Summary ?
GeneID2636
SymbolGBX1
SynonymsHuh-17
Descriptiongastrulation brain homeobox 1
ReferenceMIM:603354|HGNC:HGNC:4185|Ensembl:ENSG00000164900|Vega:OTTHUMG00000158751
Gene typeprotein-coding
Map location7q36.1
Pascal p-value0.028
Fetal beta-0.865
DMG1 (# studies)

Gene in Data Sources
Gene set name Method of gene setDescriptionInfo
DMG:Wockner_2014Genome-wide DNA methylation analysisThis dataset includes 4641 differentially methylated probes corresponding to 2929 unique genes between schizophrenia patients (n=24) and controls (n=24). 1
GO_AnnotationMapping neuro-related keywords to Gene Ontology annotationsHits with neuro-related keywords: 6 

Section I. Genetics and epigenetics annotation

@Differentially methylated gene

ProbeChromosomePositionNearest geneP (dis)Beta (dis)FDR (dis)Study
cg006438627150865186GBX13.001E-4-0.2410.04DMG:Wockner_2014


Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression during devlopment (BrainCloud)

Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

No co-expressed genes in brain regions


Section III. Gene Ontology annotation

Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0003700transcription factor activityIEA-
GO:0003700transcription factor activityNAS-
GO:0043565sequence-specific DNA bindingIEA-
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0007411axon guidanceIEAaxon (GO term level: 13)-
GO:0030902hindbrain developmentIEABrain (GO term level: 8)-
GO:0021555midbrain-hindbrain boundary morphogenesisIEABrain (GO term level: 11)-
GO:0021549cerebellum developmentIEABrain (GO term level: 10)-
GO:0021930granule cell precursor proliferationIEAneuron, glutamate (GO term level: 11)-
GO:0048483autonomic nervous system developmentIEAneuron (GO term level: 6)-
GO:0001755neural crest cell migrationIEA-
GO:0001569patterning of blood vesselsIEA-
GO:0006355regulation of transcription, DNA-dependentIEA-
GO:0006355regulation of transcription, DNA-dependentNAS-
GO:0008283cell proliferationIEA-
GO:0042472inner ear morphogenesisIEA-
GO:0021568rhombomere 2 developmentIEA-
GO:0035239tube morphogenesisIEA-
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0000228nuclear chromosomeNAS-
GO:0005634nucleusIEA-

Section V. Pathway annotation

Pathway namePathway size# SZGR 2.0 genes in pathwayInfo
WEST ADRENOCORTICAL TUMOR DN 546362All SZGR 2.0 genes in this pathway
MEISSNER BRAIN HCP WITH H3K27ME3 269159All SZGR 2.0 genes in this pathway
MEISSNER NPC HCP WITH H3K4ME2 AND H3K27ME3 349234All SZGR 2.0 genes in this pathway
MIKKELSEN MCV6 HCP WITH H3K27ME3 435318All SZGR 2.0 genes in this pathway