Gene Page: LRRIQ3
Summary ?
| GeneID | 127255 |
| Symbol | LRRIQ3 |
| Synonyms | LRRC44 |
| Description | leucine-rich repeats and IQ motif containing 3 |
| Reference | HGNC:HGNC:28318|Ensembl:ENSG00000162620|HPRD:14485|Vega:OTTHUMG00000009508 |
| Gene type | protein-coding |
| Map location | 1p31.1 |
| Pascal p-value | 0.34 |
| eGene | Caudate basal ganglia Hippocampus Hypothalamus Nucleus accumbens basal ganglia Putamen basal ganglia |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:GWAScat | Genome-wide Association Studies | This data set includes 560 SNPs associated with schizophrenia. A total of 486 genes were mapped to these SNPs within 50kb. | |
| CV:GWASdb | Genome-wide Association Studies | GWASdb records for schizophrenia | |
| CV:PGCnp | Genome-wide Association Study | GWAS | |
| CV:Ripke_2013 | Genome-wide Association Study | Multi-stage GWAS, Sweden population and PGC2. 24 leading SNPs |
Section I. Genetics and epigenetics annotation
eQTL annotation
| SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
|---|---|---|---|---|---|---|---|---|
| rs7545797 | 1 | 74337673 | LRRIQ3 | ENSG00000162620.11 | 7.283E-6 | 0 | 326198 | gtex_brain_putamen_basal |
| rs7524030 | 1 | 74337690 | LRRIQ3 | ENSG00000162620.11 | 7.283E-6 | 0 | 326181 | gtex_brain_putamen_basal |
| rs7537932 | 1 | 74337712 | LRRIQ3 | ENSG00000162620.11 | 7.285E-6 | 0 | 326159 | gtex_brain_putamen_basal |
| rs922936 | 1 | 74476321 | LRRIQ3 | ENSG00000162620.11 | 4.87E-7 | 0 | 187550 | gtex_brain_putamen_basal |
| rs11210395 | 1 | 74478339 | LRRIQ3 | ENSG00000162620.11 | 1.123E-9 | 0 | 185532 | gtex_brain_putamen_basal |
| rs11210400 | 1 | 74490459 | LRRIQ3 | ENSG00000162620.11 | 9.305E-7 | 0 | 173412 | gtex_brain_putamen_basal |
| rs11331087 | 1 | 74500485 | LRRIQ3 | ENSG00000162620.11 | 6.853E-7 | 0 | 163386 | gtex_brain_putamen_basal |
| rs201616162 | 1 | 74501473 | LRRIQ3 | ENSG00000162620.11 | 5.961E-6 | 0 | 162398 | gtex_brain_putamen_basal |
| rs199870053 | 1 | 74501476 | LRRIQ3 | ENSG00000162620.11 | 1.953E-6 | 0 | 162395 | gtex_brain_putamen_basal |
| rs1384883 | 1 | 74501477 | LRRIQ3 | ENSG00000162620.11 | 1.064E-6 | 0 | 162394 | gtex_brain_putamen_basal |
| rs6676622 | 1 | 74509805 | LRRIQ3 | ENSG00000162620.11 | 1.063E-6 | 0 | 154066 | gtex_brain_putamen_basal |
| rs10493531 | 1 | 74517667 | LRRIQ3 | ENSG00000162620.11 | 5.232E-7 | 0 | 146204 | gtex_brain_putamen_basal |
| rs4650243 | 1 | 74518464 | LRRIQ3 | ENSG00000162620.11 | 5.997E-7 | 0 | 145407 | gtex_brain_putamen_basal |
