Gene Page: AMT
Summary ?
| GeneID | 275 |
| Symbol | AMT |
| Synonyms | GCE|GCST|GCVT|NKH |
| Description | aminomethyltransferase |
| Reference | MIM:238310|HGNC:HGNC:473|Ensembl:ENSG00000145020|HPRD:01997|Vega:OTTHUMG00000156847 |
| Gene type | protein-coding |
| Map location | 3p21.31 |
| Pascal p-value | 0.029 |
| Sherlock p-value | 0.015 |
| Fetal beta | -0.034 |
| eGene | Anterior cingulate cortex BA24 Caudate basal ganglia Cerebellar Hemisphere Cerebellum Cortex Frontal Cortex BA9 Hippocampus Nucleus accumbens basal ganglia Putamen basal ganglia Myers' cis & trans Meta |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:PGCnp | Genome-wide Association Study | GWAS | |
| PMID:cooccur | High-throughput literature-search | Systematic search in PubMed for genes co-occurring with SCZ keywords. A total of 3027 genes were included. | |
| Literature | High-throughput literature-search | Co-occurance with Schizophrenia keywords: schizophrenia,schizophrenic,schizophrenics,schizophrenias | Click to show details |
Section I. Genetics and epigenetics annotation
eQTL annotation
| SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
|---|---|---|---|---|---|---|---|---|
| rs16829545 | chr2 | 151977407 | AMT | 275 | 8.345E-9 | trans | ||
| rs3845734 | chr2 | 171125572 | AMT | 275 | 0.01 | trans | ||
| rs7584986 | chr2 | 184111432 | AMT | 275 | 0 | trans | ||
| rs17762315 | chr5 | 76807576 | AMT | 275 | 0.15 | trans | ||
| rs7787830 | chr7 | 98797019 | AMT | 275 | 0.07 | trans | ||
| rs16955618 | chr15 | 29937543 | AMT | 275 | 7.761E-11 | trans | ||
| rs58107922 | 3 | 48724599 | AMT | ENSG00000145020.10 | 6.008E-6 | 0 | 735587 | gtex_brain_ba24 |
| rs6806356 | 3 | 48727636 | AMT | ENSG00000145020.10 | 5.305E-6 | 0 | 732550 | gtex_brain_ba24 |
| rs4858799 | 3 | 48728204 | AMT | ENSG00000145020.10 | 5.317E-6 | 0 | 731982 | gtex_brain_ba24 |
| rs4858830 | 3 | 48734002 | AMT | ENSG00000145020.10 | 5.305E-6 | 0 | 726184 | gtex_brain_ba24 |
| rs201593848 | 3 | 48734470 | AMT | ENSG00000145020.10 | 6.554E-6 | 0 | 725716 | gtex_brain_ba24 |
| rs6442129 | 3 | 48735256 | AMT | ENSG00000145020.10 | 5.305E-6 | 0 | 724930 | gtex_brain_ba24 |
| rs7610519 | 3 | 48746427 | AMT | ENSG00000145020.10 | 5.305E-6 | 0 | 713759 | gtex_brain_ba24 |
| rs9882443 | 3 | 48749064 | AMT | ENSG00000145020.10 | 5.305E-6 | 0 | 711122 | gtex_brain_ba24 |
| rs4858800 | 3 | 48755820 | AMT | ENSG00000145020.10 | 5.007E-6 | 0 | 704366 | gtex_brain_ba24 |
| rs10865953 | 3 | 48759562 | AMT | ENSG00000145020.10 | 3.265E-6 | 0 | 700624 | gtex_brain_ba24 |
| rs9848268 | 3 | 48762271 | AMT | ENSG00000145020.10 | 2.298E-6 | 0 | 697915 | gtex_brain_ba24 |
| rs7641050 | 3 | 48762507 | AMT | ENSG00000145020.10 | 2.957E-6 | 0 | 697679 | gtex_brain_ba24 |
| rs9873227 | 3 | 48773108 | AMT | ENSG00000145020.10 | 2.346E-6 | 0 | 687078 | gtex_brain_ba24 |
