CL/P reviewed 25045080 P12644 652 BMP4 Bone morphogenetic protein 4 14 9606 CPO,CL/P reviewed 18771417;19839778;23227324;22182590;23237431;19249007;26424979;22514733;19914800 O00238 658 BMPR1B Bone morphogenetic protein receptor type-1B 4 9606 reviewed 14755461 Q9BX63 83990 BRIP1 Fanconi anemia group J protein 17 9606 reviewed 25045080 P19022 1000 CDH2 Cadherin-2 18 9606 reviewed 29524576 Q9HC77 55835 CENPJ Centromere protein J 13 9606 reviewed 26449438 O96005 1209 CLPTM1 Cleft lip and palate transmembrane protein 1 19 9606 reviewed 16122939 P08572 1284 COL4A2 Collagen alpha-2(IV) chain 13 9606 reviewed 26449438 Q01955 1285 COL4A3 Collagen alpha-3(IV) chain 2 9606 CPO,CL/P reviewed 16953426 P53420 1286 COL4A4 Collagen alpha-4(IV) chain 2 9606 reviewed 16953426 Q9H0B8 83716 CRISPLD2 Cysteine-rich secretory protein LCCL domain-containing 2 16 9606 CPO,CL/P reviewed 20815724;21800413;17616516;20662919;25496823 P04798 1543 CYP1A1 Cytochrome P450 1A1 15 9606 CPO,CL/P reviewed 17160896 P05181 1571 CYP2E1 Cytochrome P450 2E1 10 9606 CPO,CL/P reviewed 17506098 P61962 10238 DCAF7 DDB1- and CUL4-associated factor 7 17 9606 reviewed 27033726 Q9UPY3 23405 DICER1 Endoribonuclease Dicer 14 9606 reviewed 28232668 P56177 1745 DLX1 Homeobox protein DLX-1 2 9606 reviewed 25463899 O14641 1856 DVL2 Segment polarity protein dishevelled homolog DVL-2 17 9606 CL/P reviewed 26602496;22887353 Q01094 1869 E2F1 Transcription factor E2F1 20 9606 reviewed 25045080 P98172 1947 EFNB1 Ephrin-B1 X 9606 CPO,CL/P reviewed 15959873;15166289 Q9NR50 8891 EIF2B3 Translation initiation factor eIF-2B subunit gamma 1 9606 reviewed 26449438 P62508 2104 ESRRG Estrogen-related receptor gamma 1 9606 reviewed 29535761 P57679 2121 EVC Ellis-van Creveld syndrome protein 4 9606 CPO,CL/P reviewed 20087401 Q86UK5 132884 EVC2 Limbin 4 9606 reviewed 20087401 Q99502 2138 EYA1 Eyes absent homolog 1 8 9606 CPO,CL/P reviewed 23601008 P00488 2162 F13A1 Coagulation factor XIII A chain 6 9606 CPO,CL/P reviewed 2888553 Q9H0Q0 81553 CYRIA CYFIP-related Rac1 interactor A 2 9606 reviewed 27033726 P05230 2246 FGF1 Fibroblast growth factor 1 5 9606 CPO,CL/P reviewed 21462296;24613087 O15520 2255 FGF10 Fibroblast growth factor 10 5 9606 reviewed 28232668 O76093 8817 FGF18 Fibroblast growth factor 18 5 9606 reviewed 19727229 P11487 2248 FGF3 Fibroblast growth factor 3 11 9606 reviewed 24697712 P11362 2260 FGFR1 Fibroblast growth factor receptor 1 8 9606 CL/P reviewed 17366557;28232668;26199944 P21802 2263 FGFR2 Fibroblast growth factor receptor 2 10 9606 reviewed 25704602 O00358 2304 FOXE1 Forkhead box protein E1 9 9606 CPO,CL/P reviewed 21462296;19779022;24563486;26100861;24252547;26728781 Q12947 2295 FOXF2 Forkhead box protein F2 6 9606 reviewed 26278207 P55316 2290 FOXG1 Forkhead box protein G1 14 9606 reviewed 26868259 O15409 93986 FOXP2 Forkhead box protein P2 7 9606 reviewed 26868259 O60353 8323 FZD6 Frizzled-6 8 9606 CL/P reviewed 26436110 Q99259 2571 GAD1 Glutamate decarboxylase 1 2 9606 CL/P reviewed 15103710 P30793 2643 GCH1 GTP cyclohydrolase 1 14 9606 reviewed 26215833 P10070 2736 GLI2 Zinc finger protein GLI2 2 9606 reviewed 16953426 O60565 26585 GREM1 Gremlin-1 15 9606 CL/P reviewed 26043427 Q2TB90 80201 HKDC1 Hexokinase HKDC1 10 9606 reviewed 27229527 O14896 3664 IRF6 Interferon regulatory factor 6 1 9606 CPO,CL/P reviewed 18278815;16096995;25592222;12920575;16132054;18247422;26346622;20121942;16160700;15317890;12964020;20436469;21039277;20799332;18209213;17702008;22887868;25579819;18506368;17438386;19734457;20544801;21683068;25853057;17549393;15994871;19419265;25896061;26714022;12219090;19536891;20564431;21834040;23029012;23921572;21045959;23169698;20652317;14618417;27033726;23940636;15558496;18798331;19388848;15013698;14757865;16998136;23713753;15472655;25896037 Q92833 3720 JARID2 Protein Jumonji 6 9606 CPO,CL/P reviewed 20506229;25155265 O00139 3796 KIF2A Kinesin-like protein KIF2A 5 9606 reviewed 26449438 Q2M1P5 374654 KIF7 Kinesin-like protein KIF7 15 9606 reviewed 26602496 Q969F8 84634 KISS1R KiSS-1 receptor 19 9606 reviewed 26199944 P05783 3875 KRT18 Keratin, type I cytoskeletal 18 12 9606 reviewed 28232668 P83111 114294 LACTB Serine beta-lactamase-like protein LACTB, mitochondrial 15 9606 reviewed 26449438 Q68G74 431707 LHX8 LIM/homeobox protein Lhx8 1 9606 reviewed 21462296 O95490 23266 ADGRL2 Adhesion G protein-coupled receptor L2 1 9606 reviewed 26868259 Q9Y5Q3 9935 MAFB Transcription factor MafB 20 9606 CPO,CL/P reviewed 21567910;24972815;25081408;21834038;20436469 O15344 4281 MID1 E3 ubiquitin-protein ligase Midline-1 X 9606 reviewed 19049519;9354791;17221865 P08254 4314 MMP3 Stromelysin-1 11 9606 CPO,CL/P reviewed 17537400 P14780 4318 MMP9 Matrix metalloproteinase-9 20 9606 reviewed 21462296 Q96EL3 116540 MRPL53 39S ribosomal protein L53, mitochondrial 2 9606 reviewed 29053389 P28360 4487 MSX1 Homeobox protein MSX-1 4 9606 CPO,CL/P reviewed 21972896;20572854;23580168;15381719;14981713;14755461;12651933;21740177;21689018;24603642;16868654;18177186;18932005;26602496;28232668;20087401;20635363;21866112;11332647;17326252;15354328;9683588;12916025;23903689;25953455 P35548 4488 MSX2 Homeobox protein MSX-2 5 9606 reviewed 26602496 P42898 4524 MTHFR Methylenetetrahydrofolate reductase 1 9606 CPO,CL/P reviewed 20572854;20082468;27167580;26110153;23725631;25745606;24254627;26236436;18661527;16470725;15054400;19419265;12672677;1159940;20890936;23787444;25191068;26540672;15221800;25219684;26140186;24460828;27387868;12796044;21612398;25808365 Q99707 4548 MTR Methionine synthase 1 9606 reviewed 16712703;27167580 Q9UBK8 4552 MTRR Methionine synthase reductase 5 9606 CPO,CL/P reviewed 26963196;27167580 P35579 4627 MYH9 Myosin-9 22 9606 CPO,CL/P reviewed 18716610;19320731;19891592 P11245 10 NAT2 Arylamine