| rs4649996 | 1 | 74520279 | LRRIQ3 | ENSG00000162620.11 | 3.401E-8 | 0 | 143592 | gtex_brain_putamen_basal |
| rs10789384 | 1 | 74521552 | LRRIQ3 | ENSG00000162620.11 | 9.196E-7 | 0 | 142319 | gtex_brain_putamen_basal |
| rs4650245 | 1 | 74522474 | LRRIQ3 | ENSG00000162620.11 | 1.994E-6 | 0 | 141397 | gtex_brain_putamen_basal |
| rs1574842 | 1 | 74524827 | LRRIQ3 | ENSG00000162620.11 | 1.959E-6 | 0 | 139044 | gtex_brain_putamen_basal |
| rs11210403 | 1 | 74530240 | LRRIQ3 | ENSG00000162620.11 | 1.805E-6 | 0 | 133631 | gtex_brain_putamen_basal |
| rs1032082 | 1 | 74531987 | LRRIQ3 | ENSG00000162620.11 | 7.088E-6 | 0 | 131884 | gtex_brain_putamen_basal |
| rs1984229 | 1 | 74532053 | LRRIQ3 | ENSG00000162620.11 | 8.131E-7 | 0 | 131818 | gtex_brain_putamen_basal |
| rs11579809 | 1 | 74532587 | LRRIQ3 | ENSG00000162620.11 | 1.256E-7 | 0 | 131284 | gtex_brain_putamen_basal |
| rs1483793 | 1 | 74535130 | LRRIQ3 | ENSG00000162620.11 | 2.556E-8 | 0 | 128741 | gtex_brain_putamen_basal |
| rs7535190 | 1 | 74536732 | LRRIQ3 | ENSG00000162620.11 | 7.879E-8 | 0 | 127139 | gtex_brain_putamen_basal |
| rs11210404 | 1 | 74538252 | LRRIQ3 | ENSG00000162620.11 | 7.97E-7 | 0 | 125619 | gtex_brain_putamen_basal |
| rs1483795 | 1 | 74542927 | LRRIQ3 | ENSG00000162620.11 | 1.569E-6 | 0 | 120944 | gtex_brain_putamen_basal |
| rs5775225 | 1 | 74542936 | LRRIQ3 | ENSG00000162620.11 | 7.518E-7 | 0 | 120935 | gtex_brain_putamen_basal |
| rs12124366 | 1 | 74543216 | LRRIQ3 | ENSG00000162620.11 | 3.847E-7 | 0 | 120655 | gtex_brain_putamen_basal |
| rs1843023 | 1 | 74545527 | LRRIQ3 | ENSG00000162620.11 | 1.565E-6 | 0 | 118344 | gtex_brain_putamen_basal |
| rs7535929 | 1 | 74560002 | LRRIQ3 | ENSG00000162620.11 | 1.353E-6 | 0 | 103869 | gtex_brain_putamen_basal |
| rs10789387 | 1 | 74560411 | LRRIQ3 | ENSG00000162620.11 | 6.424E-7 | 0 | 103460 | gtex_brain_putamen_basal |
| rs7550195 | 1 | 74562305 | LRRIQ3 | ENSG00000162620.11 | 3.096E-8 | 0 | 101566 | gtex_brain_putamen_basal |
| rs12122433 | 1 | 74562876 | LRRIQ3 | ENSG00000162620.11 | 6.489E-7 | 0 | 100995 | gtex_brain_putamen_basal |
| rs7534577 | 1 | 74563905 | LRRIQ3 | ENSG00000162620.11 | 8.427E-7 | 0 | 99966 | gtex_brain_putamen_basal |
| rs7546306 | 1 | 74564195 | LRRIQ3 | ENSG00000162620.11 | 5.726E-7 | 0 | 99676 | gtex_brain_putamen_basal |
| rs186136551 | 1 | 74565900 | LRRIQ3 | ENSG00000162620.11 | 1.815E-8 | 0 | 97971 | gtex_brain_putamen_basal |