| rs6801211 | 3 | 48774420 | AMT | ENSG00000145020.10 | 1.452E-6 | 0 | 685766 | gtex_brain_ba24 |
| rs6796790 | 3 | 48780317 | AMT | ENSG00000145020.10 | 1.452E-6 | 0 | 679869 | gtex_brain_ba24 |
| rs6442131 | 3 | 48782573 | AMT | ENSG00000145020.10 | 1.452E-6 | 0 | 677613 | gtex_brain_ba24 |
| rs14018 | 3 | 48784270 | AMT | ENSG00000145020.10 | 2.386E-6 | 0 | 675916 | gtex_brain_ba24 |
| rs6766238 | 3 | 48801929 | AMT | ENSG00000145020.10 | 2.286E-6 | 0 | 658257 | gtex_brain_ba24 |
| rs201181809 | 3 | 48932474 | AMT | ENSG00000145020.10 | 7.896E-6 | 0 | 527712 | gtex_brain_ba24 |
| rs4955426 | 3 | 49143438 | AMT | ENSG00000145020.10 | 2.298E-7 | 0 | 316748 | gtex_brain_ba24 |
| rs4955411 | 3 | 49145304 | AMT | ENSG00000145020.10 | 8.314E-7 | 0 | 314882 | gtex_brain_ba24 |
| rs4292260 | 3 | 49148890 | AMT | ENSG00000145020.10 | 8.314E-7 | 0 | 311296 | gtex_brain_ba24 |
| rs9865051 | 3 | 49166069 | AMT | ENSG00000145020.10 | 6.996E-7 | 0 | 294117 | gtex_brain_ba24 |
| rs7617480 | 3 | 49210732 | AMT | ENSG00000145020.10 | 6.465E-7 | 0 | 249454 | gtex_brain_ba24 |
| rs9586 | 3 | 49213637 | AMT | ENSG00000145020.10 | 1.202E-6 | 0 | 246549 | gtex_brain_ba24 |
| rs13084037 | 3 | 49214066 | AMT | ENSG00000145020.10 | 1.407E-6 | 0 | 246120 | gtex_brain_ba24 |
| rs9831648 | 3 | 49214303 | AMT | ENSG00000145020.10 | 1.249E-6 | 0 | 245883 | gtex_brain_ba24 |
| rs9834003 | 3 | 49216472 | AMT | ENSG00000145020.10 | 7.012E-7 | 0 | 243714 | gtex_brain_ba24 |
| rs4955421 | 3 | 49218888 | AMT | ENSG00000145020.10 | 7.012E-7 | 0 | 241298 | gtex_brain_ba24 |
| rs7631586 | 3 | 49220137 | AMT | ENSG00000145020.10 | 2.258E-7 | 0 | 240049 | gtex_brain_ba24 |
| rs4955423 | 3 | 49220448 | AMT | ENSG00000145020.10 | 7.012E-7 | 0 | 239738 | gtex_brain_ba24 |
| rs7432077 | 3 | 49222904 | AMT | ENSG00000145020.10 | 6.395E-7 | 0 | 237282 | gtex_brain_ba24 |
| rs6446256 | 3 | 49224210 | AMT | ENSG00000145020.10 | 7.012E-7 | 0 | 235976 | gtex_brain_ba24 |
| rs7429661 | 3 | 49228800 | AMT | ENSG00000145020.10 | 1.846E-6 | 0 | 231386 | gtex_brain_ba24 |
| rs11130183 | 3 | 49228946 | AMT | ENSG00000145020.10 | 7.012E-7 | 0 | 231240 | gtex_brain_ba24 |
| rs6808036 | 3 | 49236439 | AMT | ENSG00000145020.10 | 6.716E-7 | 0 | 223747 | gtex_brain_ba24 |
| rs13091206 | 3 | 49238718 | AMT | ENSG00000145020.10 | 1.195E-6 | 0 | 221468 | gtex_brain_ba24 |
| rs6769821 | 3 | 49244657 | AMT | ENSG00000145020.10 | 2.267E-7 | 0 | 215529 | gtex_brain_ba24 |
| rs4955439 | 3 | 49245645 | AMT | ENSG00000145020.10 | 1.846E-6 | 0 | 214541 | gtex_brain_ba24 |
| rs9867285 | 3 | 49249381 | AMT | ENSG00000145020.10 | 1.846E-6 | 0 | 210805 | gtex_brain_ba24 |
| rs6446257 | 3 | 49253492 | AMT | ENSG00000145020.10 | 1.846E-6 | 0 | 206694 | gtex_brain_ba24 |
| rs6803264 | 3 | 49254427 | AMT | ENSG00000145020.10 | 4.128E-7 | 0 | 205759 | gtex_brain_ba24 |