N-acetyltransferase 2 8 9606 reviewed 17160896;23660777 Q15223 5818 NECTIN1 Nectin-1 11 9606 reviewed 11559849;26953873;16122939;18356023;19715471;10932188;16674562;24581844;17089422 Q92692 5819 NECTIN2 Nectin-2 19 9606 reviewed 21462296;20572854;20662561;16641627 Q9NQS3 25945 NECTIN3 Nectin-3 3 9606 reviewed 26868259 Q13253 9241 NOG Noggin 17 9606 reviewed 25704602;25339627 O95631 9423 NTN1 Netrin-1 17 9606 reviewed 27033726;25704602 P00439 5053 PAH Phenylalanine-4-hydroxylase 12 9606 CL/P reviewed 24606907 P23760 5077 PAX3 Paired box protein Pax-3 2 9606 reviewed 19142206 P23759 5081 PAX7 Paired box protein Pax-7 1 9606 CPO,CL/P reviewed 27033726;25704602;25081408;19142206;23463464 P55771 5083 PAX9 Paired box protein Pax-9 14 9606 CPO,CL/P reviewed 22976623;26602496;24697712;16247549;23921572 Q9NRA1 56034 PDGFC Platelet-derived growth factor C 4 9606 reviewed 23029525 Q9UBM1 10400 PEMT Phosphatidylethanolamine N-methyltransferase 17 9606 reviewed 20662904 Q9UPP1 23133 PHF8 Histone lysine demethylase PHF8 X 9606 CPO,CL/P reviewed 17661819;17594395;16199551 O14832 5264 PHYH Phytanoyl-CoA dioxygenase, peroxisomal 10 9606 reviewed 27229527 Q13835 5317 PKP1 Plakophilin-1 1 9606 reviewed 26449438 Q8N3Z0 167681 PRSS35 Inactive serine protease 35 6 9606 reviewed 26602496 Q13635 5727 PTCH1 Protein patched homolog 1 9 9606 reviewed 28232668 Q06609 5888 RAD51 DNA repair protein RAD51 homolog 1 15 9606 reviewed 26507587 Q6NVV9 ADAM5 Putative disintegrin and metalloproteinase domain-containing protein 5 9606 reviewed 25776870 P00326 126 ADH1C Alcohol dehydrogenase 1C 4 9606 CPO,CL/P reviewed 20810466 O14520 364 AQP7 Aquaporin-7 9 9606 reviewed 26449438 P35520 875 CBS Cystathionine beta-synthase 21 9606 CPO,CL/P reviewed 21564312;24437588;18203168;16007597 P12830 999 CDH1 Cadherin-1 16 9606 CPO,CL/P reviewed 26123647;20880515;28376813;28151848;24838934 Q9P2D1 55636 CHD7 Chromodomain-helicase-DNA-binding protein 7 8 9606 reviewed 18073582 Q96P44 81578 COL21A1 Collagen alpha-1(XXI) chain 6 9606 reviewed 26868259 P17927 1378 CR1 Complement receptor type 1 1 9606 reviewed 2309700 P00374 1719 DHFR Dihydrofolate reductase 5 9606 CPO,CL/P reviewed 24361572;26221921 P11532 1756 DMD Dystrophin X 9606 CL/P reviewed 26331285 P09038 2247 FGF2 Fibroblast growth factor 2 4 9606 reviewed 14755461 P28472 2562 GABRB3 Gamma-aminobutyric acid receptor subunit beta-3 15 9606 CL/P reviewed 18452349;11810291 P09488 2944 GSTM1 Glutathione S-transferase Mu 1 1 9606 reviewed 16135950 P09211 2950 GSTP1 Glutathione S-transferase P 11 9606 CPO,CL/P reviewed 18159215 P30711 2952 GSTT1 Glutathione S-transferase theta-1 22 9606 CL/P reviewed 17160896;16135950 Q9ULT8 25831 HECTD1 E3 ubiquitin-protein ligase HECTD1 14 9606 reviewed 26868259 Q9Y219 3714 JAG2 Protein jagged-2 14 9606 CPO,CL/P reviewed 20572854;26151095;26602496;16641627;19049519 O43451 8972 MGAM Maltase-glucoamylase, intestinal 7 9606 reviewed 25776870 Q68CQ1 374977 MROH7 Maestro heat-like repeat-containing protein family member 7 1 9606 reviewed 26449438 P11586 4522 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic 14 9606 CPO,CL/P reviewed 25129243;18661527 P18440 9 NAT1 Arylamine N-acetyltransferase 1 8 9606 CPO,CL/P reviewed 23660777;15127906;15523664 Q9NVD7 55742 PARVA Alpha-parvin 11 9606 reviewed 26449438 P49585 5130 PCYT1A Choline-phosphate cytidylyltransferase A 3 9606 reviewed 20662904 P07477 5644 PRSS1 Trypsin-1 7 9606 reviewed 26449438 Q06141 5068 REG3A Regenerating islet-derived protein 3-alpha 2 9606 reviewed 26449438 P63165 7341 SUMO1 Small ubiquitin-related modifier 1 2 9606 reviewed 20544801 P05549 7020 TFAP2A Transcription factor AP-2-alpha 6 9606 reviewed 21781438;26602496 P09493 7168 TPM1 Tropomyosin alpha-1 chain 15 9606 CPO,CL/P reviewed 26792422 P54763 13844 Ephb2 Ephrin type-B receptor 2 4 10090 CPO E12.5,E13.5,E14.5 reviewed 8947026 P54754 13845 Ephb3 Ephrin type-B receptor 3 16 10090 CPO E12.5,E13.5,E14.5 reviewed 8947026 Q3UVK0 226090 Ermp1 Endoplasmic reticulum metallopeptidase 1 19 10090 CPO,CLP,CL/P reviewed 25807483;32253237;25807483 Q8K0G8 77411 Esrp2 Epithelial splicing regulatory protein 2 8 10090 CLP reviewed 26371508 P97464 14042 Ext1 Exostosin-1 15 10090 CPO reviewed 19509472 P37237 14179 Fgf8 Fibroblast growth factor 8 19 10090 CPO,CLP E13.5,E16.5 reviewed 12223415;10601039;25381013 P54130 14180 Fgf9 Fibroblast growth factor 9 14 10090 CPO E14.5,E16.5 reviewed 11493531;12140681 Q9ERZ6 60344 Fign Fidgetin 2 10090 CPO reviewed 16751186 P35846 14275 Folr1 Folate receptor alpha 7 10090 CPO,CLP,CL/P reviewed 12854656 Q61850 14234 Foxc2 Forkhead box protein C2 8 10090 CPO E11.5,E12.5 reviewed 9106663 Q80T14 231470 Fras1 Extracellular matrix protein FRAS1 5 10090 CPO reviewed 24143185 O70421 14362 Fzd1 Frizzled-1 5 10090 CPO reviewed 20940229 Q9JIP6 57265 Fzd2 Frizzled-2 11 10090 CPO E14.5 reviewed 20940229;23095888 Q61090 14369 Fzd7 Frizzled-7 1 10090 CPO E14.5 reviewed 23095888 P63080 14402 Gabrb3 Gamma-aminobutyric acid receptor subunit beta-3 7 10090 CPO reviewed 8392662;1495987;8389469;9108119 P48320 14417 Gad2 Glutamate decarboxylase 2 2 10090 CPO reviewed 10211762 Q01721 14451 Gas1 Growth arrest-specific protein 1 13 10090 CPO E13.0,E14.5 reviewed 17525797 P48031 14472 Gbx2 Homeobox protein GBX-2 1 10090 CPO reviewed 9247335 Q9Z1W4 14561 Gdf11 Growth/differentiation factor 11 10 10090 CPO reviewed 19298661;24019467;10391213 Q9EPS3 93683 Glce D-glucuronyl C5-epimerase 9 10090 CPO E14.5 reviewed 12788935 Q91W43 104174 Gldc Glycine dehydrogenase (decarboxylating), mitochondrial 19 10090 CPO reviewed 25807483 Q61543 20340 Glg1 Golgi apparatus protein 1 8 10090 CPO reviewed 20023171 Q61602 14634 Gli3 Transcriptional activator GLI3 13 10090 CPO,CL/P E13.0,E14.0,E13.5,E14.5 reviewed 