| rs6682492 | 1 | 74566513 | LRRIQ3 | ENSG00000162620.11 | 6.4E-7 | 0 | 97358 | gtex_brain_putamen_basal |
| rs10789388 | 1 | 74568752 | LRRIQ3 | ENSG00000162620.11 | 9.361E-7 | 0 | 95119 | gtex_brain_putamen_basal |
| rs10890108 | 1 | 74571182 | LRRIQ3 | ENSG00000162620.11 | 3.898E-7 | 0 | 92689 | gtex_brain_putamen_basal |
| rs4142949 | 1 | 74572255 | LRRIQ3 | ENSG00000162620.11 | 6.572E-7 | 0 | 91616 | gtex_brain_putamen_basal |
| rs4142948 | 1 | 74572351 | LRRIQ3 | ENSG00000162620.11 | 1.299E-6 | 0 | 91520 | gtex_brain_putamen_basal |
| rs2128935 | 1 | 74573736 | LRRIQ3 | ENSG00000162620.11 | 3.986E-7 | 0 | 90135 | gtex_brain_putamen_basal |
| rs7539146 | 1 | 74576072 | LRRIQ3 | ENSG00000162620.11 | 1.86E-7 | 0 | 87799 | gtex_brain_putamen_basal |
| rs2343864 | 1 | 74577069 | LRRIQ3 | ENSG00000162620.11 | 1.808E-9 | 0 | 86802 | gtex_brain_putamen_basal |
| rs10789389 | 1 | 74579161 | LRRIQ3 | ENSG00000162620.11 | 6.215E-6 | 0 | 84710 | gtex_brain_putamen_basal |
| rs61407724 | 1 | 74580433 | LRRIQ3 | ENSG00000162620.11 | 1.927E-6 | 0 | 83438 | gtex_brain_putamen_basal |
| rs11210417 | 1 | 74581159 | LRRIQ3 | ENSG00000162620.11 | 2.292E-8 | 0 | 82712 | gtex_brain_putamen_basal |
| rs11210418 | 1 | 74582677 | LRRIQ3 | ENSG00000162620.11 | 1.801E-9 | 0 | 81194 | gtex_brain_putamen_basal |
| rs6676103 | 1 | 74583033 | LRRIQ3 | ENSG00000162620.11 | 8.397E-7 | 0 | 80838 | gtex_brain_putamen_basal |
| rs201145682 | 1 | 74584825 | LRRIQ3 | ENSG00000162620.11 | 1.84E-9 | 0 | 79046 | gtex_brain_putamen_basal |
| rs568592953 | 1 | 74584826 | LRRIQ3 | ENSG00000162620.11 | 3.465E-9 | 0 | 79045 | gtex_brain_putamen_basal |
| rs13375255 | 1 | 74585871 | LRRIQ3 | ENSG00000162620.11 | 4.486E-6 | 0 | 78000 | gtex_brain_putamen_basal |
| rs11210419 | 1 | 74586968 | LRRIQ3 | ENSG00000162620.11 | 3.525E-8 | 0 | 76903 | gtex_brain_putamen_basal |
| rs1483791 | 1 | 74588733 | LRRIQ3 | ENSG00000162620.11 | 1.331E-8 | 0 | 75138 | gtex_brain_putamen_basal |
| rs1601153 | 1 | 74592761 | LRRIQ3 | ENSG00000162620.11 | 1.431E-8 | 0 | 71110 | gtex_brain_putamen_basal |
| rs11585837 | 1 | 74594340 | LRRIQ3 | ENSG00000162620.11 | 8.397E-7 | 0 | 69531 | gtex_brain_putamen_basal |
| rs1601152 | 1 | 74594901 | LRRIQ3 | ENSG00000162620.11 | 8.397E-7 | 0 | 68970 | gtex_brain_putamen_basal |
| rs56033001 | 1 | 74596862 | LRRIQ3 | ENSG00000162620.11 | 4.151E-8 | 0 | 67009 | gtex_brain_putamen_basal |
| rs2086787 | 1 | 74599312 | LRRIQ3 | ENSG00000162620.11 | 1.03E-6 | 0 | 64559 | gtex_brain_putamen_basal |
