Gene Page: CSDC2
Summary ?
| GeneID | 27254 |
| Symbol | CSDC2 |
| Synonyms | PIPPIN|dJ347H13.2 |
| Description | cold shock domain containing C2 |
| Reference | HGNC:HGNC:30359|Ensembl:ENSG00000172346|HPRD:15140|Vega:OTTHUMG00000150967 |
| Gene type | protein-coding |
| Map location | 22q13.2 |
| Pascal p-value | 0.038 |
| eGene | Anterior cingulate cortex BA24 Caudate basal ganglia Cerebellum Cortex Frontal Cortex BA9 Nucleus accumbens basal ganglia Putamen basal ganglia |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:PGCnp | Genome-wide Association Study | GWAS |
Section I. Genetics and epigenetics annotation
eQTL annotation
| SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
|---|---|---|---|---|---|---|---|---|
| rs2413646 | 22 | 41906325 | CSDC2 | ENSG00000172346.10 | 3.917E-6 | 0 | -50442 | gtex_brain_ba24 |
| rs2413647 | 22 | 41907148 | CSDC2 | ENSG00000172346.10 | 3.642E-6 | 0 | -49619 | gtex_brain_ba24 |
| rs9611602 | 22 | 41908405 | CSDC2 | ENSG00000172346.10 | 3.335E-6 | 0 | -48362 | gtex_brain_ba24 |
| rs1569516 | 22 | 41910244 | CSDC2 | ENSG00000172346.10 | 2.924E-6 | 0 | -46523 | gtex_brain_ba24 |
| rs9611603 | 22 | 41912750 | CSDC2 | ENSG00000172346.10 | 2.564E-6 | 0 | -44017 | gtex_brain_ba24 |
| rs11090049 | 22 | 41915329 | CSDC2 | ENSG00000172346.10 | 2.442E-6 | 0 | -41438 | gtex_brain_ba24 |
| . | 22 | 41915812 | CSDC2 | ENSG00000172346.10 | 3.219E-6 | 0 | -40955 | gtex_brain_ba24 |
| rs9611604 | 22 | 41916001 | CSDC2 | ENSG00000172346.10 | 2.442E-6 | 0 | -40766 | gtex_brain_ba24 |
| rs12484694 | 22 | 41919330 | CSDC2 | ENSG00000172346.10 | 2.442E-6 | 0 | -37437 | gtex_brain_ba24 |
| rs73178621 | 22 | 41921665 | CSDC2 | ENSG00000172346.10 | 2.436E-6 | 0 | -35102 | gtex_brain_ba24 |
| rs71772435 | 22 | 41922186 | CSDC2 | ENSG00000172346.10 | 2.41E-6 | 0 | -34581 | gtex_brain_ba24 |
| rs9611607 | 22 | 41932323 | CSDC2 | ENSG00000172346.10 | 3.251E-6 | 0 | -24444 | gtex_brain_ba24 |
| rs28530678 | 22 | 41934961 | CSDC2 | ENSG00000172346.10 | 2.442E-6 | 0 | -21806 | gtex_brain_ba24 |
| rs73178638 | 22 | 41942904 | CSDC2 | ENSG00000172346.10 | 2.446E-6 | 0 | -13863 | gtex_brain_ba24 |
| rs113546599 | 22 | 41950482 | CSDC2 | ENSG00000172346.10 | 2.405E-6 | 0 | -6285 | gtex_brain_ba24 |
| rs4822038 | 22 | 41958495 | CSDC2 | ENSG00000172346.10 | 2.187E-6 | 0 | 1728 | gtex_brain_ba24 |
| rs4822039 | 22 | 41961134 | CSDC2 | ENSG00000172346.10 | 7.016E-7 | 0 | 4367 | gtex_brain_ba24 |
| rs9611612 | 22 | 41961189 | CSDC2 | ENSG00000172346.10 | 4.83E-6 | 0 | 4422 | gtex_brain_ba24 |
| rs9611613 | 22 | 41961831 | CSDC2 | ENSG00000172346.10 | 4.839E-6 | 0 | 5064 | gtex_brain_ba24 |
| rs12483860 | 22 | 41961916 | CSDC2 | ENSG00000172346.10 | 4.839E-6 | 0 | 5149 | gtex_brain_ba24 |
| rs12484254 | 22 | 41962003 | CSDC2 | ENSG00000172346.10 | 4.839E-6 | 0 | 5236 | gtex_brain_ba24 |
| rs6002402 | 22 | 41962292 | CSDC2 | ENSG00000172346.10 | 7.102E-7 | 0 | 5525 | gtex_brain_ba24 |
| rs9611615 | 22 | 41962793 | CSDC2 | ENSG00000172346.10 | 3.354E-6 | 0 | 6026 | gtex_brain_ba24 |
| rs73178647 | 22 | 41964168 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 7401 | gtex_brain_ba24 |
| rs7290990 | 22 | 41964357 | CSDC2 | ENSG00000172346.10 | 4.839E-6 | 0 | 7590 | gtex_brain_ba24 |