| rs2082923 | 3 | 49255172 | AMT | ENSG00000145020.10 | 7.326E-7 | 0 | 205014 | gtex_brain_ba24 |
| rs4955427 | 3 | 49260646 | AMT | ENSG00000145020.10 | 2.481E-7 | 0 | 199540 | gtex_brain_ba24 |
| rs2099526 | 3 | 49269758 | AMT | ENSG00000145020.10 | 3.487E-6 | 0 | 190428 | gtex_brain_ba24 |
| rs11130186 | 3 | 49275828 | AMT | ENSG00000145020.10 | 7.012E-7 | 0 | 184358 | gtex_brain_ba24 |
| rs10154992 | 3 | 49276077 | AMT | ENSG00000145020.10 | 7.012E-7 | 0 | 184109 | gtex_brain_ba24 |
| rs12637346 | 3 | 49284513 | AMT | ENSG00000145020.10 | 4.57E-6 | 0 | 175673 | gtex_brain_ba24 |
| rs4955443 | 3 | 49286618 | AMT | ENSG00000145020.10 | 7.012E-7 | 0 | 173568 | gtex_brain_ba24 |
| rs4384984 | 3 | 49289878 | AMT | ENSG00000145020.10 | 7.012E-7 | 0 | 170308 | gtex_brain_ba24 |
| rs7626076 | 3 | 49298139 | AMT | ENSG00000145020.10 | 1.846E-6 | 0 | 162047 | gtex_brain_ba24 |
| rs4955417 | 3 | 49298205 | AMT | ENSG00000145020.10 | 7.012E-7 | 0 | 161981 | gtex_brain_ba24 |
| rs11130187 | 3 | 49307872 | AMT | ENSG00000145020.10 | 8.146E-7 | 0 | 152314 | gtex_brain_ba24 |
| rs6809851 | 3 | 49309787 | AMT | ENSG00000145020.10 | 1.846E-6 | 0 | 150399 | gtex_brain_ba24 |
| rs6778080 | 3 | 49317338 | AMT | ENSG00000145020.10 | 7.012E-7 | 0 | 142848 | gtex_brain_ba24 |
| rs4955414 | 3 | 49317727 | AMT | ENSG00000145020.10 | 6.935E-7 | 0 | 142459 | gtex_brain_ba24 |
| rs9833388 | 3 | 49320183 | AMT | ENSG00000145020.10 | 1.681E-6 | 0 | 140003 | gtex_brain_ba24 |
| rs9811047 | 3 | 49328833 | AMT | ENSG00000145020.10 | 1.25E-9 | 0 | 131353 | gtex_brain_ba24 |
| rs11710434 | 3 | 49346130 | AMT | ENSG00000145020.10 | 5.507E-8 | 0 | 114056 | gtex_brain_ba24 |
| rs11130189 | 3 | 49347357 | AMT | ENSG00000145020.10 | 1.947E-6 | 0 | 112829 | gtex_brain_ba24 |
| rs9881860 | 3 | 49352522 | AMT | ENSG00000145020.10 | 1.363E-7 | 0 | 107664 | gtex_brain_ba24 |
| rs9860285 | 3 | 49355374 | AMT | ENSG00000145020.10 | 4.681E-8 | 0 | 104812 | gtex_brain_ba24 |
| rs11720542 | 3 | 49357427 | AMT | ENSG00000145020.10 | 5.507E-8 | 0 | 102759 | gtex_brain_ba24 |
| rs6809204 | 3 | 49369383 | AMT | ENSG00000145020.10 | 1.363E-7 | 0 | 90803 | gtex_brain_ba24 |
| rs4955430 | 3 | 49378088 | AMT | ENSG00000145020.10 | 5.545E-8 | 0 | 82098 | gtex_brain_ba24 |
| rs9834535 | 3 | 49378797 | AMT | ENSG00000145020.10 | 5.859E-8 | 0 | 81389 | gtex_brain_ba24 |
| rs6784203 | 3 | 49381678 | AMT | ENSG00000145020.10 | 1.388E-7 | 0 | 78508 | gtex_brain_ba24 |
| rs6774724 | 3 | 49381911 | AMT | ENSG00000145020.10 | 1.425E-7 | 0 | 78275 | gtex_brain_ba24 |
| rs4955424 | 3 | 49383078 | AMT | ENSG00000145020.10 | 3.013E-7 | 0 | 77108 | gtex_brain_ba24 |
| rs4955425 | 3 | 49383178 | AMT | ENSG00000145020.10 | 2.831E-7 | 0 | 77008 | gtex_brain_ba24 |
| rs4955440 | 3 | 49388633 | AMT | ENSG00000145020.10 | 5.644E-8 | 0 | 71553 | gtex_brain_ba24 |
