Gene Page: MCOLN2
Summary ?
| GeneID | 255231 |
| Symbol | MCOLN2 |
| Synonyms | TRP-ML2|TRPML2 |
| Description | mucolipin 2 |
| Reference | MIM:607399|HGNC:HGNC:13357|Ensembl:ENSG00000153898|HPRD:09584|Vega:OTTHUMG00000009954 |
| Gene type | protein-coding |
| Map location | 1p22 |
| Pascal p-value | 0.025 |
| eGene | Anterior cingulate cortex BA24 Caudate basal ganglia Cortex Frontal Cortex BA9 Nucleus accumbens basal ganglia Putamen basal ganglia Meta |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:PGCnp | Genome-wide Association Study | GWAS |
Section I. Genetics and epigenetics annotation
eQTL annotation
| SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
|---|---|---|---|---|---|---|---|---|
| rs12129308 | 1 | 85423720 | MCOLN2 | ENSG00000153898.8 | 1.479E-6 | 0.01 | 39076 | gtex_brain_ba24 |
| rs2031480 | 1 | 85426664 | MCOLN2 | ENSG00000153898.8 | 1.479E-6 | 0.01 | 36132 | gtex_brain_ba24 |
| rs4907015 | 1 | 85430710 | MCOLN2 | ENSG00000153898.8 | 1.479E-6 | 0.01 | 32086 | gtex_brain_ba24 |
| rs12146119 | 1 | 85434536 | MCOLN2 | ENSG00000153898.8 | 1.479E-6 | 0.01 | 28260 | gtex_brain_ba24 |
| rs11800103 | 1 | 85435975 | MCOLN2 | ENSG00000153898.8 | 1.479E-6 | 0.01 | 26821 | gtex_brain_ba24 |
| rs513430 | 1 | 85439059 | MCOLN2 | ENSG00000153898.8 | 2.074E-6 | 0.01 | 23737 | gtex_brain_ba24 |
| rs679167 | 1 | 85439147 | MCOLN2 | ENSG00000153898.8 | 2.074E-6 | 0.01 | 23649 | gtex_brain_ba24 |
| rs488710 | 1 | 85439454 | MCOLN2 | ENSG00000153898.8 | 2.074E-6 | 0.01 | 23342 | gtex_brain_ba24 |
| rs486751 | 1 | 85439669 | MCOLN2 | ENSG00000153898.8 | 2.074E-6 | 0.01 | 23127 | gtex_brain_ba24 |
| rs11799554 | 1 | 85440213 | MCOLN2 | ENSG00000153898.8 | 1.479E-6 | 0.01 | 22583 | gtex_brain_ba24 |
| rs532185 | 1 | 85440793 | MCOLN2 | ENSG00000153898.8 | 1.592E-6 | 0.01 | 22003 | gtex_brain_ba24 |
| rs531423 | 1 | 85440837 | MCOLN2 | ENSG00000153898.8 | 2.074E-6 | 0.01 | 21959 | gtex_brain_ba24 |
| rs530486 | 1 | 85440917 | MCOLN2 | ENSG00000153898.8 | 2.074E-6 | 0.01 | 21879 | gtex_brain_ba24 |
| rs12140467 | 1 | 85441702 | MCOLN2 | ENSG00000153898.8 | 1.454E-6 | 0.01 | 21094 | gtex_brain_ba24 |
| rs662948 | 1 | 85442806 | MCOLN2 | ENSG00000153898.8 | 2.074E-6 | 0.01 | 19990 | gtex_brain_ba24 |
| rs495786 | 1 | 85443420 | MCOLN2 | ENSG00000153898.8 | 2.749E-6 | 0.01 | 19376 | gtex_brain_ba24 |
| rs648660 | 1 | 85443519 | MCOLN2 | ENSG00000153898.8 | 2.074E-6 | 0.01 | 19277 | gtex_brain_ba24 |
| rs499539 | 1 | 85443830 | MCOLN2 | ENSG00000153898.8 | 2.074E-6 | 0.01 | 18966 | gtex_brain_ba24 |
| rs201617492 | 1 | 85444097 | MCOLN2 | ENSG00000153898.8 | 1.618E-6 | 0.01 | 18699 | gtex_brain_ba24 |
| rs2486755 | 1 | 85444245 | MCOLN2 | ENSG00000153898.8 | 2.074E-6 | 0.01 | 18551 | gtex_brain_ba24 |
| rs10873669 | 1 | 85444401 | MCOLN2 | ENSG00000153898.8 | 2.074E-6 | 0.01 | 18395 | gtex_brain_ba24 |
| rs11485284 | 1 | 85444746 | MCOLN2 | ENSG00000153898.8 | 2.074E-6 | 0.01 | 18050 | gtex_brain_ba24 |
| rs12091131 | 1 | 85444929 | MCOLN2 | ENSG00000153898.8 | 2.074E-6 | 0.01 | 17867 | gtex_brain_ba24 |