| rs7290991 | 22 | 41964361 | CSDC2 | ENSG00000172346.10 | 4.839E-6 | 0 | 7594 | gtex_brain_ba24 |
| rs6002406 | 22 | 41965237 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 8470 | gtex_brain_ba24 |
| rs5996037 | 22 | 41965292 | CSDC2 | ENSG00000172346.10 | 4.839E-6 | 0 | 8525 | gtex_brain_ba24 |
| rs5996038 | 22 | 41965300 | CSDC2 | ENSG00000172346.10 | 4.839E-6 | 0 | 8533 | gtex_brain_ba24 |
| rs6002408 | 22 | 41967870 | CSDC2 | ENSG00000172346.10 | 4.839E-6 | 0 | 11103 | gtex_brain_ba24 |
| rs201951750 | 22 | 41969373 | CSDC2 | ENSG00000172346.10 | 3.681E-6 | 0 | 12606 | gtex_brain_ba24 |
| rs1006407 | 22 | 41972032 | CSDC2 | ENSG00000172346.10 | 2.924E-7 | 0 | 15265 | gtex_brain_ba24 |
| rs4822044 | 22 | 41979668 | CSDC2 | ENSG00000172346.10 | 8.451E-7 | 0 | 22901 | gtex_brain_ba24 |
| rs2076200 | 22 | 41985956 | CSDC2 | ENSG00000172346.10 | 7.13E-7 | 0 | 29189 | gtex_brain_ba24 |
| rs4822045 | 22 | 41985958 | CSDC2 | ENSG00000172346.10 | 7.13E-7 | 0 | 29191 | gtex_brain_ba24 |
| rs9611619 | 22 | 41986714 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 29947 | gtex_brain_ba24 |
| rs4822046 | 22 | 41987543 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 30776 | gtex_brain_ba24 |
| rs4822048 | 22 | 41988225 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 31458 | gtex_brain_ba24 |
| rs4822049 | 22 | 41993496 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 36729 | gtex_brain_ba24 |
| rs148894219 | 22 | 41996131 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 39364 | gtex_brain_ba24 |
| rs145063118 | 22 | 41997585 | CSDC2 | ENSG00000172346.10 | 6.724E-7 | 0 | 40818 | gtex_brain_ba24 |
| rs132761 | 22 | 42004371 | CSDC2 | ENSG00000172346.10 | 7.782E-7 | 0 | 47604 | gtex_brain_ba24 |
| rs132765 | 22 | 42008068 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 51301 | gtex_brain_ba24 |
| rs132767 | 22 | 42009520 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 52753 | gtex_brain_ba24 |
| rs112898513 | 22 | 42010901 | CSDC2 | ENSG00000172346.10 | 2.74E-6 | 0 | 54134 | gtex_brain_ba24 |
| rs132768 | 22 | 42013523 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 56756 | gtex_brain_ba24 |
| rs132770 | 22 | 42017264 | CSDC2 | ENSG00000172346.10 | 7.137E-7 | 0 | 60497 | gtex_brain_ba24 |
| rs5758397 | 22 | 42019251 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 62484 | gtex_brain_ba24 |
| rs13055759 | 22 | 42022035 | CSDC2 | ENSG00000172346.10 | 4.568E-7 | 0 | 65268 | gtex_brain_ba24 |
| rs132771 | 22 | 42025350 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 68583 | gtex_brain_ba24 |
| rs132773 | 22 | 42031768 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 75001 | gtex_brain_ba24 |
| rs132776 | 22 | 42036374 | CSDC2 | ENSG00000172346.10 | 3.218E-6 | 0 | 79607 | gtex_brain_ba24 |
| rs132779 | 22 | 42038640 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 81873 | gtex_brain_ba24 |
| rs9611636 | 22 | 42041310 | CSDC2 | ENSG00000172346.10 | 9.721E-8 | 0 | 84543 | gtex_brain_ba24 |
| rs147146993 | 22 | 42045008 | CSDC2 | ENSG00000172346.10 | 5.942E-7 | 0 | 88241 | gtex_brain_ba24 |
| . | 22 | 42045009 | CSDC2 | ENSG00000172346.10 | 6.93E-7 | 0 | 88242 | gtex_brain_ba24 |
| rs132781 | 22 | 42046122 | CSDC2 | ENSG00000172346.10 | 1.515E-6 | 0 | 89355 | gtex_brain_ba24 |
