Gene Page: PCP2
Summary ?
| GeneID | 126006 |
| Symbol | PCP2 |
| Synonyms | GPSM4 |
| Description | Purkinje cell protein 2 |
| Reference | HGNC:HGNC:30209|Ensembl:ENSG00000174788|HPRD:18723|Vega:OTTHUMG00000182405 |
| Gene type | protein-coding |
| Map location | 19p13.2 |
| Pascal p-value | 0.04 |
| eGene | Myers' cis & trans |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:PGCnp | Genome-wide Association Study | GWAS |
Section I. Genetics and epigenetics annotation
eQTL annotation
| SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
|---|---|---|---|---|---|---|---|---|
| rs727658 | chr1 | 4435269 | PCP2 | 126006 | 0.1 | trans | ||
| rs17392743 | chr1 | 54764240 | PCP2 | 126006 | 0.01 | trans | ||
| rs2502827 | chr1 | 176044216 | PCP2 | 126006 | 0.1 | trans | ||
| rs17572651 | chr1 | 218943612 | PCP2 | 126006 | 2.185E-6 | trans | ||
| snp_a-1919794 | 0 | PCP2 | 126006 | 0.09 | trans | |||
| rs16829545 | chr2 | 151977407 | PCP2 | 126006 | 7.772E-12 | trans | ||
| rs16858054 | chr2 | 171105787 | PCP2 | 126006 | 0.04 | trans | ||
| rs3845734 | chr2 | 171125572 | PCP2 | 126006 | 1.161E-8 | trans | ||
| rs1967327 | chr2 | 179314358 | PCP2 | 126006 | 0.03 | trans | ||
| rs8179648 | chr2 | 179377279 | PCP2 | 126006 | 0.01 | trans | ||
| rs7584986 | chr2 | 184111432 | PCP2 | 126006 | 1.416E-20 | trans | ||
| rs7635430 | chr3 | 180152035 | PCP2 | 126006 | 0.01 | trans | ||
| snp_a-1815771 | 0 | PCP2 | 126006 | 0.17 | trans | |||
| rs2183142 | chr4 | 159232695 | PCP2 | 126006 | 0.05 | trans | ||
| rs170776 | chr4 | 173276735 | PCP2 | 126006 | 0.04 | trans | ||
| rs1396222 | chr4 | 173279496 | PCP2 | 126006 | 0.02 | trans | ||
| rs335993 | chr4 | 173321789 | PCP2 | 126006 | 0.06 | trans | ||
| rs335980 | chr4 | 173329784 | PCP2 | 126006 | 0.01 | trans | ||
| rs335982 | chr4 | 173330945 | PCP2 | 126006 | 0.05 | trans | ||
| rs336016 | chr4 | 173366576 | PCP2 | 126006 | 0.18 | trans | ||
| rs337984 | chr4 | 173411662 | PCP2 | 126006 | 0.06 | trans | ||
| rs425620 | chr5 | 9413361 | PCP2 | 126006 | 0.13 | trans | ||
| rs268485 | chr5 | 9426200 | PCP2 | 126006 | 0.14 | trans | ||
| rs17762315 | chr5 | 76807576 | PCP2 | 126006 | 4.689E-5 | trans | ||
| rs7729096 | chr5 | 76835927 | PCP2 | 126006 | 0 | trans | ||
| rs10491487 | chr5 | 80323367 | PCP2 | 126006 | 6.507E-6 | trans | ||
| rs1560919 | chr5 | 89587250 | PCP2 | 126006 | 0 | trans | ||
| rs979348 | chr5 | 97074134 | PCP2 | 126006 | 0.08 | trans | ||
| rs1368303 | chr5 | 147672388 | PCP2 | 126006 | 1.186E-7 | trans | ||
| rs1929780 | chr6 | 40757438 | PCP2 | 126006 | 0.05 | trans | ||
| rs1929769 | chr6 | 40765977 | PCP2 | 126006 | 0.01 | trans | ||
| rs2756320 | chr6 | 105758291 | PCP2 | 126006 | 0.2 | trans | ||
| rs17161618 | chr7 | 98801703 | PCP2 | 126006 | 0.13 | trans | ||
