include ("blast_comm_head.php");?> include ("blast_head.php");?>
Program blastn blastp blastx tblastn tblastx Database ERGR human mRNA ERGR human protein ERGR mouse mRNA ERGR mouse protein ERGR rat mRNA ERGR rat protein ERGR fly mRNA ERGR fly protein ERGR worm mRNA ERGR worm protein ERGR all species mRNA ERGR all species protein
Enter sequence below in FASTA format Or load it from disk
Set subsequence: From       To
Expect 1e-10 1e-5 0.0001 0.01 1 10 100 Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment
Query Genetic Codes (blastx only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Database Genetic Codes (tblast[nx] only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF
Other advanced options: