Gene Page: SAAL1
Summary ?
| GeneID | 113174 |
| Symbol | SAAL1 |
| Synonyms | SPACIA1 |
| Description | serum amyloid A like 1 |
| Reference | HGNC:HGNC:25158|Ensembl:ENSG00000166788|HPRD:13999|Vega:OTTHUMG00000166428 |
| Gene type | protein-coding |
| Map location | 11p15.1 |
| Pascal p-value | 0.018 |
| eGene | Caudate basal ganglia Cerebellar Hemisphere Cerebellum Cortex Frontal Cortex BA9 Hypothalamus Nucleus accumbens basal ganglia Myers' cis & trans Meta |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:PGCnp | Genome-wide Association Study | GWAS |
Section I. Genetics and epigenetics annotation
eQTL annotation
| SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
|---|---|---|---|---|---|---|---|---|
| rs1079785 | chr11 | 18072272 | SAAL1 | 113174 | 6.403E-4 | cis | ||
| rs7950928 | chr11 | 18073211 | SAAL1 | 113174 | 7.779E-4 | cis | ||
| rs7937368 | chr11 | 18073428 | SAAL1 | 113174 | 0 | cis | ||
| rs11024460 | chr11 | 18084181 | SAAL1 | 113174 | 4.11E-4 | cis | ||
| rs11024482 | chr11 | 18120646 | SAAL1 | 113174 | 0.01 | cis | ||
| rs11024485 | chr11 | 18121538 | SAAL1 | 113174 | 0 | cis | ||
| rs1399025 | chr11 | 18135996 | SAAL1 | 113174 | 4.371E-4 | cis | ||
| rs2468842 | chr11 | 18154119 | SAAL1 | 113174 | 0.03 | cis | ||
| rs1975777 | chr11 | 18154222 | SAAL1 | 113174 | 0.07 | cis | ||
| rs1079785 | chr11 | 18072272 | SAAL1 | 113174 | 0.05 | trans | ||
| rs7950928 | chr11 | 18073211 | SAAL1 | 113174 | 0.06 | trans | ||
| rs7937368 | chr11 | 18073428 | SAAL1 | 113174 | 0.09 | trans | ||
| rs11024460 | chr11 | 18084181 | SAAL1 | 113174 | 0.03 | trans | ||
| rs11024485 | chr11 | 18121538 | SAAL1 | 113174 | 0.07 | trans | ||
| rs1399025 | chr11 | 18135996 | SAAL1 | 113174 | 0.04 | trans |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
No co-expressed genes in brain regions
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| RODRIGUES THYROID CARCINOMA ANAPLASTIC UP | 722 | 443 | All SZGR 2.0 genes in this pathway |
| GRAESSMANN APOPTOSIS BY DOXORUBICIN DN | 1781 | 1082 | All SZGR 2.0 genes in this pathway |
| RASHI RESPONSE TO IONIZING RADIATION 6 | 84 | 54 | All SZGR 2.0 genes in this pathway |
| LOPEZ MBD TARGETS | 957 | 597 | All SZGR 2.0 genes in this pathway |
| WEI MYCN TARGETS WITH E BOX | 795 | 478 | All SZGR 2.0 genes in this pathway |
| ICHIBA GRAFT VERSUS HOST DISEASE D7 UP | 107 | 67 | All SZGR 2.0 genes in this pathway |