Gene Page: TRIM16L
Summary ?
| GeneID | 147166 |
| Symbol | TRIM16L |
| Synonyms | TRIM70 |
| Description | tripartite motif containing 16-like |
| Reference | HGNC:HGNC:32670|Ensembl:ENSG00000108448|HPRD:18731|Vega:OTTHUMG00000059050 |
| Gene type | protein-coding |
| Map location | 17p11.2 |
| Pascal p-value | 0.012 |
| eGene | Anterior cingulate cortex BA24 |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:PGCnp | Genome-wide Association Study | GWAS |
Section I. Genetics and epigenetics annotation
eQTL annotation
| SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
|---|---|---|---|---|---|---|---|---|
| rs9912644 | 17 | 18565350 | TRIM16L | ENSG00000108448.16 | 1.33029E-6 | 0.01 | -35961 | gtex_brain_ba24 |
| rs113236482 | 17 | 18569799 | TRIM16L | ENSG00000108448.16 | 7.83681E-7 | 0.01 | -31512 | gtex_brain_ba24 |
| rs9635701 | 17 | 18574998 | TRIM16L | ENSG00000108448.16 | 2.27724E-7 | 0.01 | -26313 | gtex_brain_ba24 |
| rs77421625 | 17 | 18577380 | TRIM16L | ENSG00000108448.16 | 4.17617E-7 | 0.01 | -23931 | gtex_brain_ba24 |
| rs72637396 | 17 | 18585587 | TRIM16L | ENSG00000108448.16 | 1.71732E-6 | 0.01 | -15724 | gtex_brain_ba24 |
| rs1973459 | 17 | 18610134 | TRIM16L | ENSG00000108448.16 | 1.16358E-6 | 0.01 | 8823 | gtex_brain_ba24 |
| rs9898266 | 17 | 18618093 | TRIM16L | ENSG00000108448.16 | 5.86264E-7 | 0.01 | 16782 | gtex_brain_ba24 |
| rs7220364 | 17 | 18626014 | TRIM16L | ENSG00000108448.16 | 1.27758E-7 | 0.01 | 24703 | gtex_brain_ba24 |
| rs3785638 | 17 | 18628678 | TRIM16L | ENSG00000108448.16 | 1.68295E-6 | 0.01 | 27367 | gtex_brain_ba24 |
| rs3785640 | 17 | 18629340 | TRIM16L | ENSG00000108448.16 | 1.46171E-6 | 0.01 | 28029 | gtex_brain_ba24 |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
No co-expressed genes in brain regions
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| ODONNELL TFRC TARGETS UP | 456 | 228 | All SZGR 2.0 genes in this pathway |
| LU EZH2 TARGETS UP | 295 | 155 | All SZGR 2.0 genes in this pathway |
| BOSCO EPITHELIAL DIFFERENTIATION MODULE | 69 | 31 | All SZGR 2.0 genes in this pathway |
| ZWANG TRANSIENTLY UP BY 1ST EGF PULSE ONLY | 1839 | 928 | All SZGR 2.0 genes in this pathway |