| rs11161495 | 1 | 85445031 | MCOLN2 | ENSG00000153898.8 | 2.074E-6 | 0.01 | 17765 | gtex_brain_ba24 |
| rs10873670 | 1 | 85445384 | MCOLN2 | ENSG00000153898.8 | 2.074E-6 | 0.01 | 17412 | gtex_brain_ba24 |
| rs11161496 | 1 | 85445746 | MCOLN2 | ENSG00000153898.8 | 2.22E-6 | 0.01 | 17050 | gtex_brain_ba24 |
| rs11161497 | 1 | 85446687 | MCOLN2 | ENSG00000153898.8 | 1.548E-6 | 0.01 | 16109 | gtex_brain_ba24 |
| rs397863428 | 1 | 85447634 | MCOLN2 | ENSG00000153898.8 | 7.98E-7 | 0.01 | 15162 | gtex_brain_ba24 |
| rs4907017 | 1 | 85447659 | MCOLN2 | ENSG00000153898.8 | 7.98E-7 | 0.01 | 15137 | gtex_brain_ba24 |
| rs4907018 | 1 | 85447663 | MCOLN2 | ENSG00000153898.8 | 7.82E-7 | 0.01 | 15133 | gtex_brain_ba24 |
| rs12751315 | 1 | 85448349 | MCOLN2 | ENSG00000153898.8 | 7.98E-7 | 0.01 | 14447 | gtex_brain_ba24 |
| rs12730688 | 1 | 85448351 | MCOLN2 | ENSG00000153898.8 | 7.98E-7 | 0.01 | 14445 | gtex_brain_ba24 |
| rs537638394 | 1 | 85448947 | MCOLN2 | ENSG00000153898.8 | 7.438E-7 | 0.01 | 13849 | gtex_brain_ba24 |
| rs6685363 | 1 | 85449080 | MCOLN2 | ENSG00000153898.8 | 7.98E-7 | 0.01 | 13716 | gtex_brain_ba24 |
| rs6576735 | 1 | 85449219 | MCOLN2 | ENSG00000153898.8 | 7.98E-7 | 0.01 | 13577 | gtex_brain_ba24 |
| rs6576736 | 1 | 85449251 | MCOLN2 | ENSG00000153898.8 | 7.98E-7 | 0.01 | 13545 | gtex_brain_ba24 |
| rs7549346 | 1 | 85449649 | MCOLN2 | ENSG00000153898.8 | 7.98E-7 | 0.01 | 13147 | gtex_brain_ba24 |
| rs7541684 | 1 | 85449697 | MCOLN2 | ENSG00000153898.8 | 7.98E-7 | 0.01 | 13099 | gtex_brain_ba24 |
| rs11161499 | 1 | 85450320 | MCOLN2 | ENSG00000153898.8 | 7.98E-7 | 0.01 | 12476 | gtex_brain_ba24 |
| rs6691674 | 1 | 85450627 | MCOLN2 | ENSG00000153898.8 | 7.957E-7 | 0.01 | 12169 | gtex_brain_ba24 |
| rs6691970 | 1 | 85450920 | MCOLN2 | ENSG00000153898.8 | 7.98E-7 | 0.01 | 11876 | gtex_brain_ba24 |
| rs6677091 | 1 | 85451087 | MCOLN2 | ENSG00000153898.8 | 8.978E-7 | 0.01 | 11709 | gtex_brain_ba24 |
| rs6700622 | 1 | 85451143 | MCOLN2 | ENSG00000153898.8 | 7.98E-7 | 0.01 | 11653 | gtex_brain_ba24 |
| rs67529032 | 1 | 85453471 | MCOLN2 | ENSG00000153898.8 | 1.511E-6 | 0.01 | 9325 | gtex_brain_ba24 |
| rs11161500 | 1 | 85455825 | MCOLN2 | ENSG00000153898.8 | 1.45E-6 | 0.01 | 6971 | gtex_brain_ba24 |
| rs12130357 | 1 | 85457933 | MCOLN2 | ENSG00000153898.8 | 1.849E-7 | 0.01 | 4863 | gtex_brain_ba24 |
| rs1439130 | 1 | 85458118 | MCOLN2 | ENSG00000153898.8 | 1.52E-6 | 0.01 | 4678 | gtex_brain_ba24 |
| rs11161501 | 1 | 85458148 | MCOLN2 | ENSG00000153898.8 | 1.849E-7 | 0.01 | 4648 | gtex_brain_ba24 |
| rs56001083 | 1 | 85458562 | MCOLN2 | ENSG00000153898.8 | 1.223E-7 | 0.01 | 4234 | gtex_brain_ba24 |
| rs11161502 | 1 | 85458746 | MCOLN2 | ENSG00000153898.8 | 2.587E-6 | 0.01 | 4050 | gtex_brain_ba24 |
| rs7516329 | 1 | 85458862 | MCOLN2 | ENSG00000153898.8 | 1.849E-7 | 0.01 | 3934 | gtex_brain_ba24 |
| rs7553886 | 1 | 85459188 | MCOLN2 | ENSG00000153898.8 | 1.849E-7 | 0.01 | 3608 | gtex_brain_ba24 |
| rs7516610 | 1 | 85459198 | MCOLN2 | ENSG00000153898.8 | 1.849E-7 | 0.01 | 3598 | gtex_brain_ba24 |