5962396;9006072;6049666;27802276;7202526 Q9QYE6 27277 Golga5 Golgin subfamily A member 5 12 10090 CPO reviewed 28509431 Q60631 14784 Grb2 Growth factor receptor-bound protein 2 11 10090 CPO reviewed 11369229 Q8K5C0 252973 Grhl2 Grainyhead-like protein 2 homolog 15 10090 CPO reviewed 21515572;26177923;2065612 Q5FWH3 230824 Grhl3 Grainyhead-like protein 3 homolog 4 10090 CPO reviewed 24360809 Q02591 14836 Gsc Homeobox protein goosecoid 12 10090 CPO E12.5,E13.75,E13.5,E14.5,E15.5 reviewed 10512191;7555726;7555718 Q9WV60 56637 Gsk3b Glycogen synthase kinase-3 beta 16 10090 CPO E12.5,E13.5,E14.5,P6 reviewed 14690613;20981831;17293880;17293880 Q8BGR8 66787 Gskip GSK3B-interacting protein 12 10090 CPO reviewed 26582204 Q9ESZ8 14886 Gtf2i General transcription factor II-I 5 10090 CPO reviewed 19109438 Q78JT3 107766 Haao 3-hydroxyanthranilate 3,4-dioxygenase 17 10090 CPO reviewed 28792876 Q64279 15110 Hand1 Heart- and neural crest derivatives-expressed protein 1 11 10090 CPO reviewed 25053435 Q61039 15111 Hand2 Heart- and neural crest derivatives-expressed protein 2 8 10090 CPO E14.5 reviewed 17531968;12571099;19341725 Q61647 15116 Has1 Hyaluronan synthase 1 17 10090 CPO reviewed 31526805;31509714 Q8BMT9 226861 Hhat Protein-cysteine N-palmitoyltransferase HHAT 1 10090 CLP reviewed 24590292 P31245 15399 Hoxa2 Homeobox protein Hox-A2 6 10090 CPO E12.5,E14.0,E13.5,E14.5,E15.0,E15.5 reviewed 10529419;7903601;10529419;7903600;7903601 P02831 15400 Hoxa3 Homeobox protein Hox-A3 6 10090 CPO reviewed 1673020 P09024 15415 Hoxb7 Homeobox protein Hox-B7 11 10090 CPO reviewed 8541217 O88736 15490 Hsd17b7 3-keto-steroid reductase 1 10090 CPO reviewed 21515572 P20029 14828 Hspa5 Endoplasmic reticulum chaperone BiP 2 10090 CPO reviewed 22821687 Q9D6H2 72938 Hspb11 Intraflagellar transport protein 25 homolog 4 10090 CPO reviewed 22595669 Q6VH22 67661 Ift172 Intraflagellar transport protein 172 homolog 5 10090 CPO reviewed 21653639 Q61371 21821 Ift88 Intraflagellar transport protein 88 homolog 10090 CPO,CLP,CL/P reviewed 12701101;28069795;22228099;27802276;28069795;28346501 P09535 16002 Igf2 Insulin-like growth factor II 7 10090 CPO E14.5,E18.5 reviewed 27933520;9291469 Q07113 16004 Igf2r Cation-independent mannose-6-phosphate receptor 17 10090 CPO reviewed 9389646 P97812 16147 Ihh Indian hedgehog protein 1 10090 CLP E14.5 reviewed 26553654 O55222 16202 Ilk Integrin-linked protein kinase 7 10090 CPO reviewed 12671688 Q80V26 242291 Bpnt2 Golgi-resident adenosine 3',5'-bisphosphate 3'-phosphatase 4 10090 CPO reviewed 18539921 Q04998 16323 Inhba Inhibin beta A chain 13 10090 CPO E12.5 reviewed 7885473 Q04999 16324 Inhbb Inhibin beta B chain 1 10090 CPO reviewed 7885473 Q9JII1 64436 Inpp5e Phosphatidylinositol polyphosphate 5-phosphatase type IV 2 10090 CPO reviewed 19668215 Q9DC61 66865 Pmpca Mitochondrial-processing peptidase subunit alpha 2 10090 CPO reviewed 19668215 Q8BGI3 231070 Insig1 Insulin-induced gene 1 protein 5 10090 CPO reviewed 16955138 Q91WG1 72999 Insig2 Insulin-induced gene 2 protein 1 10090 CPO reviewed 16955138 P11688 16402 Itga5 Integrin alpha-5 15 10090 CPO reviewed 25670798;25242040 P43406 16410 Itgav Integrin alpha-V 2 10090 CPO reviewed 25670798;9827803 P09055 16412 Itgb1 Integrin beta-1 8 10090 CPO reviewed 14522949 Q9Z0T9 16420 Itgb6 Integrin beta-6 2 10090 CPO reviewed 19118215 Q0VBD0 320910 Itgb8 Integrin beta-8 12 10090 CPO reviewed 19118215;12050137 P86046 100040591 Kcnj13 Inward rectifier potassium channel 13 1 10090 CPO E15.5,E18.5 reviewed 26402555 P35561 16518 Kcnj2 Inward rectifier potassium channel 2 11 10090 CPO reviewed 10904001 A2A9F4 69073 Kdf1 Keratinocyte differentiation factor 1 4 10090 CPO reviewed 24075906 Q80WE4 240641 Kif20b Kinesin-like protein KIF20B 19 10090 CPO reviewed 22821687;29208648 Q6ZPU9 72320 Kifbp KIF-binding protein 10 10090 CPO reviewed 21677750 Q922U2 110308 Krt5 Keratin, type II cytoskeletal 5 15 10090 CPO reviewed 11408584;24867950 Q9CXF0 70789 Kynu Kynureninase 10090 CLP,CL/P reviewed 23469164 Q3U9G9 98386 Lbr Delta(14)-sterol reductase LBR 1 10090 CPO reviewed 17403717 A2ARI4 107515 Lgr4 Leucine-rich repeat-containing G-protein coupled receptor 4 2 10090 CPO reviewed 29769720 Q9R1R0 16874 Lhx6 LIM/homeobox protein Lhx6 2 10090 CPO E14.5 reviewed 19591819 Q9JIT0 56873 Lmbr1 Limb region 1 protein 5 10090 CPO reviewed 27933520. Q9Z175 16950 Loxl3 Lysyl oxidase homolog 3 6 10090 CPO E12.5,E13.5,E14.5,E15.5,E16.5 reviewed 26307084 Q8VI56 228357 Lrp4 Low-density lipoprotein receptor-related protein 4 2 10090 CPO reviewed 30235284 Q8R4U7 269593 Luzp1 Leucine zipper protein 1 4 10090 CPO reviewed 18801334 P63085 26413 Mapk1 Mitogen-activated protein kinase 1 16 10090 CPO E13.5,E14.5,E15.5,E16.5 reviewed 18952847 Q63844 26417 Mapk3 Mitogen-activated protein kinase 3 7 10090 CPO E13.5,E14.5,E15.5,E16.5 reviewed 18952847 P23804 17246 Mdm2 E3 ubiquitin-protein ligase Mdm2 10 10090 CPO reviewed 17526734 P60882 269878 Megf8 Multiple epidermal growth factor-like domains protein 8 7 10090 CPO reviewed 25807483 P32443 17286 Meox2 Homeobox protein MOX-2 12 10090 CPO E12.5,E13.5,E14.0,E14.5 reviewed 16284941;10403250 Q3TPJ7 59090 Midn Midnolin 10 10090 CPO reviewed 27933520 Q5SW45 380718 Mks1 Meckel syndrome type 1 protein homolog 11 10090 CPO,CLP,CL/P reviewed 21045211;23454480 Q9CZD0 67096 Mmachc Cyanocobalamin reductase / alkylcobalamin dealkylase 4 10090 CPO reviewed 27933520 P53690 17387 Mmp14 Matrix metalloproteinase-14 14 10090 CPO reviewed 18022611 Q9WTR0 17389 Mmp16 Matrix metalloproteinase-16 4 10090 CPO reviewed 18022611 D3YWE6 433938 Mn1 Transcriptional activator MN1 5 10090 CPO E14.5 reviewed 15870292 O08789 17428 Mnt Max-binding protein MNT 11 10090 CPO reviewed 15028671 Q69ZX6 74522 Morc2a ATPase MORC2A 11 10090 CPO reviewed 