| . | 22 | 42048702 | CSDC2 | ENSG00000172346.10 | 3.813E-6 | 0 | 91935 | gtex_brain_ba24 |
| rs5751135 | 22 | 42048866 | CSDC2 | ENSG00000172346.10 | 8.583E-7 | 0 | 92099 | gtex_brain_ba24 |
| . | 22 | 42051719 | CSDC2 | ENSG00000172346.10 | 3.737E-6 | 0 | 94952 | gtex_brain_ba24 |
| rs132784 | 22 | 42052363 | CSDC2 | ENSG00000172346.10 | 4.34E-7 | 0 | 95596 | gtex_brain_ba24 |
| rs132793 | 22 | 42063681 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 106914 | gtex_brain_ba24 |
| rs132796 | 22 | 42063961 | CSDC2 | ENSG00000172346.10 | 3.901E-6 | 0 | 107194 | gtex_brain_ba24 |
| rs132797 | 22 | 42064765 | CSDC2 | ENSG00000172346.10 | 1.956E-6 | 0 | 107998 | gtex_brain_ba24 |
| rs8779 | 22 | 42070276 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 113509 | gtex_brain_ba24 |
| rs1811113 | 22 | 42073134 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 116367 | gtex_brain_ba24 |
| rs949438 | 22 | 42074042 | CSDC2 | ENSG00000172346.10 | 1.739E-6 | 0 | 117275 | gtex_brain_ba24 |
| rs5751136 | 22 | 42075581 | CSDC2 | ENSG00000172346.10 | 3.699E-7 | 0 | 118814 | gtex_brain_ba24 |
| rs5758408 | 22 | 42077737 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 120970 | gtex_brain_ba24 |
| rs5758412 | 22 | 42080803 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 124036 | gtex_brain_ba24 |
| rs13057349 | 22 | 42081697 | CSDC2 | ENSG00000172346.10 | 2.307E-7 | 0 | 124930 | gtex_brain_ba24 |
| rs13056262 | 22 | 42081921 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 125154 | gtex_brain_ba24 |
| rs5758415 | 22 | 42082497 | CSDC2 | ENSG00000172346.10 | 1.924E-6 | 0 | 125730 | gtex_brain_ba24 |
| rs739135 | 22 | 42090069 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 133302 | gtex_brain_ba24 |
| rs2187795 | 22 | 42092225 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 135458 | gtex_brain_ba24 |
| rs8138780 | 22 | 42097462 | CSDC2 | ENSG00000172346.10 | 4.534E-7 | 0 | 140695 | gtex_brain_ba24 |
| rs5751139 | 22 | 42099981 | CSDC2 | ENSG00000172346.10 | 6.985E-7 | 0 | 143214 | gtex_brain_ba24 |
| rs739136 | 22 | 42100275 | CSDC2 | ENSG00000172346.10 | 6.985E-7 | 0 | 143508 | gtex_brain_ba24 |
| rs6002445 | 22 | 42100681 | CSDC2 | ENSG00000172346.10 | 6.985E-7 | 0 | 143914 | gtex_brain_ba24 |
| rs5758428 | 22 | 42106216 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 149449 | gtex_brain_ba24 |
| rs2413653 | 22 | 42106996 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 150229 | gtex_brain_ba24 |
| rs2413654 | 22 | 42107262 | CSDC2 | ENSG00000172346.10 | 1.484E-6 | 0 | 150495 | gtex_brain_ba24 |
| rs5751141 | 22 | 42107745 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 150978 | gtex_brain_ba24 |
| rs7364264 | 22 | 42108253 | CSDC2 | ENSG00000172346.10 | 1.295E-6 | 0 | 151486 | gtex_brain_ba24 |
| rs5758432 | 22 | 42111693 | CSDC2 | ENSG00000172346.10 | 3.423E-6 | 0 | 154926 | gtex_brain_ba24 |
| rs5751142 | 22 | 42115050 | CSDC2 | ENSG00000172346.10 | 8.128E-8 | 0 | 158283 | gtex_brain_ba24 |
| rs5996054 | 22 | 42117065 | CSDC2 | ENSG00000172346.10 | 7.211E-7 | 0 | 160298 | gtex_brain_ba24 |
| rs739129 | 22 | 42118249 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 161482 | gtex_brain_ba24 |
| rs739132 | 22 | 42123099 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 166332 | gtex_brain_ba24 |
