Gene Page: RAB42
Summary ?
| GeneID | 115273 |
| Symbol | RAB42 |
| Synonyms | - |
| Description | RAB42, member RAS oncogene family |
| Reference | HGNC:HGNC:28702|HPRD:14644| |
| Gene type | protein-coding |
| Map location | 1p35.3 |
| Pascal p-value | 0.002 |
| eGene | Putamen basal ganglia |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:PGCnp | Genome-wide Association Study | GWAS |
Section I. Genetics and epigenetics annotation
eQTL annotation
| SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
|---|---|---|---|---|---|---|---|---|
| rs11585813 | 1 | 29681060 | RAB42 | ENSG00000188060.6 | 1.64662E-6 | 0.01 | 762348 | gtex_brain_putamen_basal |
| rs9426425 | 1 | 29681349 | RAB42 | ENSG00000188060.6 | 1.24567E-6 | 0.01 | 762637 | gtex_brain_putamen_basal |
| rs10753334 | 1 | 29682086 | RAB42 | ENSG00000188060.6 | 3.50226E-6 | 0.01 | 763374 | gtex_brain_putamen_basal |
| rs10753335 | 1 | 29682495 | RAB42 | ENSG00000188060.6 | 8.44799E-7 | 0.01 | 763783 | gtex_brain_putamen_basal |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
No co-expressed genes in brain regions
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| FULCHER INFLAMMATORY RESPONSE LECTIN VS LPS DN | 463 | 290 | All SZGR 2.0 genes in this pathway |
| TAKEDA TARGETS OF NUP98 HOXA9 FUSION 10D DN | 142 | 90 | All SZGR 2.0 genes in this pathway |
| NUYTTEN EZH2 TARGETS UP | 1037 | 673 | All SZGR 2.0 genes in this pathway |
| MEISSNER NPC HCP WITH H3 UNMETHYLATED | 536 | 296 | All SZGR 2.0 genes in this pathway |
| KRIEG HYPOXIA NOT VIA KDM3A | 770 | 480 | All SZGR 2.0 genes in this pathway |
| FORTSCHEGGER PHF8 TARGETS DN | 784 | 464 | All SZGR 2.0 genes in this pathway |