| rs7516625 | 1 | 85459258 | MCOLN2 | ENSG00000153898.8 | 1.849E-7 | 0.01 | 3538 | gtex_brain_ba24 |
| rs66461729 | 1 | 85459730 | MCOLN2 | ENSG00000153898.8 | 2.228E-6 | 0.01 | 3066 | gtex_brain_ba24 |
| rs72720523 | 1 | 85459731 | MCOLN2 | ENSG00000153898.8 | 2.228E-6 | 0.01 | 3065 | gtex_brain_ba24 |
| rs34739781 | 1 | 85460037 | MCOLN2 | ENSG00000153898.8 | 9.89E-7 | 0.01 | 2759 | gtex_brain_ba24 |
| rs11804248 | 1 | 85460912 | MCOLN2 | ENSG00000153898.8 | 1.809E-7 | 0.01 | 1884 | gtex_brain_ba24 |
| rs11799517 | 1 | 85460922 | MCOLN2 | ENSG00000153898.8 | 1.279E-7 | 0.01 | 1874 | gtex_brain_ba24 |
| rs35333053 | 1 | 85460945 | MCOLN2 | ENSG00000153898.8 | 1.189E-7 | 0.01 | 1851 | gtex_brain_ba24 |
| rs10873676 | 1 | 85461030 | MCOLN2 | ENSG00000153898.8 | 2.639E-6 | 0.01 | 1766 | gtex_brain_ba24 |
| rs2389792 | 1 | 85461256 | MCOLN2 | ENSG00000153898.8 | 1.849E-7 | 0.01 | 1540 | gtex_brain_ba24 |
| rs11312420 | 1 | 85461269 | MCOLN2 | ENSG00000153898.8 | 1.993E-7 | 0.01 | 1527 | gtex_brain_ba24 |
| rs2389793 | 1 | 85461407 | MCOLN2 | ENSG00000153898.8 | 1.849E-7 | 0.01 | 1389 | gtex_brain_ba24 |
| rs11161503 | 1 | 85462582 | MCOLN2 | ENSG00000153898.8 | 1.849E-7 | 0.01 | 214 | gtex_brain_ba24 |
| rs11161504 | 1 | 85462652 | MCOLN2 | ENSG00000153898.8 | 1.849E-7 | 0.01 | 144 | gtex_brain_ba24 |
| rs11161505 | 1 | 85462665 | MCOLN2 | ENSG00000153898.8 | 1.849E-7 | 0.01 | 131 | gtex_brain_ba24 |
| rs12754569 | 1 | 85462971 | MCOLN2 | ENSG00000153898.8 | 1.862E-7 | 0.01 | -175 | gtex_brain_ba24 |
| rs7552445 | 1 | 85463108 | MCOLN2 | ENSG00000153898.8 | 1.7E-7 | 0.01 | -312 | gtex_brain_ba24 |
| rs7519134 | 1 | 85463208 | MCOLN2 | ENSG00000153898.8 | 8.485E-7 | 0.01 | -412 | gtex_brain_ba24 |
| rs7522851 | 1 | 85463738 | MCOLN2 | ENSG00000153898.8 | 2.622E-7 | 0.01 | -942 | gtex_brain_ba24 |
| rs3861690 | 1 | 85464509 | MCOLN2 | ENSG00000153898.8 | 2.622E-7 | 0.01 | -1713 | gtex_brain_ba24 |
| rs726708 | 1 | 85464843 | MCOLN2 | ENSG00000153898.8 | 2.622E-7 | 0.01 | -2047 | gtex_brain_ba24 |
| rs4123223 | 1 | 85465026 | MCOLN2 | ENSG00000153898.8 | 1.475E-6 | 0.01 | -2230 | gtex_brain_ba24 |
| rs10873679 | 1 | 85467045 | MCOLN2 | ENSG00000153898.8 | 2.074E-6 | 0.01 | -4249 | gtex_brain_ba24 |
| rs4907121 | 1 | 85474400 | MCOLN2 | ENSG00000153898.8 | 1.461E-6 | 0.01 | -11604 | gtex_brain_ba24 |
| rs11161508 | 1 | 85476636 | MCOLN2 | ENSG00000153898.8 | 1.425E-6 | 0.01 | -13840 | gtex_brain_ba24 |
| rs397765078 | 1 | 85538344 | MCOLN2 | ENSG00000153898.8 | 2.504E-6 | 0.01 | -75548 | gtex_brain_ba24 |
| rs677476 | 1 | 85418307 | MCOLN2 | ENSG00000153898.8 | 5.143E-9 | 0 | 44489 | gtex_brain_putamen_basal |
| rs632545 | 1 | 85422061 | MCOLN2 | ENSG00000153898.8 | 6.019E-9 | 0 | 40735 | gtex_brain_putamen_basal |
| rs12129308 | 1 | 85423720 | MCOLN2 | ENSG00000153898.8 | 1.251E-6 | 0 | 39076 | gtex_brain_putamen_basal |
| rs515303 | 1 | 85425706 | MCOLN2 | ENSG00000153898.8 | 6.018E-9 | 0 | 37090 | gtex_brain_putamen_basal |
| rs2031480 | 1 | 85426664 | MCOLN2 | ENSG00000153898.8 | 1.251E-6 | 0 | 36132 | gtex_brain_putamen_basal |
