Summary ?
GeneID27128
SymbolCYTH4
SynonymsCYT4|DJ63G5.1|PSCD4
Descriptioncytohesin 4
ReferenceMIM:606514|HGNC:HGNC:9505|Ensembl:ENSG00000100055|HPRD:07354|Vega:OTTHUMG00000150562
Gene typeprotein-coding
Map location22q12.3-q13.1
Pascal p-value0.816
Sherlock p-value0.47
Fetal beta-1.12
eGeneMyers' cis & trans

Gene in Data Sources
Gene set name Method of gene setDescriptionInfo
CV:GWASdbGenome-wide Association StudiesGWASdb records for schizophrenia
CV:PGCnpGenome-wide Association StudyGWAS

Section I. Genetics and epigenetics annotation

@eQTL annotation

SNP IDChromosomePositioneGeneGene Entrez IDpvalueqvalueTSS distanceeQTL type
rs174834510CYTH4271280.16trans
rs12564871chr1163771926CYTH4271280.07trans
rs6430976chr2128822384CYTH4271281.835E-6trans
rs11684252chr2128829365CYTH4271286.66E-4trans
rs16850942chr3161898689CYTH4271280.15trans
rs17000340chr476135365CYTH4271280.03trans
rs17036588chr4158561487CYTH4271286.551E-6trans
rs7445750chr5104331223CYTH4271280.01trans
rs544338chr5104625129CYTH4271280.03trans
rs10080391chr64912440CYTH4271280.06trans
rs687029chr742856861CYTH4271280.19trans
rs16877878chr831176024CYTH4271280.18trans
rs17722245chr91070774CYTH4271280.13trans
rs17775722chr926199256CYTH4271280.09trans
rs17618655chr973983104CYTH4271283.449E-5trans
rs11255704chr108501820CYTH4271280.04trans
rs4934985chr1033905260CYTH4271280.08trans
rs7119964chr1110425509CYTH4271280.01trans
rs509027chr11109200795CYTH4271280.02trans
rs10876176chr1251811831CYTH4271280.1trans
rs1359205chr1343722847CYTH4271280.17trans
rs17089379chr1364433308CYTH4271280.01trans
rs17119861chr1448679838CYTH4271280.18trans
rs8072151chr1750228268CYTH4271283.172E-7trans
rs16963567chr1930455279CYTH4271280.01trans
rs2179733chr2053876875CYTH4271280.09trans
rs1344430chr2060099390CYTH4271281.555E-6trans
rs6121675chr2060116713CYTH4271280.12trans

Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression during devlopment (BrainCloud)

Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

No co-expressed genes in brain regions


Section V. Pathway annotation

Pathway namePathway size# SZGR 2.0 genes in pathwayInfo
BIOCARTA ARAP PATHWAY 1813All SZGR 2.0 genes in this pathway
PARENT MTOR SIGNALING UP 567375All SZGR 2.0 genes in this pathway
ZHOU INFLAMMATORY RESPONSE LIVE DN 384220All SZGR 2.0 genes in this pathway
HOEBEKE LYMPHOID STEM CELL UP 9564All SZGR 2.0 genes in this pathway
MULLIGHAN MLL SIGNATURE 1 UP 380236All SZGR 2.0 genes in this pathway
MULLIGHAN MLL SIGNATURE 2 UP 418263All SZGR 2.0 genes in this pathway
ZHOU INFLAMMATORY RESPONSE FIMA DN 284156All SZGR 2.0 genes in this pathway
LINDGREN BLADDER CANCER CLUSTER 2B 392251All SZGR 2.0 genes in this pathway
SHEN SMARCA2 TARGETS DN 357212All SZGR 2.0 genes in this pathway
WONG IFNA2 RESISTANCE DN 3420All SZGR 2.0 genes in this pathway
BOYLAN MULTIPLE MYELOMA D DN 7834All SZGR 2.0 genes in this pathway
CHEN METABOLIC SYNDROM NETWORK 1210725All SZGR 2.0 genes in this pathway
BOYLAN MULTIPLE MYELOMA PCA3 DN 6938All SZGR 2.0 genes in this pathway
MARTENS BOUND BY PML RARA FUSION 456287All SZGR 2.0 genes in this pathway
VERHAAK GLIOBLASTOMA MESENCHYMAL 216130All SZGR 2.0 genes in this pathway
CHYLA CBFA2T3 TARGETS UP 387225All SZGR 2.0 genes in this pathway