| rs35149770 | 1 | 74601782 | LRRIQ3 | ENSG00000162620.11 | 7.444E-6 | 0 | 62089 | gtex_brain_putamen_basal |
| rs7543134 | 1 | 74602050 | LRRIQ3 | ENSG00000162620.11 | 3.41E-8 | 0 | 61821 | gtex_brain_putamen_basal |
| rs10890113 | 1 | 74602233 | LRRIQ3 | ENSG00000162620.11 | 1.431E-8 | 0 | 61638 | gtex_brain_putamen_basal |
| rs201676750 | 1 | 74603848 | LRRIQ3 | ENSG00000162620.11 | 5.825E-7 | 0 | 60023 | gtex_brain_putamen_basal |
| rs199833919 | 1 | 74603849 | LRRIQ3 | ENSG00000162620.11 | 2.136E-7 | 0 | 60022 | gtex_brain_putamen_basal |
| rs67802179 | 1 | 74613725 | LRRIQ3 | ENSG00000162620.11 | 4.777E-9 | 0 | 50146 | gtex_brain_putamen_basal |
| rs10493530 | 1 | 74616422 | LRRIQ3 | ENSG00000162620.11 | 8.407E-7 | 0 | 47449 | gtex_brain_putamen_basal |
| rs6680375 | 1 | 74617281 | LRRIQ3 | ENSG00000162620.11 | 8.355E-7 | 0 | 46590 | gtex_brain_putamen_basal |
| rs1384885 | 1 | 74627980 | LRRIQ3 | ENSG00000162620.11 | 3.336E-8 | 0 | 35891 | gtex_brain_putamen_basal |
| rs56202150 | 1 | 74639505 | LRRIQ3 | ENSG00000162620.11 | 3.987E-6 | 0 | 24366 | gtex_brain_putamen_basal |
| rs6702487 | 1 | 74641019 | LRRIQ3 | ENSG00000162620.11 | 9.36E-8 | 0 | 22852 | gtex_brain_putamen_basal |
| rs34018059 | 1 | 74641756 | LRRIQ3 | ENSG00000162620.11 | 3.916E-6 | 0 | 22115 | gtex_brain_putamen_basal |
| rs12042613 | 1 | 74642959 | LRRIQ3 | ENSG00000162620.11 | 4.949E-6 | 0 | 20912 | gtex_brain_putamen_basal |
| rs12042713 | 1 | 74643278 | LRRIQ3 | ENSG00000162620.11 | 3.88E-6 | 0 | 20593 | gtex_brain_putamen_basal |
| rs11210427 | 1 | 74644516 | LRRIQ3 | ENSG00000162620.11 | 3.862E-6 | 0 | 19355 | gtex_brain_putamen_basal |
| rs12029606 | 1 | 74649590 | LRRIQ3 | ENSG00000162620.11 | 3.779E-6 | 0 | 14281 | gtex_brain_putamen_basal |
| rs7531271 | 1 | 74653178 | LRRIQ3 | ENSG00000162620.11 | 8.184E-8 | 0 | 10693 | gtex_brain_putamen_basal |
| rs1930588 | 1 | 74655356 | LRRIQ3 | ENSG00000162620.11 | 3.776E-6 | 0 | 8515 | gtex_brain_putamen_basal |
| rs12747924 | 1 | 74656617 | LRRIQ3 | ENSG00000162620.11 | 3.756E-6 | 0 | 7254 | gtex_brain_putamen_basal |
| rs1412824 | 1 | 74660225 | LRRIQ3 | ENSG00000162620.11 | 7.973E-10 | 0 | 3646 | gtex_brain_putamen_basal |
| rs11210430 | 1 | 74660453 | LRRIQ3 | ENSG00000162620.11 | 4.256E-6 | 0 | 3418 | gtex_brain_putamen_basal |
| rs7535418 | 1 | 74660728 | LRRIQ3 | ENSG00000162620.11 | 1.06E-10 | 0 | 3143 | gtex_brain_putamen_basal |
| rs10789391 | 1 | 74662581 | LRRIQ3 | ENSG00000162620.11 | 6.132E-10 | 0 | 1290 | gtex_brain_putamen_basal |
