Gene Page: AR
Summary ?
GeneID | 367 |
Symbol | AR |
Synonyms | AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM |
Description | androgen receptor |
Reference | MIM:313700|HGNC:HGNC:644|Ensembl:ENSG00000169083|HPRD:02437|Vega:OTTHUMG00000021740 |
Gene type | protein-coding |
Map location | Xq12 |
Fetal beta | -0.408 |
Gene in Data Sources
Gene set name | Method of gene set | Description | Info |
---|---|---|---|
CV:PGCnp | Genome-wide Association Study | GWAS | |
PMID:cooccur | High-throughput literature-search | Systematic search in PubMed for genes co-occurring with SCZ keywords. A total of 3027 genes were included. | |
Association | A combined odds ratio method (Sun et al. 2008), association studies | 1 | Link to SZGene |
Literature | High-throughput literature-search | Co-occurance with Schizophrenia keywords: schizophrenia,schizophrenic,schizophrenics,schizotypy,schizophrenias,schizotypal | Click to show details |
GO_Annotation | Mapping neuro-related keywords to Gene Ontology annotations | Hits with neuro-related keywords: 1 | |
Network | Shortest path distance of core genes in the Human protein-protein interaction network | Contribution to shortest path in PPI network: 0.1813 |
Section I. Genetics and epigenetics annotation
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression during devlopment (BrainCloud)
Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
No co-expressed genes in brain regions
Section III. Gene Ontology annotation
Molecular function | GO term | Evidence | Neuro keywords | PubMed ID |
---|---|---|---|---|
GO:0005102 | receptor binding | IPI | Neurotransmitter (GO term level: 4) | 11875111 |
GO:0004872 | receptor activity | IEA | - | |
GO:0004882 | androgen receptor activity | IEA | - | |
GO:0004882 | androgen receptor activity | NAS | 10075738 | |
GO:0004882 | androgen receptor activity | TAS | 15572661 | |
GO:0003700 | transcription factor activity | IDA | 15572661 | |
GO:0003700 | transcription factor activity | IEA | - | |
GO:0005496 | steroid binding | IEA | - | |
GO:0005497 | androgen binding | NAS | 10075738 | |
GO:0008270 | zinc ion binding | IEA | - | |
GO:0046872 | metal ion binding | IEA | - | |
GO:0043565 | sequence-specific DNA binding | IEA | - | |
GO:0046983 | protein dimerization activity | NAS | 10075738 | |
Biological process | GO term | Evidence | Neuro keywords | PubMed ID |
GO:0001701 | in utero embryonic development | IEA | - | |
GO:0006355 | regulation of transcription, DNA-dependent | IEA | - | |
GO:0006350 | transcription | IEA | - | |
GO:0016049 | cell growth | NAS | 15572661 | |
GO:0007267 | cell-cell signaling | TAS | 10835690 | |
GO:0007165 | signal transduction | TAS | 10835690 | |
GO:0008283 | cell proliferation | NAS | 10075738 | |
GO:0008584 | male gonad development | IEA | - | |
GO:0007548 | sex differentiation | NAS | 10075738 | |
GO:0006810 | transport | TAS | 10835690 | |
GO:0030850 | prostate gland development | NAS | 10075738 | |
GO:0019102 | male somatic sex determination | IEA | - | |
GO:0030521 | androgen receptor signaling pathway | IEA | - | |
Cellular component | GO term | Evidence | Neuro keywords | PubMed ID |
GO:0005634 | nucleus | IDA | 15572661 | |
GO:0005634 | nucleus | IEA | - | |
GO:0005737 | cytoplasm | IDA | 15572661 |
Section IV. Protein-protein interaction annotation
Interactors | Aliases B | Official full name B | Experimental | Source | PubMed ID |
---|---|---|---|---|---|
AES | AES-1 | AES-2 | ESP1 | GRG | GRG5 | TLE5 | amino-terminal enhancer of split | - | HPRD,BioGRID | 11416139 |
AKT1 | AKT | MGC99656 | PKB | PKB-ALPHA | PRKBA | RAC | RAC-ALPHA | v-akt murine thymoma viral oncogene homolog 1 | Akt phosphorylates AR. | BIND | 11404460 |12621049 |