| rs4907015 | 1 | 85430710 | MCOLN2 | ENSG00000153898.8 | 1.243E-6 | 0 | 32086 | gtex_brain_putamen_basal |
| rs12146119 | 1 | 85434536 | MCOLN2 | ENSG00000153898.8 | 1.235E-6 | 0 | 28260 | gtex_brain_putamen_basal |
| rs625045 | 1 | 85434613 | MCOLN2 | ENSG00000153898.8 | 6.019E-9 | 0 | 28183 | gtex_brain_putamen_basal |
| rs11800103 | 1 | 85435975 | MCOLN2 | ENSG00000153898.8 | 1.233E-6 | 0 | 26821 | gtex_brain_putamen_basal |
| rs668860 | 1 | 85436462 | MCOLN2 | ENSG00000153898.8 | 6.019E-9 | 0 | 26334 | gtex_brain_putamen_basal |
| rs513430 | 1 | 85439059 | MCOLN2 | ENSG00000153898.8 | 6.529E-9 | 0 | 23737 | gtex_brain_putamen_basal |
| rs679167 | 1 | 85439147 | MCOLN2 | ENSG00000153898.8 | 6.318E-9 | 0 | 23649 | gtex_brain_putamen_basal |
| rs589653 | 1 | 85439304 | MCOLN2 | ENSG00000153898.8 | 6.019E-9 | 0 | 23492 | gtex_brain_putamen_basal |
| rs488710 | 1 | 85439454 | MCOLN2 | ENSG00000153898.8 | 6.32E-9 | 0 | 23342 | gtex_brain_putamen_basal |
| rs486751 | 1 | 85439669 | MCOLN2 | ENSG00000153898.8 | 6.32E-9 | 0 | 23127 | gtex_brain_putamen_basal |
| rs11799554 | 1 | 85440213 | MCOLN2 | ENSG00000153898.8 | 1.239E-6 | 0 | 22583 | gtex_brain_putamen_basal |
| rs531423 | 1 | 85440837 | MCOLN2 | ENSG00000153898.8 | 6.323E-9 | 0 | 21959 | gtex_brain_putamen_basal |
| rs530486 | 1 | 85440917 | MCOLN2 | ENSG00000153898.8 | 6.323E-9 | 0 | 21879 | gtex_brain_putamen_basal |
| rs600536 | 1 | 85441051 | MCOLN2 | ENSG00000153898.8 | 6.019E-9 | 0 | 21745 | gtex_brain_putamen_basal |
| rs12140467 | 1 | 85441702 | MCOLN2 | ENSG00000153898.8 | 1.238E-6 | 0 | 21094 | gtex_brain_putamen_basal |
| rs603746 | 1 | 85441785 | MCOLN2 | ENSG00000153898.8 | 1.292E-8 | 0 | 21011 | gtex_brain_putamen_basal |
| rs631267 | 1 | 85441929 | MCOLN2 | ENSG00000153898.8 | 6.029E-9 | 0 | 20867 | gtex_brain_putamen_basal |
| rs650529 | 1 | 85442380 | MCOLN2 | ENSG00000153898.8 | 3.939E-7 | 0 | 20416 | gtex_brain_putamen_basal |
| rs651916 | 1 | 85442647 | MCOLN2 | ENSG00000153898.8 | 6.019E-9 | 0 | 20149 | gtex_brain_putamen_basal |
| rs662948 | 1 | 85442806 | MCOLN2 | ENSG00000153898.8 | 6.326E-9 | 0 | 19990 | gtex_brain_putamen_basal |
| rs495786 | 1 | 85443420 | MCOLN2 | ENSG00000153898.8 | 7.268E-9 | 0 | 19376 | gtex_brain_putamen_basal |
| rs648660 | 1 | 85443519 | MCOLN2 | ENSG00000153898.8 | 6.328E-9 | 0 | 19277 | gtex_brain_putamen_basal |
| rs499539 | 1 | 85443830 | MCOLN2 | ENSG00000153898.8 | 6.328E-9 | 0 | 18966 | gtex_brain_putamen_basal |
| rs201617492 | 1 | 85444097 | MCOLN2 | ENSG00000153898.8 | 9.019E-9 | 0 | 18699 | gtex_brain_putamen_basal |
| rs2486755 | 1 | 85444245 | MCOLN2 | ENSG00000153898.8 | 6.328E-9 | 0 | 18551 | gtex_brain_putamen_basal |
| rs10873669 | 1 | 85444401 | MCOLN2 | ENSG00000153898.8 | 6.331E-9 | 0 | 18395 | gtex_brain_putamen_basal |
| rs11485283 | 1 | 85444713 | MCOLN2 | ENSG00000153898.8 | 3.797E-9 | 0 | 18083 | gtex_brain_putamen_basal |
| rs11485284 | 1 | 85444746 | MCOLN2 | ENSG00000153898.8 | 6.331E-9 | 0 | 18050 | gtex_brain_putamen_basal |