| rs11806946 | 1 | 74663709 | LRRIQ3 | ENSG00000162620.11 | 5.337E-11 | 0 | 162 | gtex_brain_putamen_basal |
| rs1412825 | 1 | 74663814 | LRRIQ3 | ENSG00000162620.11 | 5.337E-11 | 0 | 57 | gtex_brain_putamen_basal |
| rs4422957 | 1 | 74664149 | LRRIQ3 | ENSG00000162620.11 | 5.337E-11 | 0 | -278 | gtex_brain_putamen_basal |
| rs3835390 | 1 | 74664504 | LRRIQ3 | ENSG00000162620.11 | 7.414E-11 | 0 | -633 | gtex_brain_putamen_basal |
| rs944795 | 1 | 74664948 | LRRIQ3 | ENSG00000162620.11 | 5.373E-11 | 0 | -1077 | gtex_brain_putamen_basal |
| rs17591640 | 1 | 74665060 | LRRIQ3 | ENSG00000162620.11 | 3.772E-6 | 0 | -1189 | gtex_brain_putamen_basal |
| rs792310 | 1 | 74665493 | LRRIQ3 | ENSG00000162620.11 | 5.337E-11 | 0 | -1622 | gtex_brain_putamen_basal |
| rs526736 | 1 | 74665742 | LRRIQ3 | ENSG00000162620.11 | 5.337E-11 | 0 | -1871 | gtex_brain_putamen_basal |
| rs522042 | 1 | 74666274 | LRRIQ3 | ENSG00000162620.11 | 5.337E-11 | 0 | -2403 | gtex_brain_putamen_basal |
| rs35329584 | 1 | 74666344 | LRRIQ3 | ENSG00000162620.11 | 2.396E-11 | 0 | -2473 | gtex_brain_putamen_basal |
| rs9804006 | 1 | 74666507 | LRRIQ3 | ENSG00000162620.11 | 3.772E-6 | 0 | -2636 | gtex_brain_putamen_basal |
| rs370861309 | 1 | 74666673 | LRRIQ3 | ENSG00000162620.11 | 3.712E-6 | 0 | -2802 | gtex_brain_putamen_basal |
| rs17591703 | 1 | 74666833 | LRRIQ3 | ENSG00000162620.11 | 3.742E-6 | 0 | -2962 | gtex_brain_putamen_basal |
| rs577367 | 1 | 74667686 | LRRIQ3 | ENSG00000162620.11 | 5.337E-11 | 0 | -3815 | gtex_brain_putamen_basal |
| rs487917 | 1 | 74668896 | LRRIQ3 | ENSG00000162620.11 | 5.337E-11 | 0 | -5025 | gtex_brain_putamen_basal |
| rs792307 | 1 | 74669000 | LRRIQ3 | ENSG00000162620.11 | 5.337E-11 | 0 | -5129 | gtex_brain_putamen_basal |
| rs200424875 | 1 | 74669081 | LRRIQ3 | ENSG00000162620.11 | 5.337E-11 | 0 | -5210 | gtex_brain_putamen_basal |
| rs35774726 | 1 | 74669082 | LRRIQ3 | ENSG00000162620.11 | 5.337E-11 | 0 | -5211 | gtex_brain_putamen_basal |
| rs813192 | 1 | 74669258 | LRRIQ3 | ENSG00000162620.11 | 5.312E-11 | 0 | -5387 | gtex_brain_putamen_basal |
| rs476350 | 1 | 74669307 | LRRIQ3 | ENSG00000162620.11 | 5.337E-11 | 0 | -5436 | gtex_brain_putamen_basal |
| rs12134868 | 1 | 74669513 | LRRIQ3 | ENSG00000162620.11 | 3.572E-10 | 0 | -5642 | gtex_brain_putamen_basal |
| rs12142236 | 1 | 74669710 | LRRIQ3 | ENSG00000162620.11 | 5.337E-11 | 0 | -5839 | gtex_brain_putamen_basal |
| rs11210431 | 1 | 74669770 | LRRIQ3 | ENSG00000162620.11 | 5.337E-11 | 0 | -5899 | gtex_brain_putamen_basal |
