Gene Page: CCDC85A

Summary ?
GeneID114800
SymbolCCDC85A
Synonyms-
Descriptioncoiled-coil domain containing 85A
ReferenceHGNC:HGNC:29400|Ensembl:ENSG00000055813|Vega:OTTHUMG00000152033
Gene typeprotein-coding
Map location2p16.1
Pascal p-value0.001
Sherlock p-value0.223
eGeneCaudate basal ganglia
Cerebellar Hemisphere
Putamen basal ganglia

Gene in Data Sources
Gene set name Method of gene setDescriptionInfo
CV:PGCnpGenome-wide Association StudyGWAS

Section I. Genetics and epigenetics annotation

@eQTL annotation

SNP IDChromosomePositioneGeneGene Entrez IDpvalueqvalueTSS distanceeQTL type
rs201842945256635587CCDC85AENSG00000055813.53.8575E-60.02224329gtex_brain_putamen_basal
rs12620094256659492CCDC85AENSG00000055813.53.8535E-60.02248234gtex_brain_putamen_basal
rs13414331256662467CCDC85AENSG00000055813.54.15871E-60.02251209gtex_brain_putamen_basal
rs79330727256712638CCDC85AENSG00000055813.51.23452E-60.02301380gtex_brain_putamen_basal
rs2033014256713056CCDC85AENSG00000055813.53.05021E-60.02301798gtex_brain_putamen_basal
rs1304411256715146CCDC85AENSG00000055813.51.79325E-60.02303888gtex_brain_putamen_basal
rs397868767256719790CCDC85AENSG00000055813.51.41061E-60.02308532gtex_brain_putamen_basal
rs11678015256757010CCDC85AENSG00000055813.52.17218E-60.02345752gtex_brain_putamen_basal
rs1304899256759863CCDC85AENSG00000055813.53.51132E-60.02348605gtex_brain_putamen_basal
rs1304897256760001CCDC85AENSG00000055813.53.1327E-60.02348743gtex_brain_putamen_basal

Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

No co-expressed genes in brain regions


Section V. Pathway annotation

Pathway namePathway size# SZGR 2.0 genes in pathwayInfo
GARY CD5 TARGETS DN 431263All SZGR 2.0 genes in this pathway
ZHOU INFLAMMATORY RESPONSE FIMA DN 284156All SZGR 2.0 genes in this pathway
ZHAN MULTIPLE MYELOMA HP UP 4926All SZGR 2.0 genes in this pathway
MEISSNER NPC HCP WITH H3K4ME3 AND H3K27ME3 142103All SZGR 2.0 genes in this pathway
COULOUARN TEMPORAL TGFB1 SIGNATURE DN 13899All SZGR 2.0 genes in this pathway
MIKKELSEN NPC HCP WITH H3K4ME3 AND H3K27ME3 210148All SZGR 2.0 genes in this pathway
FIGUEROA AML METHYLATION CLUSTER 7 UP 11868All SZGR 2.0 genes in this pathway