27933520 O88940 17681 Msc Musculin 1 10090 CPO reviewed 12493912 O08689 17700 Mstn Growth/differentiation factor 8 1 10090 CPO reviewed 19298661 Q3V3R1 270685 Mthfd1l Monofunctional C1-tetrahydrofolate synthase, mitochondrial 10 10090 CPO reviewed 23267094 Q5FW53 68753 Mybphl Myosin-binding protein H-like 3 10090 CPO reviewed 27996060 Q9WU42 20602 Ncor2 Nuclear receptor corepressor 2 5 10090 CPO reviewed 17928865 Q3UHN9 15531 Ndst1 Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1 18 10090 CPO reviewed 18385133;16020517;17183530 P43021 18119 Nodal Nodal 10 10090 CL/P reviewed 16564040 Q9D6T0 66394 Nosip Nitric oxide synthase-interacting protein 7 10090 CPO reviewed 25546391 Q8VIJ8 17168 Nprl3 GATOR complex protein NPRL3 11 10090 CPO reviewed 22538705 P97333 18186 Nrp1 Neuropilin-1 8 10090 CPO reviewed 22396765 Q8BVE8 107823 Nsd2 Histone-lysine N-methyltransferase NSD2 5 10090 CPO E13.5 reviewed 19483677 Q641K5 77976 Nuak1 NUAK family SNF1-like kinase 1 10 10090 CPO reviewed 22689267 Q8BZN4 74137 Nuak2 NUAK family SNF1-like kinase 2 1 10090 CPO reviewed 22689267 P97346 18230 Nxn Nucleoredoxin 11 10090 CPO reviewed 27933520 Q62052 18431 Oca2 P protein 7 10090 CPO reviewed 8389469;8601493 P58281 74143 Opa1 Dynamin-like 120 kDa protein, mitochondrial 16 10090 CPO reviewed 20652258 Q91ZD1 107587 Osr2 Protein odd-skipped-related 2 15 10090 CPO E12.5,E13.5,E14.5 reviewed 15175245;21420399 Q9D7E3 246257 Ovca2 Esterase OVCA2 11 10090 CPO reviewed 14744934 Q9DCE5 68083 Pak1ip1 p21-activated protein kinase-interacting protein 1 13 10090 CPO reviewed 23935987 P41778 18514 Pbx1 Pre-B-cell leukemia transcription factor 1 1 10090 CPO,CLP,CL/P E13.5 reviewed 21982646;29797482 O35317 18516 Pbx3 Pre-B-cell leukemia transcription factor 3 2 10090 CPO,CLP reviewed 21982646 P23798 22658 Pcgf2 Polycomb group RING finger protein 2 11 10090 CPO reviewed 11290297 P26618 18595 Pdgfra Platelet-derived growth factor receptor alpha 5 10090 CPO E12.5,E13.5,E14.5 reviewed 27856617;17143286;9226440;12490557;26250625;17499702;11782318;27856617 P05622 18596 Pdgfrb Platelet-derived growth factor receptor beta 18 10090 CPO reviewed 27856617;17499702 Q4VA53 100710 Pds5b Sister chromatid cohesion protein PDS5 homolog B 5 10090 CPO reviewed 17652350 Q33DR3 71365 Pdss2 Decaprenyl-diphosphate synthase subunit 2 10 10090 CPO reviewed 21871565 Q3TQR0 233575 Pgap2 Post-GPI attachment to proteins factor 2 7 10090 CPO,CLP,CL/P reviewed 21515572;31232685 Q9QWH1 54383 Phc2 Polyhomeotic-like protein 2 4 10090 CPO reviewed 16024804 Q64323 18700 Piga N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein X 10090 CPO reviewed 10377440;31232685;10377440 Q7TPN3 230801 Pigv GPI mannosyltransferase 2 4 10090 CPO reviewed 25807483 P70314 18740 Pitx1 Pituitary homeobox 1 13 10090 CPO E12.5,E13.5,E14.5,E15.5 reviewed 10101115;10049363 P97474 18741 Pitx2 Pituitary homeobox 2 3 10090 CPO E14.5 reviewed 10499585 Q5RJI4 106522 Pkdcc Extracellular tyrosine-protein kinase PKDCC 17 10090 CPO reviewed 19465597;23792766;19097194 Q9R0E1 26433 Plod3 Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 5 10090 CPO reviewed 29208648 Q3UH93 67784 Plxnd1 Plexin-D1 6 10090 CPO reviewed 25807483 Q9JJJ7 53627 Porcn Protein-serine O-palmitoleoyltransferase porcupine X 10090 CPO reviewed 25451153;21768372 A2A935 70673 Prdm16 Histone-lysine N-methyltransferase PRDM16 4 10090 CPO E14.5 reviewed 32044379;20007998;11818962 Q3U5C7 106042 Prickle1 Prickle-like protein 1 15 10090 CPO reviewed 26883626;25190059;24689077 P63013 18933 Prrx1 Paired mesoderm homeobox protein 1 1 10090 CPO E14.5,E16.5 reviewed 9876178;9729491;9876178;9729491;9876178;7758948 P35235 19247 Ptpn11 Tyrosine-protein phosphatase non-receptor type 11 5 10090 CPO reviewed 19706403;19541608 A2A8L5 19268 Ptprf Receptor-type tyrosine-protein phosphatase F 4 10090 CPO reviewed 19273906;23863482 B0V2N1 19280 Ptprs Receptor-type tyrosine-protein phosphatase S 17 10090 CPO reviewed 19273906;23863482 Q9D0P5 72135 Pygo1 Pygopus homolog 1 9 10090 CPO reviewed 17425782 Q8BND5 104009 Qsox1 Sulfhydryl oxidase 1 1 10090 CPO reviewed 25807483 P54728 19359 Rad23b UV excision repair protein RAD23 homolog B 4 10090 CPO reviewed 11809813 P18911 19411 Rarg Retinoic acid receptor gamma 15 10090 CPO reviewed 7607067;7626396 O35602 19434 Rax Retinal homeobox protein Rx 18 10090 CPO reviewed 9177348;15789424 Q00724 19662 Rbp4 Retinol-binding protein 4 19 10090 CPO reviewed 29892071 Q8VCH7 98711 Rdh10 Retinol dehydrogenase 10 1 10090 CPO reviewed 21930923 O09009 19719 Rfng Beta-1,3-N-acetylglucosaminyltransferase radical fringe 11 10090 CPO reviewed 10391239 Q8CG73 244585 Rpgrip1l Protein fantom 8 10090 CPO,CLP,CL/P reviewed 17553904;17558409;21677750 Q9JJI8 67671 Rpl38 60S ribosomal protein L38 11 10090 CPO,CLP,CL/P reviewed 10889952;21529712;21529712;10889952 Q8BFU0 239405 Rspo2 R-spondin-2 15 10090 CPO,CLP E14.5,E15.5 reviewed 17904116;12782276;21237142;19233133 O88822 235293 Sc5d Lathosterol oxidase 9 10090 CPO reviewed 12812989 G5E861 67161 Sclt1 Sodium channel and clathrin linker 1 3 10090 CPO reviewed 28486600 Q80UF4 76816 Sdccag8 Serologically defined colon cancer antigen 8 homolog 1 10090 CPO reviewed 25088364;29444170 P19324 12406 Serpinh1 Serpin H1 7 10090 CPO reviewed 22492985 O70456 55948 Sfn 14-3-3 protein sigma 4 10090 CPO E14.5 reviewed 479550;6643653;17041603;17041603;24075906 O89032 14218 Sh3pxd2a SH3 and PX domain-containing protein 2A 19 10090 CPO reviewed 25259869 Q62226 20423 Shh Sonic hedgehog protein 5 10090 CPO E11.5,E12.0,E12.5,E13.0,E14.0,E13.5,E14.5,E14.5-15.0,E15.0,E16.0,E15.5,E16.5 reviewed 15576405;15269168;15199404;19304890;23975680;18694563;19394325;30235284;17525797 Q61079 20465 Sim2 Single-minded homolog 2 16 10090 CPO E14.5 reviewed 12203729 Q62231 