Summary ?
GeneID23600
SymbolAMACR
SynonymsAMACRD|CBAS4|RACE|RM
Descriptionalpha-methylacyl-CoA racemase
ReferenceMIM:604489|HGNC:HGNC:451|Ensembl:ENSG00000242110|HPRD:05134|Vega:OTTHUMG00000090734
Gene typeprotein-coding
Map location5p13
Pascal p-value0.739
Sherlock p-value0.915
eGeneAnterior cingulate cortex BA24
Caudate basal ganglia
Cerebellar Hemisphere
Cerebellum
Cortex
Frontal Cortex BA9
Hippocampus
Hypothalamus
Nucleus accumbens basal ganglia
Putamen basal ganglia
Myers' cis & trans
Meta

Gene in Data Sources
Gene set name Method of gene setDescriptionInfo
PMID:cooccurHigh-throughput literature-searchSystematic search in PubMed for genes co-occurring with SCZ keywords. A total of 3027 genes were included.
LiteratureHigh-throughput literature-searchCo-occurance with Schizophrenia keywords: schizophrenia,schizophreniasClick to show details

Section I. Genetics and epigenetics annotation

@eQTL annotation

SNP IDChromosomePositioneGeneGene Entrez IDpvalueqvalueTSS distanceeQTL type
rs168803chr533995704AMACR236001.235E-5cis
rs840399chr534015680AMACR236007.743E-5cis
rs840391chr534018503AMACR236000.03cis
rs971074chr4100341860AMACR236000.14trans
rs168803chr533995704AMACR236000trans
rs840399chr534015680AMACR236000.01trans
rs253189533993865AMACRENSG00000242110.36.586E-8014355gtex_brain_ba24
rs10472909533994116AMACRENSG00000242110.33.001E-9014104gtex_brain_ba24
rs11742345533994316AMACRENSG00000242110.31.317E-9013904gtex_brain_ba24
rs168803533995705AMACRENSG00000242110.37.795E-8012515gtex_brain_ba24
rs9918189533996454AMACRENSG00000242110.38.832E-10011766gtex_brain_ba24
rs10941110533999079AMACRENSG00000242110.31.819E-1009141gtex_brain_ba24
rs10941112534004707AMACRENSG00000242110.31.535E-1003513gtex_brain_ba24
rs386403520534005414AMACRENSG00000242110.37.773E-1002806gtex_brain_ba24
rs3195676534008100AMACRENSG00000242110.37.791E-100120gtex_brain_ba24
rs3217251534008206AMACRENSG00000242110.37.663E-10014gtex_brain_ba24
rs6875926534012492AMACRENSG00000242110.38.021E-100-4272gtex_brain_ba24
rs253200534012564AMACRENSG00000242110.38.802E-80-4344gtex_brain_ba24
rs194126534014022AMACRENSG00000242110.32.147E-90-5802gtex_brain_ba24
rs253202534015174AMACRENSG00000242110.31.671E-70-6954gtex_brain_ba24
rs840399534015681AMACRENSG00000242110.33.317E-70-7461gtex_brain_ba24
rs840398534016023AMACRENSG00000242110.33.317E-70-7803gtex_brain_ba24
rs840397534016138AMACRENSG00000242110.31.504E-70-7918gtex_brain_ba24
rs840396534016484AMACRENSG00000242110.31.945E-70-8264gtex_brain_ba24
rs840395534016554AMACRENSG00000242110.36.333E-70-8334gtex_brain_ba24
rs840391534018504AMACRENSG00000242110.32.589E-60-10284gtex_brain_ba24
rs840389534018684AMACRENSG00000242110.32.586E-60-10464gtex_brain_ba24
rs840388534018890AMACRENSG00000242110.32.586E-60-10670gtex_brain_ba24
rs840387534019048AMACRENSG00000242110.32.586E-60-10828gtex_brain_ba24
rs840385534020358AMACRENSG00000242110.32.586E-60-12138gtex_brain_ba24
rs840382534021706AMACRENSG00000242110.32.567E-60-13486gtex_brain_ba24
rs10941113534026756AMACRENSG00000242110.37.564E-70-18536gtex_brain_ba24
rs7721230533992529AMACRENSG00000242110.33.04E-6015691gtex_brain_putamen_basal
rs253189533993865AMACRENSG00000242110.31.572E-6014355gtex_brain_putamen_basal
rs10472909533994116AMACRENSG00000242110.31.05E-8014104gtex_brain_putamen_basal
rs11742345533994316AMACRENSG00000242110.35.599E-9013904gtex_brain_putamen_basal
rs168803533995705AMACRENSG00000242110.31.446E-7012515gtex_brain_putamen_basal
rs9918189533996454AMACRENSG00000242110.31.333E-10011766gtex_brain_putamen_basal
rs10941110533999079AMACRENSG00000242110.36.441E-1109141gtex_brain_putamen_basal
rs10941112534004707AMACRENSG00000242110.33.134E-1003513gtex_brain_putamen_basal
rs386403520534005414AMACRENSG00000242110.35.633E-1002806gtex_brain_putamen_basal
rs3195676534008100AMACRENSG00000242110.35.633E-100120gtex_brain_putamen_basal
rs3217251534008206AMACRENSG00000242110.31.486E-9014gtex_brain_putamen_basal
rs6875926534012492AMACRENSG00000242110.35.669E-100-4272gtex_brain_putamen_basal
rs253200534012564AMACRENSG00000242110.31.058E-60-4344gtex_brain_putamen_basal
rs194126534014022AMACRENSG00000242110.33.254E-70-5802gtex_brain_putamen_basal
rs10941113534026756AMACRENSG00000242110.32.838E-60-18536gtex_brain_putamen_basal

Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

No co-expressed genes in brain regions


Section V. Pathway annotation

Pathway namePathway size# SZGR 2.0 genes in pathwayInfo
KEGG PRIMARY BILE ACID BIOSYNTHESIS 169All SZGR 2.0 genes in this pathway
KEGG PEROXISOME 7847All SZGR 2.0 genes in this pathway
REACTOME BILE ACID AND BILE SALT METABOLISM 2711All SZGR 2.0 genes in this pathway
REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 7ALPHA HYDROXYCHOLESTEROL 156All SZGR 2.0 genes in this pathway
REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 24 HYDROXYCHOLESTEROL 106All SZGR 2.0 genes in this pathway
REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS 199All SZGR 2.0 genes in this pathway
REACTOME PEROXISOMAL LIPID METABOLISM 2111All SZGR 2.0 genes in this pathway
REACTOME METABOLISM OF LIPIDS AND LIPOPROTEINS 478302All SZGR 2.0 genes in this pathway
LIU PROSTATE CANCER UP 9657All SZGR 2.0 genes in this pathway
DACOSTA UV RESPONSE VIA ERCC3 TTD UP 6439All SZGR 2.0 genes in this pathway
FARMER BREAST CANCER APOCRINE VS BASAL 330217All SZGR 2.0 genes in this pathway
FARMER BREAST CANCER BASAL VS LULMINAL 330215All SZGR 2.0 genes in this pathway
AMUNDSON GENOTOXIC SIGNATURE 10568All SZGR 2.0 genes in this pathway
TOMLINS PROSTATE CANCER UP 4027All SZGR 2.0 genes in this pathway
SMITH LIVER CANCER 4527All SZGR 2.0 genes in this pathway
HOWLIN CITED1 TARGETS 1 DN 3722All SZGR 2.0 genes in this pathway
HOWLIN CITED1 TARGETS 2 DN 1711All SZGR 2.0 genes in this pathway
WALLACE PROSTATE CANCER UP 2014All SZGR 2.0 genes in this pathway
OUYANG PROSTATE CANCER MARKERS 1916All SZGR 2.0 genes in this pathway
MOOTHA HUMAN MITODB 6 2002 429260All SZGR 2.0 genes in this pathway
MOOTHA PGC 420269All SZGR 2.0 genes in this pathway
LEE LIVER CANCER SURVIVAL UP 185112All SZGR 2.0 genes in this pathway
MOOTHA MITOCHONDRIA 447277All SZGR 2.0 genes in this pathway
CHIANG LIVER CANCER SUBCLASS CTNNB1 UP 176110All SZGR 2.0 genes in this pathway
CHIANG LIVER CANCER SUBCLASS INTERFERON DN 5230All SZGR 2.0 genes in this pathway
MOOTHA FFA OXYDATION 2213All SZGR 2.0 genes in this pathway
WIERENGA STAT5A TARGETS UP 217131All SZGR 2.0 genes in this pathway
WIERENGA STAT5A TARGETS GROUP1 13676All SZGR 2.0 genes in this pathway
BRUINS UVC RESPONSE LATE 1137655All SZGR 2.0 genes in this pathway
DELACROIX RAR BOUND ES 462273All SZGR 2.0 genes in this pathway