| rs11720657 | 3 | 49392620 | AMT | ENSG00000145020.10 | 3.135E-8 | 0 | 67566 | gtex_brain_ba24 |
| rs6790105 | 3 | 49393409 | AMT | ENSG00000145020.10 | 4.574E-8 | 0 | 66777 | gtex_brain_ba24 |
| rs3448 | 3 | 49396751 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | 63435 | gtex_brain_ba24 |
| rs974495 | 3 | 49400482 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | 59704 | gtex_brain_ba24 |
| rs6446262 | 3 | 49401153 | AMT | ENSG00000145020.10 | 4.427E-8 | 0 | 59033 | gtex_brain_ba24 |
| rs11130190 | 3 | 49402137 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | 58049 | gtex_brain_ba24 |
| rs9812360 | 3 | 49402351 | AMT | ENSG00000145020.10 | 2.504E-8 | 0 | 57835 | gtex_brain_ba24 |
| rs6796147 | 3 | 49408816 | AMT | ENSG00000145020.10 | 3.711E-8 | 0 | 51370 | gtex_brain_ba24 |
| rs11719762 | 3 | 49409002 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | 51184 | gtex_brain_ba24 |
| rs4955413 | 3 | 49410066 | AMT | ENSG00000145020.10 | 3.662E-8 | 0 | 50120 | gtex_brain_ba24 |
| rs6769744 | 3 | 49412015 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | 48171 | gtex_brain_ba24 |
| rs6775069 | 3 | 49412496 | AMT | ENSG00000145020.10 | 3.32E-8 | 0 | 47690 | gtex_brain_ba24 |
| rs9847585 | 3 | 49414062 | AMT | ENSG00000145020.10 | 8.099E-8 | 0 | 46124 | gtex_brain_ba24 |
| rs9854297 | 3 | 49417896 | AMT | ENSG00000145020.10 | 3.882E-7 | 0 | 42290 | gtex_brain_ba24 |
| rs55897702 | 3 | 49418373 | AMT | ENSG00000145020.10 | 4.62E-8 | 0 | 41813 | gtex_brain_ba24 |
| rs58545098 | 3 | 49423141 | AMT | ENSG00000145020.10 | 7.694E-8 | 0 | 37045 | gtex_brain_ba24 |
| rs62259943 | 3 | 49425167 | AMT | ENSG00000145020.10 | 4.346E-8 | 0 | 35019 | gtex_brain_ba24 |
| rs9842132 | 3 | 49427933 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | 32253 | gtex_brain_ba24 |
| rs62259944 | 3 | 49430883 | AMT | ENSG00000145020.10 | 1.107E-7 | 0 | 29303 | gtex_brain_ba24 |
| rs10155014 | 3 | 49432321 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | 27865 | gtex_brain_ba24 |
| rs6785045 | 3 | 49435243 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | 24943 | gtex_brain_ba24 |
| rs9861027 | 3 | 49436584 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | 23602 | gtex_brain_ba24 |
| rs56127630 | 3 | 49438036 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | 22150 | gtex_brain_ba24 |
| rs7648995 | 3 | 49438803 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | 21383 | gtex_brain_ba24 |
| rs2140270 | 3 | 49439440 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | 20746 | gtex_brain_ba24 |
| rs2177268 | 3 | 49439725 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | 20461 | gtex_brain_ba24 |
| rs62259947 | 3 | 49439924 | AMT | ENSG00000145020.10 | 4.346E-8 | 0 | 20262 | gtex_brain_ba24 |