| rs60247043 | 22 | 42123615 | CSDC2 | ENSG00000172346.10 | 7.198E-7 | 0 | 166848 | gtex_brain_ba24 |
| rs5758436 | 22 | 42124265 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 167498 | gtex_brain_ba24 |
| rs200368821 | 22 | 42124873 | CSDC2 | ENSG00000172346.10 | 6.902E-7 | 0 | 168106 | gtex_brain_ba24 |
| rs2092275 | 22 | 42129964 | CSDC2 | ENSG00000172346.10 | 7.175E-7 | 0 | 173197 | gtex_brain_ba24 |
| rs5758439 | 22 | 42131762 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 174995 | gtex_brain_ba24 |
| rs5751145 | 22 | 42133552 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 176785 | gtex_brain_ba24 |
| rs5758444 | 22 | 42133921 | CSDC2 | ENSG00000172346.10 | 1.026E-7 | 0 | 177154 | gtex_brain_ba24 |
| rs2899346 | 22 | 42134895 | CSDC2 | ENSG00000172346.10 | 7.202E-7 | 0 | 178128 | gtex_brain_ba24 |
| rs768414 | 22 | 42135751 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 178984 | gtex_brain_ba24 |
| rs8141103 | 22 | 42136930 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 180163 | gtex_brain_ba24 |
| rs5758446 | 22 | 42138106 | CSDC2 | ENSG00000172346.10 | 7.154E-7 | 0 | 181339 | gtex_brain_ba24 |
| rs5751147 | 22 | 42139054 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 182287 | gtex_brain_ba24 |
| rs5751148 | 22 | 42139078 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 182311 | gtex_brain_ba24 |
| rs10706108 | 22 | 42139461 | CSDC2 | ENSG00000172346.10 | 5.471E-7 | 0 | 182694 | gtex_brain_ba24 |
| rs5751149 | 22 | 42139501 | CSDC2 | ENSG00000172346.10 | 7.124E-7 | 0 | 182734 | gtex_brain_ba24 |
| rs59429934 | 22 | 42140730 | CSDC2 | ENSG00000172346.10 | 2.782E-6 | 0 | 183963 | gtex_brain_ba24 |
| rs964898 | 22 | 42142306 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 185539 | gtex_brain_ba24 |
| rs964899 | 22 | 42142386 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 185619 | gtex_brain_ba24 |
| rs1883369 | 22 | 42143572 | CSDC2 | ENSG00000172346.10 | 7.24E-7 | 0 | 186805 | gtex_brain_ba24 |
| rs1807725 | 22 | 42147725 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 190958 | gtex_brain_ba24 |
| rs1534932 | 22 | 42150146 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 193379 | gtex_brain_ba24 |
| rs2050031 | 22 | 42152266 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 195499 | gtex_brain_ba24 |
| rs2050032 | 22 | 42152429 | CSDC2 | ENSG00000172346.10 | 3.315E-6 | 0 | 195662 | gtex_brain_ba24 |
| rs5751150 | 22 | 42153292 | CSDC2 | ENSG00000172346.10 | 7.154E-7 | 0 | 196525 | gtex_brain_ba24 |
| rs5751153 | 22 | 42156561 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 199794 | gtex_brain_ba24 |
| rs2899347 | 22 | 42158204 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 201437 | gtex_brain_ba24 |
| rs713988 | 22 | 42159072 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 202305 | gtex_brain_ba24 |
| rs737749 | 22 | 42159073 | CSDC2 | ENSG00000172346.10 | 1.602E-6 | 0 | 202306 | gtex_brain_ba24 |
| rs2050033 | 22 | 42159229 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 202462 | gtex_brain_ba24 |
| rs5758461 | 22 | 42162189 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 205422 | gtex_brain_ba24 |
| rs2899348 | 22 | 42164516 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 207749 | gtex_brain_ba24 |