20471 Six1 Homeobox protein SIX1 12 10090 CPO reviewed 21364285;17499702 Q62233 20473 Six3 Homeobox protein SIX3 17 10090 CPO reviewed 18694563 Q61321 20474 Six4 Homeobox protein SIX4 12 10090 CPO reviewed 17499702 A7M7C7 664805 Skor2 SKI family transcriptional corepressor 2 18 10090 CPO reviewed 21937600 Q91V14 57138 Slc12a5 Solute carrier family 12 member 5 2 10090 CPO reviewed 20529123 O35633 22348 Slc32a1 Vesicular inhibitory amino acid transporter 2 10090 CPO E14.5 reviewed 20333300;16701208;9177246 P97471 17128 Smad4 Mothers against decapentaplegic homolog 4 18 10090 CPO E12.5,E13.5,E14.5 reviewed 25523394;23406900;23406900;25523394 P56726 319757 Smo Smoothened homolog 6 10090 CPO E13.0,E14.5 reviewed 29981310;19304890 Q02085 20613 Snai1 Zinc finger protein SNAI1 2 10090 CPO E13.5,E14.5,E15.5 reviewed 17376812 P97469 20583 Snai2 Zinc finger protein SNAI2 16 10090 CPO reviewed 17376812 Q62245 20662 Sos1 Son of sevenless homolog 1 17 10090 CPO reviewed 9030684;21041952 Q9CQN4 66042 Sostdc1 Sclerostin domain-containing protein 1 12 10090 CPO reviewed 30235284;28692808 Q7M6Y2 20666 Sox11 Transcription factor SOX-11 12 10090 CPO,CLP E14.5 reviewed 26826126;15254231 Q8BMJ8 320145 Sp8 Transcription factor Sp8 12 10090 CPO,CL/P reviewed 14597661;23872235;23872235 Q9QXV8 24064 Spry2 Protein sprouty homolog 2 14 10090 CPO E13.5,E14.5,E16.5 reviewed 17693063;21195053;22674535 Q9Z0P7 24069 Sufu Suppressor of fused homolog 19 10090 CPO reviewed 25807483 P63166 22218 Sumo1 Small ubiquitin-related modifier 1 1 10090 CPO E13.5,E14.5 reviewed 16990542 Q4VBD2 231225 Tapt1 Transmembrane anterior posterior transformation protein 1 5 10090 CPO reviewed 27933520 Q3URV1 544696 Tbc1d32 Protein broad-minded 10 10090 CPO reviewed 25807483 Q810F8 109575 Tbx10 T-box transcription factor TBX10 19 10090 CLP reviewed 15118109;5297683;7101202 Q60707 21385 Tbx2 T-box transcription factor TBX2 11 10090 CPO reviewed 19769959 P70324 21386 Tbx3 T-box transcription factor TBX3 5 10090 CPO reviewed 19769959 Q5SSF7 74645 Tent5c Terminal nucleotidyltransferase 5C 3 10090 CPO reviewed 27626380 Q3URK3 Tet1 Methylcytosine dioxygenase TET1 10 10090 CPO reviewed 22246904 Q8VDR7 76355 Tgds dTDP-D-glucose 4,6-dehydratase 14 10090 CPO reviewed 29208648 Q62312 21813 Tgfbr2 TGF-beta receptor type-2 9 10090 CPO E14.0,E15.5 reviewed 24496627;16780827;12975342;15741317;8873772(KO) Q8C1B2 99929 Tiparp Protein mono-ADP-ribosyltransferase TIPARP 3 10090 CPO reviewed 17143286 Q71KT5 73166 Tm7sf2 Delta(14)-sterol reductase TM7SF2 19 10090 CPO reviewed 17403717 Q9CPV0 66910 Tmem107 Transmembrane protein 107 11 10090 CPO reviewed 22698544;28954202 P02340 22059 Tp53 Cellular tumor antigen p53 11 10090 CPO,CLP reviewed 25119037;14744934 Q5DTH5 110796 Tshz1 Teashirt homolog 1 18 10090 CPO reviewed 17586487 O88413 22158 Tulp3 Tubby-related protein 3 6 10090 CPO reviewed 11406614 Q9Z0P5 23999 Twf2 Twinfilin-2 9 10090 CPO reviewed 25807483 P26687 22160 Twist1 Twist-related protein 1 12 10090 CPO E13.5,E14.5,E15.5,E16.5 reviewed 14724733;19414008 O70475 22235 Ugdh UDP-glucose 6-dehydrogenase 5 10090 CPO reviewed 22745308 Q8C456 216560 Wdpcp WD repeat-containing and planar cell polarity effector protein fritz homolog 11 10090 CPO reviewed 24302887;27158779;24302887 Q3UGF1 213081 Wdr19 WD repeat-containing protein 19 5 10090 CPO,CLP reviewed 22228095 Q8R0S6 215001 Wfikkn1 WAP, Kazal, immunoglobulin, Kunitz and NTR domain-containing protein 1 17 10090 CPO reviewed 24019467 Q7TQN3 278507 Wfikkn2 WAP, Kazal, immunoglobulin, Kunitz and NTR domain-containing protein 2 11 10090 CPO reviewed 24019467 Q6DID7 68151 Wls Protein wntless homolog 3 10090 CPO E11.5,E12.5,E13.5,E14.5,E15.5,E18.5 reviewed 21246653;25922332;26661618 Q64318 21417 Zeb1 Zinc finger E-box-binding homeobox 1 18 10090 CPO,CLP E11.5,E12.5,E13.5,E14.5 reviewed 13539273;10669096;9389660;21980308;16598713;10669096;3183090;13539273 Q9R0G7 24136 Zeb2 Zinc finger E-box-binding homeobox 2 2 10090 CPO E14.5 reviewed 16598713 Q62521 22773 Zic3 Zinc finger protein ZIC 3 X 10090 CPO reviewed 23184148 O09053 22427 Wrn Werner syndrome ATP-dependent helicase homolog 8 10090 CPO reviewed 25807483 P59511 223838 Adamts20 A disintegrin and metalloproteinase with thrombospondin motifs 20 15 10090 CPO reviewed 21041365 Q8CGF1 214137 Arhgap29 Rho GTPase-activating protein 29 3 10090 CPO E13.5 reviewed 28817352 P21275 12159 Bmp4 Bone morphogenetic protein 4 14 10090 CPO,CL/P E11.5,E12.5,E13.5,E14.5,E15.5,E16.5 reviewed 30235284;15716346;27933520;24785830;22219353 Q64317 13390 Dlx1 Homeobox protein DLX-1 2 10090 CPO reviewed 9187081;9187081;22972697 P52795 13641 Efnb1 Ephrin-B1 X 10090 CPO E14.5 reviewed 12919674;15037550 P97767 14048 Eya1 Eyes absent homolog 1 1 10090 CPO E13.5,E14.5 reviewed 10471511;21364285;16990542 O35565 14165 Fgf10 Fibroblast growth factor 10 13 10090 CPO E11.5,E11.75,E12.5,E13.5,E14.5,E15.5,E16.5 reviewed 27826253;23460641;15199404 O89101 14172 Fgf18 Fibroblast growth factor 18 11 10090 CPO E16.5 reviewed 11937493 P16092 14182 Fgfr1 Fibroblast growth factor receptor 1 8 10090 CPO E14.5,E16.5 reviewed 26250517;23754280;12514106 Q8R2I0 110805 Foxe1 Forkhead box protein E1 4 10090 CPO reviewed 9697704;22304410 O54743 14238 Foxf2 Forkhead box protein F2 13 10090 CPO E14.5 reviewed 12812790 P48318 14415 Gad1 Glutamate decarboxylase 1 2 10090 CPO reviewed 10211762;20333300;9326630;9177246 Q0VGT2 14633 Gli2 Zinc finger protein GLI2 1 10090 CPO E11.5,E13.0,E14.5 reviewed 27802276;9006072 P97431 54139 Irf6 Interferon regulatory factor 6 1 10090 CPO E14.0,E13.5,E14.5 reviewed 23406900;17041603;20424327;17041610;17041603 P13297 17701 Msx1 Homeobox protein MSX-1 5 10090 CPO,CLP E11.5,E13.0,E12.5,E14.0,E13.5,E14.5,E15.0,E15.5,E16.0 reviewed 