Gene Page: ZNF197
Summary ?
GeneID | 10168 |
Symbol | ZNF197 |
Synonyms | D3S1363E|P18|VHLaK|ZKSCAN9|ZNF166|ZNF20|ZSCAN41 |
Description | zinc finger protein 197 |
Reference | HGNC:HGNC:12988|Ensembl:ENSG00000186448|HPRD:10322|Vega:OTTHUMG00000133089 |
Gene type | protein-coding |
Map location | 3p21 |
Pascal p-value | 0.032 |
Gene in Data Sources
Gene set name | Method of gene set | Description | Info |
---|---|---|---|
CV:PGCnp | Genome-wide Association Study | GWAS |
Section I. Genetics and epigenetics annotation
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
Top co-expressed genes in brain regions
Top 10 positively co-expressed genes | ||
Gene | Pearson's Correlation | Spearman's Correlation |
FAM179B | 0.91 | 0.89 |
TMEM30A | 0.91 | 0.92 |
SORT1 | 0.90 | 0.89 |
MFSD6 | 0.90 | 0.89 |
ARFGEF2 | 0.90 | 0.88 |
MBNL1 | 0.90 | 0.87 |
NCOA7 | 0.90 | 0.89 |
SYT11 | 0.89 | 0.89 |
WASL | 0.89 | 0.92 |
ARL8B | 0.89 | 0.89 |
Top 10 negatively co-expressed genes | ||
Gene | Pearson's Correlation | Spearman's Correlation |
RAB34 | -0.46 | -0.51 |
BCL7C | -0.45 | -0.50 |
C1orf61 | -0.45 | -0.54 |
DBI | -0.45 | -0.51 |
RP9P | -0.45 | -0.52 |
IL32 | -0.45 | -0.47 |
ST20 | -0.43 | -0.45 |
AC006276.2 | -0.43 | -0.42 |
EFEMP2 | -0.43 | -0.46 |
BTBD17 | -0.42 | -0.55 |
Section V. Pathway annotation
Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
---|---|---|---|
REACTOME GENERIC TRANSCRIPTION PATHWAY | 352 | 181 | All SZGR 2.0 genes in this pathway |
BROWNE HCMV INFECTION 10HR UP | 101 | 69 | All SZGR 2.0 genes in this pathway |
ROME INSULIN TARGETS IN MUSCLE DN | 204 | 114 | All SZGR 2.0 genes in this pathway |