Gene Page: WHAMM
Summary ?
| GeneID | 123720 |
| Symbol | WHAMM |
| Synonyms | WHAMM1|WHDC1 |
| Description | WAS protein homolog associated with actin, golgi membranes and microtubules |
| Reference | MIM:612393|HGNC:HGNC:30493| |
| Gene type | protein-coding |
| Map location | 15q25.2 |
| Pascal p-value | 0.007 |
| Sherlock p-value | 0.926 |
| eGene | Myers' cis & trans Meta |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:PGCnp | Genome-wide Association Study | GWAS |
Section I. Genetics and epigenetics annotation
eQTL annotation
| SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
|---|---|---|---|---|---|---|---|---|
| rs11855735 | chr15 | 83296544 | WHAMM | 123720 | 0.17 | cis | ||
| rs17158267 | chr15 | 83497588 | WHAMM | 123720 | 1.806E-8 | cis | ||
| rs1002881 | chr15 | 83615273 | WHAMM | 123720 | 0.18 | cis | ||
| rs17158132 | chr15 | 83679705 | WHAMM | 123720 | 0.01 | cis | ||
| rs7690085 | chr4 | 162708999 | WHAMM | 123720 | 0.07 | trans | ||
| rs17158267 | chr15 | 83497588 | WHAMM | 123720 | 4.267E-6 | trans | ||
| rs736718 | chr16 | 82656424 | WHAMM | 123720 | 0.17 | trans |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
No co-expressed genes in brain regions
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| WANG CLIM2 TARGETS DN | 186 | 114 | All SZGR 2.0 genes in this pathway |
| BROWNE HCMV INFECTION 16HR UP | 225 | 139 | All SZGR 2.0 genes in this pathway |
| FOSTER TOLERANT MACROPHAGE DN | 409 | 268 | All SZGR 2.0 genes in this pathway |
| QI HYPOXIA | 140 | 96 | All SZGR 2.0 genes in this pathway |
| WAKABAYASHI ADIPOGENESIS PPARG RXRA BOUND 8D | 882 | 506 | All SZGR 2.0 genes in this pathway |
| RAO BOUND BY SALL4 | 227 | 149 | All SZGR 2.0 genes in this pathway |