| rs9425023 | 1 | 74669911 | LRRIQ3 | ENSG00000162620.11 | 5.337E-11 | 0 | -6040 | gtex_brain_putamen_basal |
| rs12046751 | 1 | 74670172 | LRRIQ3 | ENSG00000162620.11 | 3.772E-6 | 0 | -6301 | gtex_brain_putamen_basal |
| rs571848 | 1 | 74671519 | LRRIQ3 | ENSG00000162620.11 | 5.337E-11 | 0 | -7648 | gtex_brain_putamen_basal |
| rs489941 | 1 | 74672323 | LRRIQ3 | ENSG00000162620.11 | 5.337E-11 | 0 | -8452 | gtex_brain_putamen_basal |
| rs491623 | 1 | 74672474 | LRRIQ3 | ENSG00000162620.11 | 5.337E-11 | 0 | -8603 | gtex_brain_putamen_basal |
| rs956 | 1 | 74672640 | LRRIQ3 | ENSG00000162620.11 | 5.337E-11 | 0 | -8769 | gtex_brain_putamen_basal |
| rs35920753 | 1 | 74673121 | LRRIQ3 | ENSG00000162620.11 | 5.337E-11 | 0 | -9250 | gtex_brain_putamen_basal |
| rs520806 | 1 | 74673341 | LRRIQ3 | ENSG00000162620.11 | 4.954E-11 | 0 | -9470 | gtex_brain_putamen_basal |
| rs522759 | 1 | 74673582 | LRRIQ3 | ENSG00000162620.11 | 5.337E-11 | 0 | -9711 | gtex_brain_putamen_basal |
| rs545664 | 1 | 74673777 | LRRIQ3 | ENSG00000162620.11 | 5.337E-11 | 0 | -9906 | gtex_brain_putamen_basal |
| rs545721 | 1 | 74673799 | LRRIQ3 | ENSG00000162620.11 | 5.337E-11 | 0 | -9928 | gtex_brain_putamen_basal |
| rs536355 | 1 | 74674176 | LRRIQ3 | ENSG00000162620.11 | 5.337E-11 | 0 | -10305 | gtex_brain_putamen_basal |
| rs553044 | 1 | 74674573 | LRRIQ3 | ENSG00000162620.11 | 5.337E-11 | 0 | -10702 | gtex_brain_putamen_basal |
| rs11210433 | 1 | 74675035 | LRRIQ3 | ENSG00000162620.11 | 3.772E-6 | 0 | -11164 | gtex_brain_putamen_basal |
| rs12410879 | 1 | 74675245 | LRRIQ3 | ENSG00000162620.11 | 3.772E-6 | 0 | -11374 | gtex_brain_putamen_basal |
| rs581353 | 1 | 74675386 | LRRIQ3 | ENSG00000162620.11 | 5.337E-11 | 0 | -11515 | gtex_brain_putamen_basal |
| rs496008 | 1 | 74675806 | LRRIQ3 | ENSG00000162620.11 | 5.337E-11 | 0 | -11935 | gtex_brain_putamen_basal |
| rs17526617 | 1 | 74675830 | LRRIQ3 | ENSG00000162620.11 | 4.486E-6 | 0 | -11959 | gtex_brain_putamen_basal |
| rs11210434 | 1 | 74677155 | LRRIQ3 | ENSG00000162620.11 | 5.985E-11 | 0 | -13284 | gtex_brain_putamen_basal |
| rs75942462 | 1 | 74677626 | LRRIQ3 | ENSG00000162620.11 | 4.501E-10 | 0 | -13755 | gtex_brain_putamen_basal |
| rs138041857 | 1 | 74677756 | LRRIQ3 | ENSG00000162620.11 | 5.337E-11 | 0 | -13885 | gtex_brain_putamen_basal |
| rs61778032 | 1 | 74677871 | LRRIQ3 | ENSG00000162620.11 | 5.337E-11 | 0 | -14000 | gtex_brain_putamen_basal |
