Summary ?
GeneID154197
SymbolPNLDC1
Synonyms-
DescriptionPARN like, ribonuclease domain containing 1
ReferenceHGNC:HGNC:21185|Ensembl:ENSG00000146453|HPRD:17868|Vega:OTTHUMG00000015941
Gene typeprotein-coding
Map location6q25.3
Pascal p-value0.009
eGeneAnterior cingulate cortex BA24
Caudate basal ganglia
Hippocampus
Hypothalamus
Nucleus accumbens basal ganglia
Meta

Gene in Data Sources
Gene set name Method of gene setDescriptionInfo
CV:PGCnpGenome-wide Association StudyGWAS

Section I. Genetics and epigenetics annotation

@eQTL annotation

SNP IDChromosomePositioneGeneGene Entrez IDpvalueqvalueTSS distanceeQTL type
rs117576816160211728PNLDC1ENSG00000146453.86.786E-70.01-9570gtex_brain_ba24
rs18532566160212844PNLDC1ENSG00000146453.81.062E-60.01-8454gtex_brain_ba24
rs13224266160213055PNLDC1ENSG00000146453.89.247E-70.01-8243gtex_brain_ba24
rs9274516160213436PNLDC1ENSG00000146453.89.247E-70.01-7862gtex_brain_ba24
rs69072036160213872PNLDC1ENSG00000146453.89.253E-70.01-7426gtex_brain_ba24
rs558083116160213987PNLDC1ENSG00000146453.89.253E-70.01-7311gtex_brain_ba24
rs561083226160214060PNLDC1ENSG00000146453.89.253E-70.01-7238gtex_brain_ba24
rs357564606160214093PNLDC1ENSG00000146453.89.253E-70.01-7205gtex_brain_ba24
rs350727446160214137PNLDC1ENSG00000146453.89.081E-70.01-7161gtex_brain_ba24
rs346318736160214142PNLDC1ENSG00000146453.89.253E-70.01-7156gtex_brain_ba24
rs117524796160214817PNLDC1ENSG00000146453.81.753E-70.01-6481gtex_brain_ba24
rs361121046160215401PNLDC1ENSG00000146453.89.258E-70.01-5897gtex_brain_ba24
rs117565156160217727PNLDC1ENSG00000146453.89.258E-70.01-3571gtex_brain_ba24
rs117549266160217888PNLDC1ENSG00000146453.89.258E-70.01-3410gtex_brain_ba24
rs558212716160218049PNLDC1ENSG00000146453.89.258E-70.01-3249gtex_brain_ba24
rs37774236160218605PNLDC1ENSG00000146453.89.258E-70.01-2693gtex_brain_ba24
rs23424796160218957PNLDC1ENSG00000146453.89.258E-70.01-2341gtex_brain_ba24
rs47396160219337PNLDC1ENSG00000146453.89.258E-70.01-1961gtex_brain_ba24
rs132027936160219640PNLDC1ENSG00000146453.89.258E-70.01-1658gtex_brain_ba24
rs3978109086160220494PNLDC1ENSG00000146453.89.258E-70.01-804gtex_brain_ba24
rs1408527476160220495PNLDC1ENSG00000146453.89.258E-70.01-803gtex_brain_ba24
rs132096786160221015PNLDC1ENSG00000146453.89.258E-70.01-283gtex_brain_ba24
rs131961396160221190PNLDC1ENSG00000146453.89.258E-70.01-108gtex_brain_ba24
rs3977893726160221992PNLDC1ENSG00000146453.89.258E-70.01694gtex_brain_ba24
rs47093736160222477PNLDC1ENSG00000146453.89.258E-70.011179gtex_brain_ba24
rs47093746160222524PNLDC1ENSG00000146453.89.258E-70.011226gtex_brain_ba24
rs117563246160222684PNLDC1ENSG00000146453.89.258E-70.011386gtex_brain_ba24
rs117546936160222693PNLDC1ENSG00000146453.89.258E-70.011395gtex_brain_ba24
rs354149546160222818PNLDC1ENSG00000146453.89.258E-70.011520gtex_brain_ba24
rs560154096160223168PNLDC1ENSG00000146453.89.258E-70.011870gtex_brain_ba24
rs47093756160223618PNLDC1ENSG00000146453.81.807E-60.012320gtex_brain_ba24
rs125247646160223900PNLDC1ENSG00000146453.89.258E-70.012602gtex_brain_ba24
rs11096006160224543PNLDC1ENSG00000146453.89.258E-70.013245gtex_brain_ba24
rs354355436160225012PNLDC1ENSG00000146453.89.258E-70.013714gtex_brain_ba24
rs117577836160225463PNLDC1ENSG00000146453.89.273E-70.014165gtex_brain_ba24
rs117567456160226025PNLDC1ENSG00000146453.89.274E-70.014727gtex_brain_ba24
rs358726756160229889PNLDC1ENSG00000146453.81.593E-60.018591gtex_brain_ba24

Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

No co-expressed genes in brain regions


Section V. Pathway annotation

Pathway namePathway size# SZGR 2.0 genes in pathwayInfo
DODD NASOPHARYNGEAL CARCINOMA UP 1821933All SZGR 2.0 genes in this pathway