Gene Page: RANBP3L
Summary ?
| GeneID | 202151 |
| Symbol | RANBP3L |
| Synonyms | - |
| Description | RAN binding protein 3 like |
| Reference | MIM:616391|HGNC:HGNC:26353|Ensembl:ENSG00000164188|HPRD:08064|Vega:OTTHUMG00000131110 |
| Gene type | protein-coding |
| Map location | 5p13.2 |
| Pascal p-value | 0.008 |
| Sherlock p-value | 0.113 |
| DMG | 1 (# studies) |
| eGene | Hippocampus Myers' cis & trans Meta |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:PGCnp | Genome-wide Association Study | GWAS | |
| DMG:Montano_2016 | Genome-wide DNA methylation analysis | This dataset includes 172 replicated associations between CpGs with schizophrenia. | 1 |
Section I. Genetics and epigenetics annotation
Differentially methylated gene
| Probe | Chromosome | Position | Nearest gene | P (dis) | Beta (dis) | FDR (dis) | Study |
|---|---|---|---|---|---|---|---|
| cg20384132 | 5 | 36302349 | RANBP3L | 4.39E-5 | 0.009 | 0.091 | DMG:Montano_2016 |
eQTL annotation
| SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
|---|---|---|---|---|---|---|---|---|
| rs6863707 | chr5 | 36206827 | RANBP3L | 202151 | 0.16 | cis | ||
| rs6451268 | chr5 | 36255363 | RANBP3L | 202151 | 0.15 | cis | ||
| rs6897135 | chr5 | 36272563 | RANBP3L | 202151 | 0.01 | cis |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.