| rs560808 | 1 | 74678233 | LRRIQ3 | ENSG00000162620.11 | 5.337E-11 | 0 | -14362 | gtex_brain_putamen_basal |
| rs485929 | 1 | 74678285 | LRRIQ3 | ENSG00000162620.11 | 6.124E-10 | 0 | -14414 | gtex_brain_putamen_basal |
| rs488813 | 1 | 74678604 | LRRIQ3 | ENSG00000162620.11 | 5.337E-11 | 0 | -14733 | gtex_brain_putamen_basal |
| rs67512020 | 1 | 74678624 | LRRIQ3 | ENSG00000162620.11 | 7.7E-11 | 0 | -14753 | gtex_brain_putamen_basal |
| rs35143797 | 1 | 74678628 | LRRIQ3 | ENSG00000162620.11 | 7.185E-9 | 0 | -14757 | gtex_brain_putamen_basal |
| rs477134 | 1 | 74678914 | LRRIQ3 | ENSG00000162620.11 | 5.335E-11 | 0 | -15043 | gtex_brain_putamen_basal |
| rs542136 | 1 | 74679860 | LRRIQ3 | ENSG00000162620.11 | 5.333E-11 | 0 | -15989 | gtex_brain_putamen_basal |
| rs545680 | 1 | 74680240 | LRRIQ3 | ENSG00000162620.11 | 1.501E-11 | 0 | -16369 | gtex_brain_putamen_basal |
| rs398053118 | 1 | 74681407 | LRRIQ3 | ENSG00000162620.11 | 5.25E-11 | 0 | -17536 | gtex_brain_putamen_basal |
| rs792321 | 1 | 74681968 | LRRIQ3 | ENSG00000162620.11 | 5.284E-11 | 0 | -18097 | gtex_brain_putamen_basal |
| rs524306 | 1 | 74682253 | LRRIQ3 | ENSG00000162620.11 | 5.302E-11 | 0 | -18382 | gtex_brain_putamen_basal |
| rs495027 | 1 | 74682259 | LRRIQ3 | ENSG00000162620.11 | 5.302E-11 | 0 | -18388 | gtex_brain_putamen_basal |
| rs17592507 | 1 | 74684851 | LRRIQ3 | ENSG00000162620.11 | 1.981E-6 | 0 | -20980 | gtex_brain_putamen_basal |
| rs504866 | 1 | 74685240 | LRRIQ3 | ENSG00000162620.11 | 5.328E-11 | 0 | -21369 | gtex_brain_putamen_basal |
| rs533371 | 1 | 74687012 | LRRIQ3 | ENSG00000162620.11 | 5.305E-11 | 0 | -23141 | gtex_brain_putamen_basal |
| rs567060 | 1 | 74688364 | LRRIQ3 | ENSG00000162620.11 | 2.282E-7 | 0 | -24493 | gtex_brain_putamen_basal |
| rs200573553 | 1 | 74689508 | LRRIQ3 | ENSG00000162620.11 | 2.937E-6 | 0 | -25637 | gtex_brain_putamen_basal |
| rs397825287 | 1 | 74689511 | LRRIQ3 | ENSG00000162620.11 | 2.57E-6 | 0 | -25640 | gtex_brain_putamen_basal |
| rs397694274 | 1 | 74689601 | LRRIQ3 | ENSG00000162620.11 | 2.521E-6 | 0 | -25730 | gtex_brain_putamen_basal |
| rs12024616 | 1 | 74690165 | LRRIQ3 | ENSG00000162620.11 | 2.513E-6 | 0 | -26294 | gtex_brain_putamen_basal |
| rs12031026 | 1 | 74693161 | LRRIQ3 | ENSG00000162620.11 | 2.51E-6 | 0 | -29290 | gtex_brain_putamen_basal |
| rs11210440 | 1 | 74693208 | LRRIQ3 | ENSG00000162620.11 | 2.285E-7 | 0 | -29337 | gtex_brain_putamen_basal |
| rs11210441 | 1 | 74693329 | LRRIQ3 | ENSG00000162620.11 | 3.135E-8 | 0 | -29458 | gtex_brain_putamen_basal |
