Summary ?
GeneID133308
SymbolSLC9B2
SynonymsNHA2|NHE10|NHEDC2
Descriptionsolute carrier family 9 member B2
ReferenceMIM:611789|HGNC:HGNC:25143|Ensembl:ENSG00000164038|HPRD:14051|Vega:OTTHUMG00000131125
Gene typeprotein-coding
Map location4q24
Pascal p-value6.86E-5

Gene in Data Sources
Gene set name Method of gene setDescriptionInfo
CV:PGCnpGenome-wide Association StudyGWAS

Section I. Genetics and epigenetics annotation

@eQTL annotation

SNP IDChromosomePositioneGeneGene Entrez IDpvalueqvalueTSS distanceeQTL type
rs17131472chr191962966NHEDC21333080.02trans
rs6739534chr251702264NHEDC21333080.12trans
rs17821815chr2119018522NHEDC21333080.09trans
rs2922180chr3125280472NHEDC21333083.159E-5trans
rs2971271chr3125450402NHEDC21333080.02trans
rs2976809chr3125451738NHEDC21333084.751E-5trans
rs16849258chr3165317775NHEDC21333080.15trans
rs3106445chr3165326464NHEDC21333080.06trans
rs11999150NHEDC21333080.14trans
rs520325chr3165361016NHEDC21333080.03trans
rs10050805chr530805352NHEDC21333080.01trans
rs16896071chr566267342NHEDC21333080.03trans
rs17056435chr5158453782NHEDC21333080.11trans
rs6455226chr667930295NHEDC21333080.01trans
rs10273901chr7131828566NHEDC21333080.14trans
rs714131chr817992832NHEDC21333080.12trans
rs2739726chr817998576NHEDC21333080.07trans
rs2305164chr12365649NHEDC21333080.2trans
rs10879027chr1270237156NHEDC21333080.01trans
rs9529974chr1372821935NHEDC21333080.13trans
rs17073665chr1381541961NHEDC21333080.06trans
rs17244419chr1497171074NHEDC21333080.04trans
rs16976022chr1555454260NHEDC21333080.07trans
rs16976029chr1555455268NHEDC21333080.05trans
rs16976036chr1555456921NHEDC21333080.16trans
rs8034402chr1555480932NHEDC21333080.19trans
rs13380712chr1625601181NHEDC21333080trans
rs17841422chr1720969134NHEDC21333080.01trans
rs11873703chr1861448702NHEDC21333080.01trans
rs6095741chr2048666589NHEDC21333083.524E-4trans
rs5991662chrX43335796NHEDC21333080.02trans

Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

No co-expressed genes in brain regions


Section V. Pathway annotation

Pathway namePathway size# SZGR 2.0 genes in pathwayInfo
LINDGREN BLADDER CANCER WITH LOH IN CHR9Q 11671All SZGR 2.0 genes in this pathway
LIANG HEMATOPOIESIS STEM CELL NUMBER SMALL VS HUGE DN 3322All SZGR 2.0 genes in this pathway
IVANOVA HEMATOPOIESIS STEM CELL LONG TERM 302191All SZGR 2.0 genes in this pathway
MOLENAAR TARGETS OF CCND1 AND CDK4 UP 6748All SZGR 2.0 genes in this pathway
WONG ADULT TISSUE STEM MODULE 721492All SZGR 2.0 genes in this pathway
MIKKELSEN ES ICP WITH H3K4ME3 718401All SZGR 2.0 genes in this pathway