Gene Page: SNRNP35
Summary ?
| GeneID | 11066 |
| Symbol | SNRNP35 |
| Synonyms | HM-1|U1SNRNPBP |
| Description | small nuclear ribonucleoprotein U11/U12 subunit 35 |
| Reference | HGNC:HGNC:30852|HPRD:15595| |
| Gene type | protein-coding |
| Map location | 12q24.31 |
| Pascal p-value | 9.221E-4 |
| Sherlock p-value | 0.696 |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:PGCnp | Genome-wide Association Study | GWAS |
Section I. Genetics and epigenetics annotation
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
Top co-expressed genes in brain regions
| Top 10 positively co-expressed genes | ||
| Gene | Pearson's Correlation | Spearman's Correlation |
| C11orf9 | 0.95 | 0.90 |
| FA2H | 0.95 | 0.88 |
| ERBB3 | 0.95 | 0.89 |
| P2RX7 | 0.93 | 0.88 |
| ICOSLG | 0.93 | 0.86 |
| LDB3 | 0.93 | 0.89 |
| ENPP2 | 0.92 | 0.88 |
| CNP | 0.92 | 0.88 |
| ABCA2 | 0.92 | 0.76 |
| LGR5 | 0.92 | 0.79 |
| Top 10 negatively co-expressed genes | ||
| Gene | Pearson's Correlation | Spearman's Correlation |
| RPL12 | -0.52 | -0.74 |
| ALKBH2 | -0.51 | -0.69 |
| NR2C2AP | -0.51 | -0.68 |
| TRNAU1AP | -0.51 | -0.63 |
| BCL7C | -0.51 | -0.66 |
| NKIRAS2 | -0.50 | -0.54 |
| CCDC28B | -0.50 | -0.74 |
| TUBB2B | -0.50 | -0.67 |
| C9orf46 | -0.50 | -0.68 |
| RPL14 | -0.50 | -0.70 |
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| ONKEN UVEAL MELANOMA UP | 783 | 507 | All SZGR 2.0 genes in this pathway |
| YANG BREAST CANCER ESR1 LASER UP | 34 | 25 | All SZGR 2.0 genes in this pathway |
| BLALOCK ALZHEIMERS DISEASE UP | 1691 | 1088 | All SZGR 2.0 genes in this pathway |
| GENTILE UV HIGH DOSE DN | 312 | 203 | All SZGR 2.0 genes in this pathway |
| GENTILE UV RESPONSE CLUSTER D1 | 18 | 13 | All SZGR 2.0 genes in this pathway |
| MARSON BOUND BY FOXP3 STIMULATED | 1022 | 619 | All SZGR 2.0 genes in this pathway |
| ZEMBUTSU SENSITIVITY TO METHOTREXATE | 18 | 9 | All SZGR 2.0 genes in this pathway |
| MARTENS TRETINOIN RESPONSE DN | 841 | 431 | All SZGR 2.0 genes in this pathway |
| DELACROIX RARG BOUND MEF | 367 | 231 | All SZGR 2.0 genes in this pathway |
| LIM MAMMARY STEM CELL DN | 428 | 246 | All SZGR 2.0 genes in this pathway |