| rs2899349 | 22 | 42164660 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 207893 | gtex_brain_ba24 |
| rs1983576 | 22 | 42166486 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 209719 | gtex_brain_ba24 |
| rs5996062 | 22 | 42167464 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 210697 | gtex_brain_ba24 |
| rs6002474 | 22 | 42168181 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 211414 | gtex_brain_ba24 |
| rs5996063 | 22 | 42168767 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 212000 | gtex_brain_ba24 |
| rs5751156 | 22 | 42170025 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 213258 | gtex_brain_ba24 |
| rs6519289 | 22 | 42170432 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 213665 | gtex_brain_ba24 |
| rs5758464 | 22 | 42171300 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 214533 | gtex_brain_ba24 |
| rs5758465 | 22 | 42175314 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 218547 | gtex_brain_ba24 |
| rs5751160 | 22 | 42175695 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 218928 | gtex_brain_ba24 |
| rs45500192 | 22 | 42177899 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 221132 | gtex_brain_ba24 |
| rs9607841 | 22 | 42186838 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 230071 | gtex_brain_ba24 |
| rs9611667 | 22 | 42187015 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 230248 | gtex_brain_ba24 |
| rs73163343 | 22 | 42192482 | CSDC2 | ENSG00000172346.10 | 3.493E-7 | 0 | 235715 | gtex_brain_ba24 |
| rs9607842 | 22 | 42192722 | CSDC2 | ENSG00000172346.10 | 3.497E-7 | 0 | 235955 | gtex_brain_ba24 |
| rs4822052 | 22 | 42193741 | CSDC2 | ENSG00000172346.10 | 4.904E-6 | 0 | 236974 | gtex_brain_ba24 |
| rs4820443 | 22 | 42193913 | CSDC2 | ENSG00000172346.10 | 3.497E-7 | 0 | 237146 | gtex_brain_ba24 |
| rs139560 | 22 | 42194962 | CSDC2 | ENSG00000172346.10 | 3.497E-7 | 0 | 238195 | gtex_brain_ba24 |
| rs139561 | 22 | 42195410 | CSDC2 | ENSG00000172346.10 | 3.497E-7 | 0 | 238643 | gtex_brain_ba24 |
| rs139562 | 22 | 42196684 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 239917 | gtex_brain_ba24 |
| rs139564 | 22 | 42198896 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 242129 | gtex_brain_ba24 |
| rs139566 | 22 | 42199277 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 242510 | gtex_brain_ba24 |
| rs73163354 | 22 | 42200916 | CSDC2 | ENSG00000172346.10 | 7.104E-7 | 0 | 244149 | gtex_brain_ba24 |
| rs4820444 | 22 | 42202606 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 245839 | gtex_brain_ba24 |
| rs112524762 | 22 | 42202944 | CSDC2 | ENSG00000172346.10 | 6.923E-7 | 0 | 246177 | gtex_brain_ba24 |
| rs9611671 | 22 | 42204113 | CSDC2 | ENSG00000172346.10 | 7.096E-7 | 0 | 247346 | gtex_brain_ba24 |
| rs4512 | 22 | 42206084 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 249317 | gtex_brain_ba24 |
| rs59926444 | 22 | 42208640 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 251873 | gtex_brain_ba24 |
| rs9611672 | 22 | 42209922 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 253155 | gtex_brain_ba24 |
| rs4822053 | 22 | 42212936 | CSDC2 | ENSG00000172346.10 | 2.729E-6 | 0 | 256169 | gtex_brain_ba24 |
| rs139571 | 22 | 42214238 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 257471 | gtex_brain_ba24 |
