Gene Page: COLEC10
Summary ?
| GeneID | 10584 |
| Symbol | COLEC10 |
| Synonyms | CLL1 |
| Description | collectin subfamily member 10 |
| Reference | MIM:607620|HGNC:HGNC:2220|HPRD:07403| |
| Gene type | protein-coding |
| Map location | 8q24.12 |
| Pascal p-value | 0.412 |
| Fetal beta | 0.257 |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:PGCnp | Genome-wide Association Study | GWAS | |
| CV:PheWAS | Phenome-wide association studies (PheWAS) | 157 SNPs associated with schizophrenia | 0 |
Section I. Genetics and epigenetics annotation
CV:PheWAS
| SNP ID | Chromosome | Position | Allele | P | Function | Gene | Up/Down Distance |
|---|
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression during devlopment (BrainCloud)
Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
Top co-expressed genes in brain regions
| Top 10 positively co-expressed genes | ||
| Gene | Pearson's Correlation | Spearman's Correlation |
| QRICH1 | 0.87 | 0.90 |
| CAPN5 | 0.87 | 0.89 |
| UBQLN4 | 0.86 | 0.87 |
| C7orf26 | 0.86 | 0.87 |
| FAM40A | 0.86 | 0.88 |
| KIAA1967 | 0.86 | 0.90 |
| KDM2B | 0.86 | 0.88 |
| HECTD3 | 0.86 | 0.88 |
| ZNF574 | 0.86 | 0.88 |
| YY1AP1 | 0.86 | 0.87 |
| Top 10 negatively co-expressed genes | ||
| Gene | Pearson's Correlation | Spearman's Correlation |
| AF347015.31 | -0.70 | -0.80 |
| MT-CO2 | -0.70 | -0.81 |
| AF347015.27 | -0.68 | -0.78 |
| S100B | -0.68 | -0.77 |
| AF347015.33 | -0.67 | -0.76 |
| C5orf53 | -0.67 | -0.69 |
| MT-CYB | -0.67 | -0.77 |
| FXYD1 | -0.67 | -0.77 |
| AF347015.8 | -0.66 | -0.79 |
| HSD17B14 | -0.66 | -0.74 |
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| SCHAEFFER PROSTATE DEVELOPMENT 48HR DN | 428 | 306 | All SZGR 2.0 genes in this pathway |
| SCHAEFFER SOX9 TARGETS IN PROSTATE DEVELOPMENT DN | 45 | 33 | All SZGR 2.0 genes in this pathway |
| NIKOLSKY BREAST CANCER 8Q23 Q24 AMPLICON | 157 | 87 | All SZGR 2.0 genes in this pathway |
| LEE LIVER CANCER | 49 | 29 | All SZGR 2.0 genes in this pathway |
| GRADE METASTASIS DN | 45 | 31 | All SZGR 2.0 genes in this pathway |
| BROWNE HCMV INFECTION 30MIN DN | 150 | 99 | All SZGR 2.0 genes in this pathway |
| KRIEG KDM3A TARGETS NOT HYPOXIA | 208 | 107 | All SZGR 2.0 genes in this pathway |
| NABA ECM AFFILIATED | 171 | 89 | All SZGR 2.0 genes in this pathway |
| NABA MATRISOME ASSOCIATED | 753 | 411 | All SZGR 2.0 genes in this pathway |
| NABA MATRISOME | 1028 | 559 | All SZGR 2.0 genes in this pathway |