| rs9757181 | 3 | 49441847 | AMT | ENSG00000145020.10 | 4.693E-8 | 0 | 18339 | gtex_brain_ba24 |
| rs11715060 | 3 | 49442020 | AMT | ENSG00000145020.10 | 3.078E-8 | 0 | 18166 | gtex_brain_ba24 |
| rs9817807 | 3 | 49442548 | AMT | ENSG00000145020.10 | 3.588E-8 | 0 | 17638 | gtex_brain_ba24 |
| rs13096474 | 3 | 49443081 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | 17105 | gtex_brain_ba24 |
| rs73088137 | 3 | 49448423 | AMT | ENSG00000145020.10 | 4.346E-8 | 0 | 11763 | gtex_brain_ba24 |
| rs940045 | 3 | 49449638 | AMT | ENSG00000145020.10 | 3.104E-8 | 0 | 10548 | gtex_brain_ba24 |
| rs7620024 | 3 | 49451691 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | 8495 | gtex_brain_ba24 |
| rs7638750 | 3 | 49452957 | AMT | ENSG00000145020.10 | 3.991E-8 | 0 | 7229 | gtex_brain_ba24 |
| rs1464569 | 3 | 49460350 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | -164 | gtex_brain_ba24 |
| rs8897 | 3 | 49460407 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | -221 | gtex_brain_ba24 |
| rs6446275 | 3 | 49466871 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | -6685 | gtex_brain_ba24 |
| rs77648866 | 3 | 49469449 | AMT | ENSG00000145020.10 | 4.298E-8 | 0 | -9263 | gtex_brain_ba24 |
| rs62259933 | 3 | 49469703 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | -9517 | gtex_brain_ba24 |
| rs6805609 | 3 | 49471522 | AMT | ENSG00000145020.10 | 4.346E-8 | 0 | -11336 | gtex_brain_ba24 |
| rs7619789 | 3 | 49476263 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | -16077 | gtex_brain_ba24 |
| rs9654010 | 3 | 49480908 | AMT | ENSG00000145020.10 | 2.227E-7 | 0 | -20722 | gtex_brain_ba24 |
| rs60691649 | 3 | 49481438 | AMT | ENSG00000145020.10 | 2.769E-8 | 0 | -21252 | gtex_brain_ba24 |
| rs57273516 | 3 | 49483074 | AMT | ENSG00000145020.10 | 2.83E-8 | 0 | -22888 | gtex_brain_ba24 |
| rs138084484 | 3 | 49483193 | AMT | ENSG00000145020.10 | 3.604E-7 | 0 | -23007 | gtex_brain_ba24 |
| rs11923032 | 3 | 49484992 | AMT | ENSG00000145020.10 | 8.738E-9 | 0 | -24806 | gtex_brain_ba24 |
| rs4855869 | 3 | 49488984 | AMT | ENSG00000145020.10 | 7.137E-8 | 0 | -28798 | gtex_brain_ba24 |
| rs73073004 | 3 | 49490020 | AMT | ENSG00000145020.10 | 8.075E-8 | 0 | -29834 | gtex_brain_ba24 |
| rs113741748 | 3 | 49490780 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | -30594 | gtex_brain_ba24 |
| rs2329025 | 3 | 49496263 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | -36077 | gtex_brain_ba24 |
| rs1106620 | 3 | 49500414 | AMT | ENSG00000145020.10 | 2.671E-8 | 0 | -40228 | gtex_brain_ba24 |
| rs9860055 | 3 | 49506900 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | -46714 | gtex_brain_ba24 |
| rs7613491 | 3 | 49508976 | AMT | ENSG00000145020.10 | 4.346E-8 | 0 | -48790 | gtex_brain_ba24 |
| rs7647973 | 3 | 49510931 | AMT | ENSG00000145020.10 | 4.346E-8 | 0 | -50745 | gtex_brain_ba24 |