| rs12091131 | 1 | 85444929 | MCOLN2 | ENSG00000153898.8 | 6.331E-9 | 0 | 17867 | gtex_brain_putamen_basal |
| rs11161495 | 1 | 85445031 | MCOLN2 | ENSG00000153898.8 | 6.331E-9 | 0 | 17765 | gtex_brain_putamen_basal |
| rs10873670 | 1 | 85445384 | MCOLN2 | ENSG00000153898.8 | 6.331E-9 | 0 | 17412 | gtex_brain_putamen_basal |
| rs11161496 | 1 | 85445746 | MCOLN2 | ENSG00000153898.8 | 6.595E-9 | 0 | 17050 | gtex_brain_putamen_basal |
| rs10782534 | 1 | 85446122 | MCOLN2 | ENSG00000153898.8 | 6.069E-9 | 0 | 16674 | gtex_brain_putamen_basal |
| rs11161497 | 1 | 85446687 | MCOLN2 | ENSG00000153898.8 | 4.633E-8 | 0 | 16109 | gtex_brain_putamen_basal |
| rs397863428 | 1 | 85447634 | MCOLN2 | ENSG00000153898.8 | 1.833E-10 | 0 | 15162 | gtex_brain_putamen_basal |
| rs4907017 | 1 | 85447659 | MCOLN2 | ENSG00000153898.8 | 1.838E-10 | 0 | 15137 | gtex_brain_putamen_basal |
| rs4907018 | 1 | 85447663 | MCOLN2 | ENSG00000153898.8 | 1.905E-10 | 0 | 15133 | gtex_brain_putamen_basal |
| rs67794450 | 1 | 85447771 | MCOLN2 | ENSG00000153898.8 | 8.138E-9 | 0 | 15025 | gtex_brain_putamen_basal |
| rs12751315 | 1 | 85448349 | MCOLN2 | ENSG00000153898.8 | 1.836E-10 | 0 | 14447 | gtex_brain_putamen_basal |
| rs12730688 | 1 | 85448351 | MCOLN2 | ENSG00000153898.8 | 1.836E-10 | 0 | 14445 | gtex_brain_putamen_basal |
| rs537638394 | 1 | 85448947 | MCOLN2 | ENSG00000153898.8 | 3.947E-10 | 0 | 13849 | gtex_brain_putamen_basal |
| rs6685363 | 1 | 85449080 | MCOLN2 | ENSG00000153898.8 | 1.831E-10 | 0 | 13716 | gtex_brain_putamen_basal |
| rs6576735 | 1 | 85449219 | MCOLN2 | ENSG00000153898.8 | 1.831E-10 | 0 | 13577 | gtex_brain_putamen_basal |
| rs6576736 | 1 | 85449251 | MCOLN2 | ENSG00000153898.8 | 1.831E-10 | 0 | 13545 | gtex_brain_putamen_basal |
| rs7549346 | 1 | 85449649 | MCOLN2 | ENSG00000153898.8 | 1.826E-10 | 0 | 13147 | gtex_brain_putamen_basal |
| rs7541684 | 1 | 85449697 | MCOLN2 | ENSG00000153898.8 | 1.829E-10 | 0 | 13099 | gtex_brain_putamen_basal |
| rs11161498 | 1 | 85450069 | MCOLN2 | ENSG00000153898.8 | 2.739E-10 | 0 | 12727 | gtex_brain_putamen_basal |
| rs398102971 | 1 | 85450079 | MCOLN2 | ENSG00000153898.8 | 2.252E-10 | 0 | 12717 | gtex_brain_putamen_basal |
| rs11161499 | 1 | 85450320 | MCOLN2 | ENSG00000153898.8 | 1.824E-10 | 0 | 12476 | gtex_brain_putamen_basal |
| rs6691674 | 1 | 85450627 | MCOLN2 | ENSG00000153898.8 | 1.821E-10 | 0 | 12169 | gtex_brain_putamen_basal |
| rs10873672 | 1 | 85450726 | MCOLN2 | ENSG00000153898.8 | 6.019E-9 | 0 | 12070 | gtex_brain_putamen_basal |
| rs6691970 | 1 | 85450920 | MCOLN2 | ENSG00000153898.8 | 1.821E-10 | 0 | 11876 | gtex_brain_putamen_basal |
| rs6677091 | 1 | 85451087 | MCOLN2 | ENSG00000153898.8 | 6.214E-11 | 0 | 11709 | gtex_brain_putamen_basal |
| rs6700622 | 1 | 85451143 | MCOLN2 | ENSG00000153898.8 | 1.821E-10 | 0 | 11653 | gtex_brain_putamen_basal |
| rs67529032 | 1 | 85453471 | MCOLN2 | ENSG00000153898.8 | 1.083E-6 | 0 | 9325 | gtex_brain_putamen_basal |
| rs4907118 | 1 | 85455676 | MCOLN2 | ENSG00000153898.8 | 6.602E-9 | 0 | 7120 | gtex_brain_putamen_basal |