| rs17166659 | chr7 | 132342143 | PCP2 | 126006 | 0.09 | trans | ||
| rs17079498 | chr8 | 3018343 | PCP2 | 126006 | 0.01 | trans | ||
| rs4872540 | chr8 | 22598980 | PCP2 | 126006 | 0.19 | trans | ||
| rs6989594 | chr8 | 126303866 | PCP2 | 126006 | 0.04 | trans | ||
| rs11139334 | chr9 | 84209393 | PCP2 | 126006 | 1.991E-5 | trans | ||
| snp_a-4267673 | 0 | PCP2 | 126006 | 0.09 | trans | |||
| rs2766987 | chr9 | 113667956 | PCP2 | 126006 | 0.15 | trans | ||
| rs4837782 | chr9 | 123330812 | PCP2 | 126006 | 0.07 | trans | ||
| rs10739568 | chr9 | 123331138 | PCP2 | 126006 | 0.15 | trans | ||
| rs3765543 | chr9 | 134458323 | PCP2 | 126006 | 0.08 | trans | ||
| rs6480454 | chr10 | 72108174 | PCP2 | 126006 | 0.17 | trans | ||
| rs12253651 | chr10 | 72109045 | PCP2 | 126006 | 0.17 | trans | ||
| rs11612748 | chr12 | 59007670 | PCP2 | 126006 | 0.1 | trans | ||
| rs11107996 | chr12 | 95737141 | PCP2 | 126006 | 0.01 | trans | ||
| rs12716680 | chr13 | 42196469 | PCP2 | 126006 | 0.09 | trans | ||
| rs7996604 | chr13 | 42224412 | PCP2 | 126006 | 0.03 | trans | ||
| snp_a-1880548 | 0 | PCP2 | 126006 | 0.04 | trans | |||
| rs9557810 | chr13 | 102781654 | PCP2 | 126006 | 0.06 | trans | ||
| rs9989228 | chr14 | 37809252 | PCP2 | 126006 | 0.1 | trans | ||
| rs1255634 | chr14 | 63972654 | PCP2 | 126006 | 0.06 | trans | ||
| rs17104720 | chr14 | 77127308 | PCP2 | 126006 | 0.02 | trans | ||
| rs6574467 | chr14 | 79179744 | PCP2 | 126006 | 0.09 | trans | ||
| rs10146003 | chr14 | 79191170 | PCP2 | 126006 | 0.09 | trans | ||
| rs16955618 | chr15 | 29937543 | PCP2 | 126006 | 8.001E-32 | trans | ||
| rs2077735 | chr15 | 58479024 | PCP2 | 126006 | 0.07 | trans | ||
| snp_a-1830894 | 0 | PCP2 | 126006 | 0.01 | trans | |||
| rs16945437 | chr17 | 11797650 | PCP2 | 126006 | 0.05 | trans | ||
| rs16978352 | chr18 | 42944875 | PCP2 | 126006 | 0 | trans | ||
| rs17085767 | chr18 | 69839397 | PCP2 | 126006 | 0.02 | trans | ||
| rs1507467 | chr18 | 73755746 | PCP2 | 126006 | 0.17 | trans | ||
| rs7247284 | chr19 | 12921185 | PCP2 | 126006 | 0.19 | trans | ||
| rs749043 | chr20 | 46995700 | PCP2 | 126006 | 0.02 | trans | ||
| rs1041786 | chr21 | 22617710 | PCP2 | 126006 | 0.1 | trans | ||
| rs5955025 | chrX | 142542997 | PCP2 | 126006 | 0.04 | trans |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
No co-expressed genes in brain regions
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| LEE TARGETS OF PTCH1 AND SUFU DN | 83 | 69 | All SZGR 2.0 genes in this pathway |
| WANG CISPLATIN RESPONSE AND XPC UP | 202 | 115 | All SZGR 2.0 genes in this pathway |
| LEIN CEREBELLUM MARKERS | 85 | 47 | All SZGR 2.0 genes in this pathway |
| BILANGES SERUM SENSITIVE GENES | 90 | 54 | All SZGR 2.0 genes in this pathway |