Gene Page: WDR17
Summary ?
| GeneID | 116966 |
| Symbol | WDR17 |
| Synonyms | - |
| Description | WD repeat domain 17 |
| Reference | MIM:609005|HGNC:HGNC:16661|Ensembl:ENSG00000150627|HPRD:16417|Vega:OTTHUMG00000160791 |
| Gene type | protein-coding |
| Map location | 4q34 |
| Pascal p-value | 0.002 |
| eGene | Cerebellum Myers' cis & trans |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:PGCnp | Genome-wide Association Study | GWAS |
Section I. Genetics and epigenetics annotation
eQTL annotation
| SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
|---|---|---|---|---|---|---|---|---|
| rs823066 | chr1 | 205771172 | WDR17 | 116966 | 0.13 | trans | ||
| snp_a-2169623 | 0 | WDR17 | 116966 | 0.05 | trans | |||
| rs9257144 | chr6 | 28729980 | WDR17 | 116966 | 0.09 | trans | ||
| rs16894557 | chr6 | 28999825 | WDR17 | 116966 | 0.01 | trans | ||
| rs4947631 | chr7 | 50603378 | WDR17 | 116966 | 0.02 | trans |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
No co-expressed genes in brain regions
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| JAATINEN HEMATOPOIETIC STEM CELL UP | 316 | 190 | All SZGR 2.0 genes in this pathway |
| DODD NASOPHARYNGEAL CARCINOMA UP | 1821 | 933 | All SZGR 2.0 genes in this pathway |
| RODRIGUES THYROID CARCINOMA ANAPLASTIC UP | 722 | 443 | All SZGR 2.0 genes in this pathway |
| STARK PREFRONTAL CORTEX 22Q11 DELETION DN | 517 | 309 | All SZGR 2.0 genes in this pathway |
| ACEVEDO METHYLATED IN LIVER CANCER DN | 940 | 425 | All SZGR 2.0 genes in this pathway |