| rs12130357 | 1 | 85457933 | MCOLN2 | ENSG00000153898.8 | 3.794E-9 | 0 | 4863 | gtex_brain_putamen_basal |
| rs1439130 | 1 | 85458118 | MCOLN2 | ENSG00000153898.8 | 4.636E-8 | 0 | 4678 | gtex_brain_putamen_basal |
| rs11161501 | 1 | 85458148 | MCOLN2 | ENSG00000153898.8 | 3.794E-9 | 0 | 4648 | gtex_brain_putamen_basal |
| rs56001083 | 1 | 85458562 | MCOLN2 | ENSG00000153898.8 | 5.141E-9 | 0 | 4234 | gtex_brain_putamen_basal |
| rs11161502 | 1 | 85458746 | MCOLN2 | ENSG00000153898.8 | 7.5E-9 | 0 | 4050 | gtex_brain_putamen_basal |
| rs7516329 | 1 | 85458862 | MCOLN2 | ENSG00000153898.8 | 3.794E-9 | 0 | 3934 | gtex_brain_putamen_basal |
| rs7553886 | 1 | 85459188 | MCOLN2 | ENSG00000153898.8 | 3.794E-9 | 0 | 3608 | gtex_brain_putamen_basal |
| rs7516610 | 1 | 85459198 | MCOLN2 | ENSG00000153898.8 | 9.443E-10 | 0 | 3598 | gtex_brain_putamen_basal |
| rs7516625 | 1 | 85459258 | MCOLN2 | ENSG00000153898.8 | 3.794E-9 | 0 | 3538 | gtex_brain_putamen_basal |
| rs66461729 | 1 | 85459730 | MCOLN2 | ENSG00000153898.8 | 1.01E-8 | 0 | 3066 | gtex_brain_putamen_basal |
| rs72720523 | 1 | 85459731 | MCOLN2 | ENSG00000153898.8 | 1.002E-8 | 0 | 3065 | gtex_brain_putamen_basal |
| rs34739781 | 1 | 85460037 | MCOLN2 | ENSG00000153898.8 | 1.816E-8 | 0 | 2759 | gtex_brain_putamen_basal |
| rs11804248 | 1 | 85460912 | MCOLN2 | ENSG00000153898.8 | 8.475E-9 | 0 | 1884 | gtex_brain_putamen_basal |
| rs11799517 | 1 | 85460922 | MCOLN2 | ENSG00000153898.8 | 4.609E-9 | 0 | 1874 | gtex_brain_putamen_basal |
| rs35333053 | 1 | 85460945 | MCOLN2 | ENSG00000153898.8 | 3.816E-9 | 0 | 1851 | gtex_brain_putamen_basal |
| rs10873676 | 1 | 85461030 | MCOLN2 | ENSG00000153898.8 | 7.755E-9 | 0 | 1766 | gtex_brain_putamen_basal |
| rs2389792 | 1 | 85461256 | MCOLN2 | ENSG00000153898.8 | 3.794E-9 | 0 | 1540 | gtex_brain_putamen_basal |
| rs11312420 | 1 | 85461269 | MCOLN2 | ENSG00000153898.8 | 3.941E-9 | 0 | 1527 | gtex_brain_putamen_basal |
| rs2389793 | 1 | 85461407 | MCOLN2 | ENSG00000153898.8 | 3.794E-9 | 0 | 1389 | gtex_brain_putamen_basal |
| rs10873677 | 1 | 85461946 | MCOLN2 | ENSG00000153898.8 | 6.576E-9 | 0 | 850 | gtex_brain_putamen_basal |
| rs11161503 | 1 | 85462582 | MCOLN2 | ENSG00000153898.8 | 3.794E-9 | 0 | 214 | gtex_brain_putamen_basal |
| rs11161504 | 1 | 85462652 | MCOLN2 | ENSG00000153898.8 | 3.794E-9 | 0 | 144 | gtex_brain_putamen_basal |
| rs11161505 | 1 | 85462665 | MCOLN2 | ENSG00000153898.8 | 3.794E-9 | 0 | 131 | gtex_brain_putamen_basal |
| rs1837328 | 1 | 85462909 | MCOLN2 | ENSG00000153898.8 | 2.9E-7 | 0 | -113 | gtex_brain_putamen_basal |
| rs12754569 | 1 | 85462971 | MCOLN2 | ENSG00000153898.8 | 2.348E-9 | 0 | -175 | gtex_brain_putamen_basal |
| rs7552445 | 1 | 85463108 | MCOLN2 | ENSG00000153898.8 | 4.086E-9 | 0 | -312 | gtex_brain_putamen_basal |
| rs7519134 | 1 | 85463208 | MCOLN2 | ENSG00000153898.8 | 6.4E-9 | 0 | -412 | gtex_brain_putamen_basal |
| rs7522851 | 1 | 85463738 | MCOLN2 | ENSG00000153898.8 | 6.748E-9 | 0 | -942 | gtex_brain_putamen_basal |
| rs3861690 | 1 | 85464509 | MCOLN2 | ENSG00000153898.8 | 6.974E-9 | 0 | -1713 | gtex_brain_putamen_basal |