17654563;9256350;7914451;16330189;16330189;19934017;20123092;10512191;16330189 Q03358 17702 Msx2 Homeobox protein MSX-2 13 10090 CPO reviewed 9147639;10742104;9147639 P97466 18121 Nog Noggin 11 10090 CPO reviewed 30235284;24949938;20727875;24949938 P47239 18509 Pax7 Paired box protein Pax-7 4 10090 CPO reviewed 25800090 P47242 18511 Pax9 Paired box protein Pax-9 12 10090 CPO,CLP E14.5 reviewed 21420399;20123092;9732271;17610273;21420399;28692808 Q8CI19 54635 Pdgfc Platelet-derived growth factor C 3 10090 CPO E12.5,E13.5 reviewed 17941048 P11416 19401 Rara Retinoic acid receptor alpha 11 10090 CPO E14.5 reviewed 8096643;7607067;7626396 Q08775 12393 Runx2 Runt-related transcription factor 2 17 10090 CPO E14.5,E16.5 reviewed 9182764;30660360 Q01887 20187 Ryk Tyrosine-protein kinase RYK 9 10090 CPO E14.5 reviewed 10932185 Q8VI24 212712 Satb2 DNA-binding protein SATB2 1 10090 CPO E12.5,E14.25,E13.5,E14.5,E16.5 reviewed 16960803;16751105 Q04887 20682 Sox9 Transcription factor SOX-9 11 10090 CPO E14.5 reviewed 12878728;11371614;11857796;11371614;12878728 Q9QXV9 24063 Spry1 Protein sprouty homolog 1 3 10090 CPO E14.5,E16.5 reviewed 20459789;22674535 Q8K402 245572 Tbx22 T-box transcription factor TBX22 X 10090 CPO E11.5,E12.5,E14.0,E13.5,E14.5 reviewed 19648291 P04202 21803 Tgfb1 Transforming growth factor beta-1 proprotein 7 10090 CPO E12.5,E14.0,E13.5,E15.0,E14.5,E15.5,E17.5 reviewed 18343643 P27090 21808 Tgfb2 Transforming growth factor beta-2 proprotein 1 10090 CPO E12.5,E14.0,E13.5,E14.5,E15.5 reviewed 9217007 O88898 22061 Tp63 Tumor protein 63 16 10090 CPO,CLP reviewed 20424327;20424325;10227294;18634775;22247000 Q2NKI2 22326 Vax1 Ventral anterior homeobox 1 19 10090 CPO reviewed 10601035;15905411 Q9WTP9 24113 Vax2 Ventral anterior homeobox 2 6 10090 CPO reviewed 15905411 P48615 22411 Wnt11 Protein Wnt-11 7 10090 CPO E14.5 reviewed 23095888 P27467 22416 Wnt3a Protein Wnt-3a 11 10090 CPO E14.5 reviewed 23095888 P22725 22418 Wnt5a Protein Wnt-5a 14 10090 CPO E14.5 reviewed 18948417;25807483 O35468 22412 Wnt9b Protein Wnt-9b 11 10090 CLP,CL/P reviewed 21982646;22461561;21982646;16998816 Q61282 11595 Acan Aggrecan core protein 7 10090 CPO reviewed 632744;7920633;10594233;25807483 P37172 11477 Acvr1 Activin receptor type-1 2 10090 CPO reviewed 15037318;26116174 P27038 11480 Acvr2a Activin receptor type-2A 2 10090 CPO reviewed 7885474 Q91ZV8 78560 Adgra2 Adhesion G protein-coupled receptor A2 8 10090 CPO reviewed 21282641 Q9DBR0 56399 Akap8 A-kinase anchor protein 8 17 10090 CPO E14.5 reviewed 16751186 Q62148 19378 Aldh1a2 Retinal dehydrogenase 2 9 10090 CPO,CL/P reviewed 17184764 Q9JHW9 56847 Aldh1a3 Aldehyde dehydrogenase family 1 member A3 7 10090 CPO,CL/P reviewed 17184764 Q8C8B0 216285 Alx1 ALX homeobox protein 1 10 10090 CPO reviewed 9847249 O70137 11694 Alx3 Homeobox protein aristaless-like 3 3 10090 CPO reviewed 11641221 O35137 11695 Alx4 Homeobox protein aristaless-like 4 2 10090 CPO E14.5 reviewed 9847249;11641221 Q7TS75 72345 Amer1 APC membrane recruitment protein 1 X 10090 CPO reviewed 29329488 Q9EST5 67628 Anp32b Acidic leucine-rich nuclear phosphoprotein 32 family member B 4 10090 CPO reviewed 21636789 Q9DBG3 71770 Ap2b1 AP-2 complex subunit beta 11 10090 CPO E14.5 reviewed 20500056;25807483 O88879 11783 Apaf1 Apoptotic protease-activating factor 1 10 10090 CPO reviewed 9216040;10656767;16887819;23892366;9216040;10656767;9753320;16887819 Q8BM75 71371 Arid5b AT-rich interactive domain-containing protein 5B 10 10090 CPO reviewed 17143286 P59598 228790 Asxl1 Polycomb group protein ASXL1 2 10090 CPO reviewed 24218140 Q9R1S0 27078 B9d1 B9 domain-containing protein 1 11 10090 CPO reviewed 21677750 Q9ER42 12022 Barx1 Homeobox protein BarH-like 1 13 10090 CPO reviewed 17855428 Q8K2G4 71492 Bbs7 Bardet-Biedl syndrome 7 protein homolog 3 10090 CPO,CLP,CL/P reviewed 22228099 Q9JJS6 63857 Bco1 Beta,beta-carotene 15,15'-dioxygenase 8 10090 CPO reviewed 29892071 Q99NF1 170752 Bco2 Beta,beta-carotene 9',10'-oxygenase 9 10090 CPO reviewed 29892071 P25916 12151 Bmi1 Polycomb complex protein BMI-1 2 10090 CPO E14.5 reviewed 11290297 P21274 12156 Bmp2 Bone morphogenetic protein 2 2 10090 CPO E12.5,E13.5,E14.5 reviewed 30413887;22219353 P23359 12162 Bmp7 Bone morphogenetic protein 7 2 10090 CPO reviewed 19127565;23091646;23516636;22219353 P36895 12166 Bmpr1a Bone morphogenetic protein receptor type-1A 14 10090 CPO,CLP reviewed 22773757;15716346;23776616 Q8BMQ3 242509 Bnc2 Zinc finger protein basonuclin-2 4 10090 CPO E16.5 reviewed 19706529 P70677 12367 Casp3 Caspase-3 8 10090 CPO reviewed 21515572 P29268 14219 Ccn2 CCN family member 2 10 10090 CPO reviewed 12736220 Q7TSH4 101565 Ccp110 Centriolar coiled-coil protein of 110 kDa 7 10090 CPO reviewed 26965371 P60766 12540 Cdc42 Cell division control protein 42 homolog 4 10090 CPO,CLP reviewed 24056078;22387309 Q9JHU3 105278 Cdk20 Cyclin-dependent kinase 20 13 10090 CPO reviewed 28817564 P49919 12577 Cdkn1c Cyclin-dependent kinase inhibitor 1C 7 10090 CPO E14.5,E17.5 reviewed 9136926;9144284 P60334 12583 Cdo1 Cysteine dioxygenase type 1 18 10090 CPO E14.5 reviewed 21183473 Q32MD9 57810 Cdon Cell adhesion molecule-related/down-regulated by oncogenes 9 10090 CPO reviewed 21183473 E9Q2Z1 330409 Cecr2 Cat eye syndrome critical region protein 2 homolog 6 10090 CPO reviewed 20589882 Q9Z0E2 12667 Chrd Chordin 16 10090 CPO reviewed 24949938;19247433 Q9JME2 58250 Chst11 Carbohydrate sulfotransferase 11 10 10090 CPO reviewed 28185240 Q61245 12814 Col11a1 Collagen alpha-1(XI) chain 3 10090 CPO E14.5 reviewed 4100752;11420059 P28481 12824 Col2a1 Collagen alpha-1(II) chain 15 10090 CPO reviewed 7276808;22028304;15132997;24475193;12917109;7590256;1618904 Q8K297 234407 Colgalt1 Procollagen galactosyltransferase 1 8 10090 CPO reviewed 29208648 Q8CE72 73692 