| rs9809237 | 3 | 49516350 | AMT | ENSG00000145020.10 | 4.213E-8 | 0 | -56164 | gtex_brain_ba24 |
| rs7355800 | 3 | 49516519 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | -56333 | gtex_brain_ba24 |
| rs72934271 | 3 | 49517668 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | -57482 | gtex_brain_ba24 |
| rs7622786 | 3 | 49518551 | AMT | ENSG00000145020.10 | 4.872E-8 | 0 | -58365 | gtex_brain_ba24 |
| rs1009051 | 3 | 49521549 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | -61363 | gtex_brain_ba24 |
| rs62261183 | 3 | 49522458 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | -62272 | gtex_brain_ba24 |
| rs6783003 | 3 | 49524778 | AMT | ENSG00000145020.10 | 4.141E-8 | 0 | -64592 | gtex_brain_ba24 |
| rs4855858 | 3 | 49529601 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | -69415 | gtex_brain_ba24 |
| rs7374731 | 3 | 49533094 | AMT | ENSG00000145020.10 | 2.877E-8 | 0 | -72908 | gtex_brain_ba24 |
| rs7651372 | 3 | 49533931 | AMT | ENSG00000145020.10 | 4.364E-8 | 0 | -73745 | gtex_brain_ba24 |
| rs3870339 | 3 | 49536863 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | -76677 | gtex_brain_ba24 |
| rs74471041 | 3 | 49542543 | AMT | ENSG00000145020.10 | 3.624E-8 | 0 | -82357 | gtex_brain_ba24 |
| rs149273410 | 3 | 49543515 | AMT | ENSG00000145020.10 | 4.339E-8 | 0 | -83329 | gtex_brain_ba24 |
| rs56324858 | 3 | 49544229 | AMT | ENSG00000145020.10 | 4.801E-6 | 0 | -84043 | gtex_brain_ba24 |
| rs7644148 | 3 | 49545241 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | -85055 | gtex_brain_ba24 |
| rs11405695 | 3 | 49547170 | AMT | ENSG00000145020.10 | 2.756E-8 | 0 | -86984 | gtex_brain_ba24 |
| rs3905330 | 3 | 49550774 | AMT | ENSG00000145020.10 | 3.09E-8 | 0 | -90588 | gtex_brain_ba24 |
| rs9871024 | 3 | 49554241 | AMT | ENSG00000145020.10 | 3.09E-8 | 0 | -94055 | gtex_brain_ba24 |
| rs13322887 | 3 | 49555583 | AMT | ENSG00000145020.10 | 3.09E-8 | 0 | -95397 | gtex_brain_ba24 |
| rs67260454 | 3 | 49560543 | AMT | ENSG00000145020.10 | 3.09E-8 | 0 | -100357 | gtex_brain_ba24 |
| rs72195078 | 3 | 49564316 | AMT | ENSG00000145020.10 | 3.736E-8 | 0 | -104130 | gtex_brain_ba24 |
| rs12583 | 3 | 49571462 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | -111276 | gtex_brain_ba24 |
| rs4052546 | 3 | 49575549 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | -115363 | gtex_brain_ba24 |
| rs1982861 | 3 | 49577665 | AMT | ENSG00000145020.10 | 3.529E-8 | 0 | -117479 | gtex_brain_ba24 |
| rs4855853 | 3 | 49579331 | AMT | ENSG00000145020.10 | 2.592E-7 | 0 | -119145 | gtex_brain_ba24 |
| rs4855838 | 3 | 49579876 | AMT | ENSG00000145020.10 | 3.672E-8 | 0 | -119690 | gtex_brain_ba24 |
| rs10865956 | 3 | 49581559 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | -121373 | gtex_brain_ba24 |
| rs145933528 | 3 | 49582123 | AMT | ENSG00000145020.10 | 7.629E-6 | 0 | -121937 | gtex_brain_ba24 |