| rs726708 | 1 | 85464843 | MCOLN2 | ENSG00000153898.8 | 6.97E-9 | 0 | -2047 | gtex_brain_putamen_basal |
| rs3895846 | 1 | 85465175 | MCOLN2 | ENSG00000153898.8 | 6.019E-9 | 0 | -2379 | gtex_brain_putamen_basal |
| rs3850430 | 1 | 85465422 | MCOLN2 | ENSG00000153898.8 | 1.502E-8 | 0 | -2626 | gtex_brain_putamen_basal |
| rs3904965 | 1 | 85465793 | MCOLN2 | ENSG00000153898.8 | 1.282E-8 | 0 | -2997 | gtex_brain_putamen_basal |
| rs10873678 | 1 | 85466995 | MCOLN2 | ENSG00000153898.8 | 6.019E-9 | 0 | -4199 | gtex_brain_putamen_basal |
| rs10873679 | 1 | 85467045 | MCOLN2 | ENSG00000153898.8 | 6.341E-9 | 0 | -4249 | gtex_brain_putamen_basal |
| rs6576739 | 1 | 85468319 | MCOLN2 | ENSG00000153898.8 | 4.198E-6 | 0 | -5523 | gtex_brain_putamen_basal |
| rs55997821 | 1 | 85468807 | MCOLN2 | ENSG00000153898.8 | 4.098E-6 | 0 | -6011 | gtex_brain_putamen_basal |
| rs34099687 | 1 | 85470042 | MCOLN2 | ENSG00000153898.8 | 4.648E-8 | 0 | -7246 | gtex_brain_putamen_basal |
| rs4907121 | 1 | 85474400 | MCOLN2 | ENSG00000153898.8 | 4.529E-8 | 0 | -11604 | gtex_brain_putamen_basal |
| rs11161507 | 1 | 85474933 | MCOLN2 | ENSG00000153898.8 | 3.246E-8 | 0 | -12137 | gtex_brain_putamen_basal |
| rs12127296 | 1 | 85476229 | MCOLN2 | ENSG00000153898.8 | 2.944E-6 | 0 | -13433 | gtex_brain_putamen_basal |
| rs397863751 | 1 | 85476357 | MCOLN2 | ENSG00000153898.8 | 2.93E-6 | 0 | -13561 | gtex_brain_putamen_basal |
| rs11161508 | 1 | 85476636 | MCOLN2 | ENSG00000153898.8 | 4.165E-8 | 0 | -13840 | gtex_brain_putamen_basal |
| rs6701779 | 1 | 85479196 | MCOLN2 | ENSG00000153898.8 | 3.246E-8 | 0 | -16400 | gtex_brain_putamen_basal |
| rs35569266 | 1 | 85479769 | MCOLN2 | ENSG00000153898.8 | 2.587E-6 | 0 | -16973 | gtex_brain_putamen_basal |
| rs66631937 | 1 | 85480283 | MCOLN2 | ENSG00000153898.8 | 2.517E-6 | 0 | -17487 | gtex_brain_putamen_basal |
| rs12730329 | 1 | 85481700 | MCOLN2 | ENSG00000153898.8 | 2.432E-6 | 0 | -18904 | gtex_brain_putamen_basal |
| rs10782536 | 1 | 85484276 | MCOLN2 | ENSG00000153898.8 | 6.019E-9 | 0 | -21480 | gtex_brain_putamen_basal |
| rs35656631 | 1 | 85487409 | MCOLN2 | ENSG00000153898.8 | 1.973E-6 | 0 | -24613 | gtex_brain_putamen_basal |
| rs12138711 | 1 | 85492596 | MCOLN2 | ENSG00000153898.8 | 6.019E-9 | 0 | -29800 | gtex_brain_putamen_basal |
| rs34482655 | 1 | 85494037 | MCOLN2 | ENSG00000153898.8 | 2.254E-6 | 0 | -31241 | gtex_brain_putamen_basal |
| rs72720544 | 1 | 85497262 | MCOLN2 | ENSG00000153898.8 | 1.687E-6 | 0 | -34466 | gtex_brain_putamen_basal |
| rs10873682 | 1 | 85497812 | MCOLN2 | ENSG00000153898.8 | 1.687E-8 | 0 | -35016 | gtex_brain_putamen_basal |
| rs11161513 | 1 | 85501041 | MCOLN2 | ENSG00000153898.8 | 6.019E-9 | 0 | -38245 | gtex_brain_putamen_basal |
| rs4907123 | 1 | 85501937 | MCOLN2 | ENSG00000153898.8 | 6.5E-9 | 0 | -39141 | gtex_brain_putamen_basal |
| rs11161514 | 1 | 85505697 | MCOLN2 | ENSG00000153898.8 | 5.992E-9 | 0 | -42901 | gtex_brain_putamen_basal |
| rs4907125 | 1 | 85508601 | MCOLN2 | ENSG00000153898.8 | 4.612E-9 | 0 | -45805 | gtex_brain_putamen_basal |