Cplane1 Ciliogenesis and planar polarity effector 1 15 10090 CLP reviewed 25877302 A2A825 76166 Cplane2 Ciliogenesis and planar polarity effector 2 4 10090 CL/P reviewed 25807483 Q6PG95 57354 Cramp1 Protein cramped-like 17 10090 CPO reviewed 27933520 P59054 215418 Csrnp1 Cysteine/serine-rich nuclear protein 1 9 10090 CPO reviewed 17143286 Q02248 12387 Ctnnb1 Catenin beta-1 9 10090 CPO,CLP E14.5 reviewed 19204372;21185284;19631205;22354888;21600200;11262227;21307168;21571225 Q9JJN6 67087 Ctnnbip1 Beta-catenin-interacting protein 1 4 10090 CPO reviewed 15148409 Q811W2 232174 Cyp26b1 Cytochrome P450 26B1 6 10090 CPO E11.75,E11.5,E12.5,E13.5,E14.5 reviewed 19235731 Q8K0C4 13121 Cyp51a1 Lanosterol 14-alpha demethylase 5 10090 CPO reviewed 21705796 O88455 13360 Dhcr7 7-dehydrocholesterol reductase 7 10090 CPO reviewed 11230174 Q3TDN0 68897 Disp1 Protein dispatched homolog 1 1 10090 CPO E13.0,E14.5 reviewed 15576405;15269168 Q811D0 13383 Dlg1 Disks large homolog 1 16 10090 CPO E12.5,E15.5 reviewed 11238884;23349879;25860837 P40764 13392 Dlx2 Homeobox protein DLX-2 2 10090 CPO reviewed 9187081;12902388;7590232;23246068;9187081;22972697 P70396 13395 Dlx5 Homeobox protein DLX-5 6 10090 CPO E13.5 reviewed 16330189;19934017;16330189;10433909;16330189;10433912;16330189;19934017;10433912;19934017 O88509 13436 Dnmt3b DNA (cytosine-5)-methyltransferase 3B 2 10090 CPO E14.5 reviewed 20587527 Q5NCQ5 116905 Dph1 2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 11 10090 CPO reviewed 14744934;24895408;14744934 Q499E4 72507 Dzip1l Zinc finger protein DZIP1L 9 10090 CPO,CLP reviewed 28530676 P22387 13614 Edn1 Endothelin-1 13 10090 CPO reviewed 8152482;15110048;25725491 P22389 13615 Edn2 Endothelin-2 4 10090 CPO reviewed 24043815 Q61614 13617 Ednra Endothelin-1 receptor 8 10090 CPO reviewed 19185569 P48302 13618 Ednrb Endothelin receptor type B 14 10090 CPO,CLP reviewed 17693063;8722795;17693063 O08543 13640 Efna5 Ephrin-A5 17 10090 CPO E14.5 reviewed 9491985 P52800 13642 Efnb2 Ephrin-B2 8 10090 CPO reviewed 15223333 Q01279 13649 Egfr Epidermal growth factor receptor 11 10090 CPO E14.5 reviewed 10319864;7630400 P70372 15568 Elavl1 ELAV-like protein 1 8 10090 CPO reviewed 19307312 Q8BSY0 65973 Asph Aspartyl/asparaginyl beta-hydroxylase 4 10090 CPO reviewed 11773073 O35625 12005 Axin1 Axin-1 10090 CPO reviewed 19204372 Q6AZB0 117606 Boc Brother of CDO 10090 CPO reviewed 21183473 Q02789 Cacna1s Voltage-dependent L-type calcium channel subunit alpha-1S 10090 CPO reviewed 14300095;7119092 O70589 12361 Cask Peripheral plasma membrane protein CASK X 10090 CPO reviewed 17287346;8494785;9787075 A2AJK6 320790 Chd7 Chromodomain-helicase-DNA-binding protein 7 4 10090 CPO reviewed 16207732 Q60680 Chuk Inhibitor of nuclear factor kappa-B kinase subunit alpha 10090 CPO reviewed 17351639;10346820;10195896 Q9JKV2 56542 Cilk1 Serine/threonine-protein kinase ICK 9 10090 CPO reviewed 24853502 P45481 Crebbp Histone lysine acetyltransferase CREBBP 10090 CPO reviewed 16237459;26730956 Q64010 12928 Crk Adapter molecule crk 11 10090 CPO reviewed 16880535 Q9Z319 53419 Corin Atrial natriuretic peptide-converting enzyme 5 10090 CPO reviewed 6391574 O88876 20148 Dhrs3 Short-chain dehydrogenase/reductase 3 4 10090 CPO reviewed 24733397 Q8R418 Dicer1 Endoribonuclease Dicer 10090 CPO reviewed 23716939;20144605;21256960;20457670;22753148;20102707 P39054 13430 Dnm2 Dynamin-2 9 10090 CPO reviewed 25807483 Q3US41 207920 Esrp1 Epithelial splicing regulatory protein 1 4 10090 CLP reviewed 2637150;26371508;;26371508 Q9Z191 14051 Eya4 Eyes absent homolog 4 10 10090 CPO reviewed 18219393 Q7TPD1 225055 Fbxo11 F-box only protein 11 17 10090 CPO E14.5 reviewed 17035249;19580641;10932191 Q8VBV4 50754 Fbxw7 F-box/WD repeat-containing protein 7 3 10090 CPO reviewed 21503901;10601039 P21803 14183 Fgfr2 Fibroblast growth factor receptor 2 10090 CPO E13.5,E14.0,E14.5,E16.0,E16.5 reviewed 26250517;20133659;15316116;20175913;15975938;15199404;19235875 Q8BTM8 192176 Flna Filamin-A X 10090 CPO reviewed 6825286 Q61060 15221 Foxd3 Forkhead box protein D3 10090 CPO reviewed 18367558;21254333 P47931 14313 Fst Follistatin 13 10090 CPO reviewed 7885475 Q3UYI6 70300 Fuz Protein fuzzy homolog 7 10090 CPO reviewed 21935430;27158779;27395007(calvaria) Q9QYY0 14388 Gab1 GRB2-associated-binding protein 1 8 10090 CPO reviewed 17881575 P20863 14559 Gdf1 Embryonic growth/differentiation factor 1 8 10090 CL/P reviewed 16564040 Q9R087 23888 Gpc6 Glypican-6 14 10090 CPO reviewed 28696225;2056286 Q9JI57 57080 Gtf2ird1 General transcription factor II-I repeat domain-containing protein 1 5 10090 CPO reviewed 19109438 O88895 Hdac3 Histone deacetylase 3 10090 CPO reviewed 23506836 Q9R1Y5 15248 Hic1 Hypermethylated in cancer 1 protein 10090 CPO reviewed 10655551 P09022 Hoxa1 Homeobox protein Hox-A1 10090 CPO reviewed 10529419;7903601 Q8R3H7 23908 Hs2st1 Heparan sulfate 2-O-sulfotransferase 1 3 10090 CPO reviewed 9637690 Q05793 15530 Hspg2 Basement membrane-specific heparan sulfate proteoglycan core protein 10090 CPO reviewed 10579729 E9PY46 106633 Ift140 Intraflagellar transport protein 140 homolog 17 10090 CPO reviewed 24009529;25807483 Q9QYE5 16450 Jag2 Protein jagged-2 12 10090 CPO E13.5,E14.5,E15.5 reviewed 9531541;20533406 Q9ERI5 107817 Jmjd6 Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 11 10090 CPO reviewed 15345036 Q8BZ21 Kat6a Histone acetyltransferase KAT6A 10090 CPO reviewed 22921202;22921202;16651658 P28741 16568 Kif3a Kinesin-like protein KIF3A 11 10090 CPO,CLP reviewed 27802276;20106874;21429982;27802276;28346501 B7ZNG0 Kif7 Kinesin-like protein KIF7 10090 CPO reviewed 25807483 P70662 16825 Ldb1 LIM domain-binding protein 1 19 10090 CPO reviewed 24433583 Q9Z1P4 14160 Lgr5 Leucine-rich repeat-containing G-protein coupled