| rs4650251 | 1 | 74693548 | LRRIQ3 | ENSG00000162620.11 | 2.285E-7 | 0 | -29677 | gtex_brain_putamen_basal |
| rs12038237 | 1 | 74693635 | LRRIQ3 | ENSG00000162620.11 | 2.51E-6 | 0 | -29764 | gtex_brain_putamen_basal |
| rs10890119 | 1 | 74695200 | LRRIQ3 | ENSG00000162620.11 | 2.286E-7 | 0 | -31329 | gtex_brain_putamen_basal |
| rs67394362 | 1 | 74695670 | LRRIQ3 | ENSG00000162620.11 | 2.427E-7 | 0 | -31799 | gtex_brain_putamen_basal |
| rs11210442 | 1 | 74695704 | LRRIQ3 | ENSG00000162620.11 | 2.948E-7 | 0 | -31833 | gtex_brain_putamen_basal |
| rs492302 | 1 | 74699331 | LRRIQ3 | ENSG00000162620.11 | 3.313E-7 | 0 | -35460 | gtex_brain_putamen_basal |
| rs474215 | 1 | 74700251 | LRRIQ3 | ENSG00000162620.11 | 3.318E-7 | 0 | -36380 | gtex_brain_putamen_basal |
| rs397789997 | 1 | 74700437 | LRRIQ3 | ENSG00000162620.11 | 1.543E-7 | 0 | -36566 | gtex_brain_putamen_basal |
| rs500203 | 1 | 74701651 | LRRIQ3 | ENSG00000162620.11 | 2.411E-7 | 0 | -37780 | gtex_brain_putamen_basal |
| rs532221 | 1 | 74701950 | LRRIQ3 | ENSG00000162620.11 | 2.391E-7 | 0 | -38079 | gtex_brain_putamen_basal |
| rs539534 | 1 | 74702737 | LRRIQ3 | ENSG00000162620.11 | 2.412E-7 | 0 | -38866 | gtex_brain_putamen_basal |
| rs531412 | 1 | 74702785 | LRRIQ3 | ENSG00000162620.11 | 2.412E-7 | 0 | -38914 | gtex_brain_putamen_basal |
| rs9970514 | 1 | 74703758 | LRRIQ3 | ENSG00000162620.11 | 2.32E-6 | 0 | -39887 | gtex_brain_putamen_basal |
| rs568049 | 1 | 74704503 | LRRIQ3 | ENSG00000162620.11 | 2.416E-7 | 0 | -40632 | gtex_brain_putamen_basal |
| rs11210443 | 1 | 74704513 | LRRIQ3 | ENSG00000162620.11 | 2.52E-6 | 0 | -40642 | gtex_brain_putamen_basal |
| rs3765651 | 1 | 74709362 | LRRIQ3 | ENSG00000162620.11 | 2.414E-7 | 0 | -45491 | gtex_brain_putamen_basal |
| rs3765654 | 1 | 74709711 | LRRIQ3 | ENSG00000162620.11 | 2.664E-6 | 0 | -45840 | gtex_brain_putamen_basal |
| rs481387 | 1 | 74710450 | LRRIQ3 | ENSG00000162620.11 | 2.416E-7 | 0 | -46579 | gtex_brain_putamen_basal |
| rs483259 | 1 | 74710629 | LRRIQ3 | ENSG00000162620.11 | 2.846E-7 | 0 | -46758 | gtex_brain_putamen_basal |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
No co-expressed genes in brain regions
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| SENGUPTA NASOPHARYNGEAL CARCINOMA DN | 349 | 157 | All SZGR 2.0 genes in this pathway |
| DODD NASOPHARYNGEAL CARCINOMA UP | 1821 | 933 | All SZGR 2.0 genes in this pathway |
| KYNG WERNER SYNDROM AND NORMAL AGING DN | 225 | 124 | All SZGR 2.0 genes in this pathway |