| rs10873683 | 1 | 85509283 | MCOLN2 | ENSG00000153898.8 | 5.977E-9 | 0 | -46487 | gtex_brain_putamen_basal |
| rs34407588 | 1 | 85514282 | MCOLN2 | ENSG00000153898.8 | 3.011E-6 | 0 | -51486 | gtex_brain_putamen_basal |
| rs6674050 | 1 | 85516174 | MCOLN2 | ENSG00000153898.8 | 2.416E-6 | 0 | -53378 | gtex_brain_putamen_basal |
| rs12755226 | 1 | 85519418 | MCOLN2 | ENSG00000153898.8 | 2.677E-6 | 0 | -56622 | gtex_brain_putamen_basal |
| rs397780520 | 1 | 85521142 | MCOLN2 | ENSG00000153898.8 | 8.956E-9 | 0 | -58346 | gtex_brain_putamen_basal |
| rs35481466 | 1 | 85522749 | MCOLN2 | ENSG00000153898.8 | 4.815E-8 | 0 | -59953 | gtex_brain_putamen_basal |
| rs4907019 | 1 | 85522897 | MCOLN2 | ENSG00000153898.8 | 1.936E-6 | 0 | -60101 | gtex_brain_putamen_basal |
| rs12022421 | 1 | 85523398 | MCOLN2 | ENSG00000153898.8 | 8.098E-9 | 0 | -60602 | gtex_brain_putamen_basal |
| rs12034421 | 1 | 85528006 | MCOLN2 | ENSG00000153898.8 | 1.487E-7 | 0 | -65210 | gtex_brain_putamen_basal |
| rs12755558 | 1 | 85528558 | MCOLN2 | ENSG00000153898.8 | 1.752E-6 | 0 | -65762 | gtex_brain_putamen_basal |
| rs12062414 | 1 | 85529097 | MCOLN2 | ENSG00000153898.8 | 5.975E-8 | 0 | -66301 | gtex_brain_putamen_basal |
| rs61769367 | 1 | 85538186 | MCOLN2 | ENSG00000153898.8 | 1.608E-6 | 0 | -75390 | gtex_brain_putamen_basal |
| rs397765078 | 1 | 85538344 | MCOLN2 | ENSG00000153898.8 | 7.006E-7 | 0 | -75548 | gtex_brain_putamen_basal |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
No co-expressed genes in brain regions
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| TAKEDA TARGETS OF NUP98 HOXA9 FUSION 10D UP | 194 | 122 | All SZGR 2.0 genes in this pathway |
| TAKEDA TARGETS OF NUP98 HOXA9 FUSION 16D UP | 175 | 108 | All SZGR 2.0 genes in this pathway |
| SABATES COLORECTAL ADENOMA DN | 291 | 176 | All SZGR 2.0 genes in this pathway |
| MARKEY RB1 ACUTE LOF UP | 215 | 137 | All SZGR 2.0 genes in this pathway |
| PEREZ TP53 TARGETS | 1174 | 695 | All SZGR 2.0 genes in this pathway |
| GOLDRATH IMMUNE MEMORY | 65 | 42 | All SZGR 2.0 genes in this pathway |
| MATSUDA NATURAL KILLER DIFFERENTIATION | 475 | 313 | All SZGR 2.0 genes in this pathway |
| KUMAR TARGETS OF MLL AF9 FUSION | 405 | 264 | All SZGR 2.0 genes in this pathway |
| BILD MYC ONCOGENIC SIGNATURE | 206 | 117 | All SZGR 2.0 genes in this pathway |
| FOSTER TOLERANT MACROPHAGE UP | 156 | 92 | All SZGR 2.0 genes in this pathway |
| CHEN METABOLIC SYNDROM NETWORK | 1210 | 725 | All SZGR 2.0 genes in this pathway |
| ELLWOOD MYC TARGETS DN | 40 | 27 | All SZGR 2.0 genes in this pathway |
| MEISSNER NPC HCP WITH H3 UNMETHYLATED | 536 | 296 | All SZGR 2.0 genes in this pathway |
| MEISSNER BRAIN HCP WITH H3K4ME2 AND H3K27ME3 | 59 | 35 | All SZGR 2.0 genes in this pathway |
| WONG ADULT TISSUE STEM MODULE | 721 | 492 | All SZGR 2.0 genes in this pathway |
| WANG RESPONSE TO GSK3 INHIBITOR SB216763 UP | 397 | 206 | All SZGR 2.0 genes in this pathway |
| BRUINS UVC RESPONSE VIA TP53 GROUP A | 898 | 516 | All SZGR 2.0 genes in this pathway |