| rs4855837 | 3 | 49582677 | AMT | ENSG00000145020.10 | 4.008E-8 | 0 | -122491 | gtex_brain_ba24 |
| rs3866330 | 3 | 49582994 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | -122808 | gtex_brain_ba24 |
| rs11130204 | 3 | 49584243 | AMT | ENSG00000145020.10 | 3.234E-8 | 0 | -124057 | gtex_brain_ba24 |
| rs3870341 | 3 | 49584745 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | -124559 | gtex_brain_ba24 |
| rs56049603 | 3 | 49585243 | AMT | ENSG00000145020.10 | 7.629E-6 | 0 | -125057 | gtex_brain_ba24 |
| rs62261249 | 3 | 49594060 | AMT | ENSG00000145020.10 | 4.684E-8 | 0 | -133874 | gtex_brain_ba24 |
| rs7625857 | 3 | 49596462 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | -136276 | gtex_brain_ba24 |
| rs9862534 | 3 | 49598064 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | -137878 | gtex_brain_ba24 |
| rs4241407 | 3 | 49600319 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | -140133 | gtex_brain_ba24 |
| rs2312462 | 3 | 49601255 | AMT | ENSG00000145020.10 | 3.117E-8 | 0 | -141069 | gtex_brain_ba24 |
| rs11928090 | 3 | 49604904 | AMT | ENSG00000145020.10 | 3.08E-8 | 0 | -144718 | gtex_brain_ba24 |
| rs9848268 | 3 | 48762271 | AMT | ENSG00000145020.10 | 1.949E-6 | 0.04 | 697915 | gtex_brain_putamen_basal |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression during devlopment (BrainCloud)
Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
No co-expressed genes in brain regions
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| KEGG GLYCINE SERINE AND THREONINE METABOLISM | 31 | 26 | All SZGR 2.0 genes in this pathway |
| KEGG ONE CARBON POOL BY FOLATE | 17 | 12 | All SZGR 2.0 genes in this pathway |
| KEGG NITROGEN METABOLISM | 23 | 16 | All SZGR 2.0 genes in this pathway |
| HATADA METHYLATED IN LUNG CANCER UP | 390 | 236 | All SZGR 2.0 genes in this pathway |
| POMEROY MEDULLOBLASTOMA PROGNOSIS UP | 47 | 30 | All SZGR 2.0 genes in this pathway |
| URS ADIPOCYTE DIFFERENTIATION UP | 74 | 51 | All SZGR 2.0 genes in this pathway |
| RODWELL AGING KIDNEY NO BLOOD DN | 150 | 93 | All SZGR 2.0 genes in this pathway |
| RODWELL AGING KIDNEY DN | 145 | 88 | All SZGR 2.0 genes in this pathway |
| RIZKI TUMOR INVASIVENESS 3D UP | 210 | 124 | All SZGR 2.0 genes in this pathway |
| WEST ADRENOCORTICAL TUMOR DN | 546 | 362 | All SZGR 2.0 genes in this pathway |
| MOOTHA HUMAN MITODB 6 2002 | 429 | 260 | All SZGR 2.0 genes in this pathway |
| LEE LIVER CANCER SURVIVAL UP | 185 | 112 | All SZGR 2.0 genes in this pathway |
| MOOTHA MITOCHONDRIA | 447 | 277 | All SZGR 2.0 genes in this pathway |
| MIKKELSEN IPS LCP WITH H3K4ME3 | 174 | 100 | All SZGR 2.0 genes in this pathway |
| HOSHIDA LIVER CANCER SUBCLASS S3 | 266 | 180 | All SZGR 2.0 genes in this pathway |
| DELACROIX RAR BOUND ES | 462 | 273 | All SZGR 2.0 genes in this pathway |