| rs139572 | 22 | 42214532 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 257765 | gtex_brain_ba24 |
| rs139573 | 22 | 42214785 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 258018 | gtex_brain_ba24 |
| rs4820446 | 22 | 42215684 | CSDC2 | ENSG00000172346.10 | 7.153E-7 | 0 | 258917 | gtex_brain_ba24 |
| rs6002505 | 22 | 42216149 | CSDC2 | ENSG00000172346.10 | 4.701E-6 | 0 | 259382 | gtex_brain_ba24 |
| rs7364123 | 22 | 42216326 | CSDC2 | ENSG00000172346.10 | 4.356E-6 | 0 | 259559 | gtex_brain_ba24 |
| rs4822044 | 22 | 41979668 | CSDC2 | ENSG00000172346.10 | 5.199E-6 | 0.02 | 22901 | gtex_brain_putamen_basal |
| rs112898513 | 22 | 42010901 | CSDC2 | ENSG00000172346.10 | 3.624E-6 | 0.02 | 54134 | gtex_brain_putamen_basal |
| rs132796 | 22 | 42063961 | CSDC2 | ENSG00000172346.10 | 7.325E-6 | 0.02 | 107194 | gtex_brain_putamen_basal |
| rs13057349 | 22 | 42081697 | CSDC2 | ENSG00000172346.10 | 8.639E-6 | 0.02 | 124930 | gtex_brain_putamen_basal |
| rs139545 | 22 | 42181498 | CSDC2 | ENSG00000172346.10 | 7.198E-6 | 0.02 | 224731 | gtex_brain_putamen_basal |
| rs73163343 | 22 | 42192482 | CSDC2 | ENSG00000172346.10 | 6.85E-6 | 0.02 | 235715 | gtex_brain_putamen_basal |
| rs9607842 | 22 | 42192722 | CSDC2 | ENSG00000172346.10 | 6.715E-6 | 0.02 | 235955 | gtex_brain_putamen_basal |
| rs4820443 | 22 | 42193913 | CSDC2 | ENSG00000172346.10 | 6.715E-6 | 0.02 | 237146 | gtex_brain_putamen_basal |
| rs139560 | 22 | 42194962 | CSDC2 | ENSG00000172346.10 | 6.715E-6 | 0.02 | 238195 | gtex_brain_putamen_basal |
| rs139561 | 22 | 42195410 | CSDC2 | ENSG00000172346.10 | 6.715E-6 | 0.02 | 238643 | gtex_brain_putamen_basal |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
No co-expressed genes in brain regions
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| SENESE HDAC1 TARGETS DN | 260 | 143 | All SZGR 2.0 genes in this pathway |
| SENESE HDAC1 AND HDAC2 TARGETS DN | 232 | 139 | All SZGR 2.0 genes in this pathway |
| KIM WT1 TARGETS UP | 214 | 155 | All SZGR 2.0 genes in this pathway |
| KIM WT1 TARGETS 8HR UP | 164 | 122 | All SZGR 2.0 genes in this pathway |
| KIM WT1 TARGETS 12HR UP | 162 | 116 | All SZGR 2.0 genes in this pathway |
| GRAESSMANN APOPTOSIS BY SERUM DEPRIVATION DN | 234 | 147 | All SZGR 2.0 genes in this pathway |
| GRAESSMANN RESPONSE TO MC AND SERUM DEPRIVATION DN | 84 | 54 | All SZGR 2.0 genes in this pathway |
| GAUSSMANN MLL AF4 FUSION TARGETS A DN | 90 | 61 | All SZGR 2.0 genes in this pathway |
| PEREZ TP53 TARGETS | 1174 | 695 | All SZGR 2.0 genes in this pathway |
| JOHANSSON BRAIN CANCER EARLY VS LATE DN | 45 | 35 | All SZGR 2.0 genes in this pathway |
| LEE TARGETS OF PTCH1 AND SUFU DN | 83 | 69 | All SZGR 2.0 genes in this pathway |
| CHEN LVAD SUPPORT OF FAILING HEART UP | 103 | 69 | All SZGR 2.0 genes in this pathway |
| ZHENG GLIOBLASTOMA PLASTICITY UP | 250 | 168 | All SZGR 2.0 genes in this pathway |
| WEST ADRENOCORTICAL TUMOR DN | 546 | 362 | All SZGR 2.0 genes in this pathway |
| SETLUR PROSTATE CANCER TMPRSS2 ERG FUSION DN | 20 | 12 | All SZGR 2.0 genes in this pathway |
| PANGAS TUMOR SUPPRESSION BY SMAD1 AND SMAD5 UP | 134 | 85 | All SZGR 2.0 genes in this pathway |
| DELACROIX RARG BOUND MEF | 367 | 231 | All SZGR 2.0 genes in this pathway |
| LIM MAMMARY STEM CELL UP | 489 | 314 | All SZGR 2.0 genes in this pathway |