Gene Page: ARMC3

Summary ?
GeneID219681
SymbolARMC3
SynonymsCT81|KU-CT-1
Descriptionarmadillo repeat containing 3
ReferenceMIM:611226|HGNC:HGNC:30964|Ensembl:ENSG00000165309|HPRD:12487|Vega:OTTHUMG00000017811
Gene typeprotein-coding
Map location10p12.31
Pascal p-value0.205
Fetal beta-0.497
DMG1 (# studies)
eGeneMyers' cis & trans

Gene in Data Sources
Gene set name Method of gene setDescriptionInfo
CV:PGCnpGenome-wide Association StudyGWAS
DMG:Wockner_2014Genome-wide DNA methylation analysisThis dataset includes 4641 differentially methylated probes corresponding to 2929 unique genes between schizophrenia patients (n=24) and controls (n=24). 1

Section I. Genetics and epigenetics annotation

@Differentially methylated gene

ProbeChromosomePositionNearest geneP (dis)Beta (dis)FDR (dis)Study
cg168193921023326418ARMC34.347E-4-0.6740.045DMG:Wockner_2014

@eQTL annotation

SNP IDChromosomePositioneGeneGene Entrez IDpvalueqvalueTSS distanceeQTL type
rs4294953chr2154365614ARMC32196810.16trans
rs9681394chr343256230ARMC32196810.03trans
rs9882567chr3188988929ARMC32196810.11trans
rs1981925chr434348578ARMC32196811.832E-5trans
rs2291715chr475485871ARMC32196810.12trans
rs6836195chr4120756689ARMC32196810.04trans
rs10075513chr5117091552ARMC32196810.11trans
rs2268637chr639050917ARMC32196810trans
rs10953482chr7105548000ARMC32196810.17trans
rs2524878chr7125222418ARMC32196810.09trans
rs2524880chr7125222519ARMC32196810.14trans
rs10958899chr910128700ARMC32196810.03trans
rs10958907chr910131580ARMC32196810.03trans
rs1322159chr910132695ARMC32196810.02trans
rs10958910chr910134759ARMC32196810.04trans
rs2140736chr1531159211ARMC32196810.04trans
rs11656351chr179489574ARMC32196810.02trans
rs11080561chr1812257229ARMC32196810.1trans
rs16951170chr1847402487ARMC32196810.02trans
rs7268640chr2047150267ARMC32196811.158E-5trans

Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression during devlopment (BrainCloud)

Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

No co-expressed genes in brain regions


Section V. Pathway annotation

Pathway namePathway size# SZGR 2.0 genes in pathwayInfo
SENGUPTA NASOPHARYNGEAL CARCINOMA DN 349157All SZGR 2.0 genes in this pathway
DODD NASOPHARYNGEAL CARCINOMA UP 1821933All SZGR 2.0 genes in this pathway
CREIGHTON ENDOCRINE THERAPY RESISTANCE 2 473224All SZGR 2.0 genes in this pathway
ACEVEDO LIVER CANCER WITH H3K9ME3 UP 14175All SZGR 2.0 genes in this pathway
ACEVEDO METHYLATED IN LIVER CANCER DN 940425All SZGR 2.0 genes in this pathway
CHEN METABOLIC SYNDROM NETWORK 1210725All SZGR 2.0 genes in this pathway
MIKKELSEN ES ICP WITH H3K4ME3 718401All SZGR 2.0 genes in this pathway
NOUSHMEHR GBM SILENCED BY METHYLATION 5032All SZGR 2.0 genes in this pathway
RAO BOUND BY SALL4 ISOFORM A 182108All SZGR 2.0 genes in this pathway
ZWANG TRANSIENTLY UP BY 1ST EGF PULSE ONLY 1839928All SZGR 2.0 genes in this pathway