receptor 5 10 10090 CPO reviewed 29769720 Q3UVD5 329252 Lgr6 Leucine-rich repeat-containing G-protein coupled receptor 6 1 10090 CPO reviewed 29769720 O35652 16875 Lhx8 LIM/homeobox protein Lhx8 3 10090 CPO E14.5 reviewed 10611327;19591819;15217369 Q99JW4 110829 Lims1 LIM and senescent cell antigen-like-containing domain protein 1 10090 CPO reviewed 17272814 A2ARV4 14725 Lrp2 Low-density lipoprotein receptor-related protein 2 2 10090 CPO reviewed 23968836 O88572 16974 Lrp6 Low-density lipoprotein receptor-related protein 6 10090 CPO,CLP E14.5 reviewed 21237142;19700620;19653321;19653321;19700620 Q62073 26409 Map3k7 Mitogen-activated protein kinase kinase kinase 7 4 10090 CPO reviewed 25523394;23460641;23546880 O35618 17248 Mdm4 Protein Mdm4 1 10090 CPO reviewed 17526734 Q8CFN5 17260 Mef2c Myocyte-specific enhancer factor 2C 13 10090 CPO E14.5 reviewed 17420000 O88559 17283 Men1 Menin 19 10090 CPO reviewed 17927973 P16056 Met Hepatocyte growth factor receptor 10090 CPO reviewed 17881575 Q61879 77579 Myh10 Myosin-10 11 10090 CPO reviewed 25807483 Q8R2Y9 69917 Nabp2 SOSS complex subunit B1 10 10090 CPO reviewed 23408915;22940690 Q9JL19 Ncoa6 Nuclear receptor coactivator 6 10090 CPO reviewed 12446700 Q9EQH7 83398 Ndst3 Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3 3 10090 CPO reviewed 18385133 Q80Z25 237222 Ofd1 Oral-facial-digital syndrome 1 protein homolog 10090 CPO reviewed 16311594 P80206 Otx2 Homeobox protein OTX2 10090 CPO reviewed 7590242 P24610 18505 Pax3 Paired box protein Pax-3 1 10090 CPO E14.5 reviewed 18483623;25800090 O35984 18515 Pbx2 Pre-B-cell leukemia transcription factor 2 17 10090 CPO,CLP reviewed 21982646 Q05920 Pc Pyruvate carboxylase, mitochondrial 10090 CPO reviewed 13525591 P48725 18541 Pcnt Pericentrin 10090 CPO reviewed 27933520 Q04592 18552 Pcsk5 Proprotein convertase subtilisin/kexin type 5 19 10090 CPO reviewed 18519639 Q6A026 Pds5a Sister chromatid cohesion protein PDS5 homolog A 10090 CPO E14.5 reviewed 19412548 Q64028 13619 Phc1 Polyhomeotic-like protein 1 10090 CPO reviewed 16024804;9367423 Q8BUL6 101476 Plekha1 Pleckstrin homology domain-containing family A member 1 7 10090 CPO reviewed 17143286 O35691 18949 Pnn Pinin 10090 CPO reviewed 17654715 Q06348 20204 Prrx2 Paired mesoderm homeobox protein 2 10090 CPO E12.5,E14.5 reviewed 9729491;9876178;9729491;9876178 Q61115 19206 Ptch1 Protein patched homolog 1 13 10090 CPO,CLP,CL/P E13.0,E13.5,E14.5 reviewed 23900075;24590292;23900075;23900075;23897749 Q3UA37 69232 Qrich1 Glutamine-rich protein 1 10090 CPO reviewed 25807483 Q64008 19376 Rab34 Ras-related protein Rab-34 10090 CPO reviewed 27626380 P63001 19353 Rac1 Ras-related C3 botulinum toxin substrate 1 5 10090 CPO reviewed 20184871 Q75NR7 79456 Recql4 ATP-dependent DNA helicase Q4 10090 CPO reviewed 15703196 O89026 19876 Robo1 Roundabout homolog 1 10090 CPO reviewed 25807483 Q9Z138 Ror2 Tyrosine-protein kinase transmembrane receptor ROR2 13 10090 CPO E14.5 reviewed 10700181;14745966;18948417;18948417 Q03347 Runx1 Runt-related transcription factor 1 10090 CPO E12.0,E13.0,E12.5,E14.0,E14.5,E16.0 reviewed 19000669 E9PZQ0 20190 Ryr1 Ryanodine receptor 1 7 10090 CPO reviewed 18003898 P0DPB4 30953 Schip1 Schwannomin-interacting protein 1 3 10090 CPO reviewed 17143286 Q8R0X7 20397 Sgpl1 Sphingosine-1-phosphate lyase 1 10 10090 CPO E14.5 reviewed 17143286 P70390 20429 Shox2 Short stature homeobox protein 2 3 10090 CPO E12.5,E13.5,E14.0 reviewed 16141225;18393307 Q9QXN0 27428 Shroom3 Protein Shroom3 10090 CPO reviewed 10589677 Q60698 Ski Ski oncogene 10090 CPO reviewed 9284043 A2AKQ0 242585 Slc35d1 UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter 4 10090 CPO reviewed 27933520 Q3URD3 83997 Slmap Sarcolemmal membrane-associated protein 14 10090 CPO reviewed 27933520 Q8BLY1 64075 Smoc1 SPARC-related modular calcium-binding protein 1 10090 CPO reviewed 21750680 O70492 Snx3 Sorting nexin-3 10090 CPO reviewed 27933520 P48432 20674 Sox2 Transcription factor SOX-2 10090 CPO E13.5,E14.75,E14.5,E16.5,E17.5,P6,P5,P21 reviewed 23638914 P35710 20678 Sox5 Transcription factor SOX-5 6 10090 CPO reviewed 11702786 P40645 20679 Sox6 Transcription factor SOX-6 7 10090 CPO reviewed 11702786 Q9JJ11 Tacc3 Transforming acidic coiled-coil-containing protein 3 10090 CPO reviewed 11847113 P70323 21380 Tbx1 T-box transcription factor TBX1 10090 CPO,CLP,CL/P E11.5,E13.5 reviewed 19855134;25556186;27933520;2237126;2237126;11242110;15190012;22921202;2237126;25556186;15190012;19557177;16452092;20501333;19247433 O35437 21412 Tcf21 Transcription factor 21 10 10090 CPO reviewed 12493912 O08784 21453 Tcof1 Treacle protein 18 10090 CPO reviewed 10888597;16938878 Q2MV57 67978 Tctn2 Tectonic-2 10090 CPO reviewed 21565611 P34056 21418 Tfap2a Transcription factor AP-2-alpha 10090 CPO,CLP reviewed 14975722;;25381013;8622766;8622765;29229773 Q61313 21419 Tfap2b Transcription factor AP-2-beta 1 10090 CPO reviewed 29229773 P17125 Tgfb3 Transforming growth factor beta-3 proprotein 10090 CPO E11.5,E12.5,E14.0,E13.5,E14.5,E15.5 reviewed 7493022;7493021;25523394;18343643;17967447;22223248;17967447 Q64729 21812 Tgfbr1 TGF-beta receptor type-1 4 10090 CPO,CLP,CL/P E14.0 reviewed 18586087;16806156 O88393 21814 Tgfbr3 Transforming growth factor beta receptor type 3 10090 CPO reviewed 25382630 Q3TLI0 Trappc10 Trafficking protein particle complex subunit 10 10090 CPO reviewed 25807483 Q99PP7 94093 Trim33 E3 ubiquitin-protein ligase TRIM33 10090 CPO reviewed 25523394 Q925H1 Trps1 Zinc finger transcription factor Trps1 10090 CPO reviewed 31130868 Q91ZD4 93840 Vangl2 Vang-like protein 2 1 10090 CPO reviewed 20940229;23095888 Q62059 Vcan Versican core protein 10090 CPO reviewed 21041365 Q00731 22339 Vegfa Vascular endothelial growth factor A 17 10090 CPO reviewed 12539040