Gene Page: ARL9
Summary ?
| GeneID | 132946 |
| Symbol | ARL9 |
| Synonyms | - |
| Description | ADP ribosylation factor like GTPase 9 |
| Reference | MIM:612405|HGNC:HGNC:23592|HPRD:12486| |
| Gene type | protein-coding |
| Map location | 4q12 |
| Pascal p-value | 0.047 |
| eGene | Myers' cis & trans |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:PGCnp | Genome-wide Association Study | GWAS |
Section I. Genetics and epigenetics annotation
eQTL annotation
| SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
|---|---|---|---|---|---|---|---|---|
| rs17130377 | chr1 | 88759342 | ARL9 | 132946 | 0.18 | trans | ||
| rs2485584 | chr1 | 237315022 | ARL9 | 132946 | 0.12 | trans | ||
| rs2151543 | chr1 | 242862897 | ARL9 | 132946 | 0.14 | trans | ||
| rs11175593 | chr12 | 40601939 | ARL9 | 132946 | 0.07 | trans | ||
| rs6018169 | chr20 | 45546327 | ARL9 | 132946 | 0.14 | trans | ||
| rs6018172 | chr20 | 45547742 | ARL9 | 132946 | 0.12 | trans |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
No co-expressed genes in brain regions
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| BENPORATH SUZ12 TARGETS | 1038 | 678 | All SZGR 2.0 genes in this pathway |
| BENPORATH EED TARGETS | 1062 | 725 | All SZGR 2.0 genes in this pathway |
| BENPORATH ES WITH H3K27ME3 | 1118 | 744 | All SZGR 2.0 genes in this pathway |
| BENPORATH PRC2 TARGETS | 652 | 441 | All SZGR 2.0 genes in this pathway |