AKT1 | AKT | MGC99656 | PKB | PKB-ALPHA | PRKBA | RAC | RAC-ALPHA | v-akt murine thymoma viral oncogene homolog 1 | Affinity Capture-Western Reconstituted Complex | BioGRID | 11404460 |
AR | AIS | DHTR | HUMARA | KD | NR3C4 | SBMA | SMAX1 | TFM | androgen receptor | Biochemical Activity Co-crystal Structure Protein-peptide Two-hybrid | BioGRID | 11504717 |12612084 |12682292 |14593076 |14729952 |14966121 |14966297 |15062556 |15256534 |15525515 |
BAG1 | RAP46 | BCL2-associated athanogene | - | HPRD,BioGRID | 11278763 |
BRCA1 | BRCAI | BRCC1 | IRIS | PSCP | RNF53 | breast cancer 1, early onset | - | HPRD,BioGRID | 11016951 |11085509 |
CALM1 | CALML2 | CAMI | DD132 | PHKD | calmodulin 1 (phosphorylase kinase, delta) | Affinity Capture-Western Co-localization Reconstituted Complex | BioGRID | 14695896 |
CALR | CRT | FLJ26680 | RO | SSA | cC1qR | calreticulin | - | HPRD,BioGRID | 8107809 |
CASP1 | ICE | IL1BC | P45 | caspase 1, apoptosis-related cysteine peptidase (interleukin 1, beta, convertase) | Androgen Receptor interacts with caspase 1. This interaction was modeled on a demonstrated interaction between human androgen receptor and caspase 1 from an unspecified species. | BIND | 9535906 |
CASP3 | CPP32 | CPP32B | SCA-1 | caspase 3, apoptosis-related cysteine peptidase | Androgen Receptor interacts with caspase 3. This interaction was modeled on a demonstrated interaction between human androgen receptor and caspase 3 from an unspecified species. | BIND | 9535906 |
CASP7 | CMH-1 | ICE-LAP3 | MCH3 | caspase 7, apoptosis-related cysteine peptidase | Androgen Receptor interacts with caspase 7. | BIND | 9535906 |
CASP8 | ALPS2B | CAP4 | FLICE | FLJ17672 | MACH | MCH5 | MGC78473 | caspase 8, apoptosis-related cysteine peptidase | Androgen Receptor interacts with caspase 8. | BIND | 9535906 |
CAV1 | CAV | MSTP085 | VIP21 | caveolin 1, caveolae protein, 22kDa | - | HPRD,BioGRID | 11278309 |
CAV1 | CAV | MSTP085 | VIP21 | caveolin 1, caveolae protein, 22kDa | Caveolin-1 interacts with AR. | BIND | 11278309 |
CCND1 | BCL1 | D11S287E | PRAD1 | U21B31 | cyclin D1 | - | HPRD,BioGRID | 10344732 |
CCNE1 | CCNE | cyclin E1 | - | HPRD,BioGRID | 10953010 |
CCNH | CAK | p34 | p37 | cyclin H | Reconstituted Complex | BioGRID | 10734072 |
CDC25B | - | cell division cycle 25 homolog B (S. pombe) | - | HPRD,BioGRID | 12569365 |
CDC37 | P50CDC37 | cell division cycle 37 homolog (S. cerevisiae) | - | HPRD,BioGRID | 11085988 |
CDK7 | CAK1 | CDKN7 | MO15 | STK1 | p39MO15 | cyclin-dependent kinase 7 | Affinity Capture-Western Reconstituted Complex | BioGRID | 10734072 |
CDK9 | C-2k | CDC2L4 | CTK1 | PITALRE | TAK | cyclin-dependent kinase 9 | - | HPRD,BioGRID | 11266437 |
CEBPA | C/EBP-alpha | CEBP | CCAAT/enhancer binding protein (C/EBP), alpha | Reconstituted Complex | BioGRID | 9817600 |
CEBPB | C/EBP-beta | CRP2 | IL6DBP | LAP | MGC32080 | NF-IL6 | TCF5 | CCAAT/enhancer binding protein (C/EBP), beta | Reconstituted Complex | BioGRID | 9817600 |
COX5B | COXVB | cytochrome c oxidase subunit Vb | - | HPRD,BioGRID | 11719263 |
CREBBP | CBP | KAT3A | RSTS | CREB binding protein | - | HPRD,BioGRID | 9482849 |
CTNNB1 | CTNNB | DKFZp686D02253 | FLJ25606 | FLJ37923 | catenin (cadherin-associated protein), beta 1, 88kDa | - | HPRD,BioGRID | 11916967 |
DAP3 | DAP-3 | DKFZp686G12159 | MGC126058 | MGC126059 | MRP-S29 | MRPS29 | bMRP-10 | death associated protein 3 | - | HPRD,BioGRID | 10903152 |
DAXX | BING2 | DAP6 | EAP1 | MGC126245 | MGC126246 | death-domain associated protein | Affinity Capture-Western Reconstituted Complex Two-hybrid | BioGRID | 15572661 |
DCC | CRC18 | CRCR1 | deleted in colorectal carcinoma | Affinity Capture-Western Reconstituted Complex Two-hybrid | BioGRID | 12864730 |
EFCAB6 | DJBP | FLJ23588 | HSCBCIP1 | KIAA1672 | dJ185D5.1 | EF-hand calcium binding domain 6 | - | HPRD,BioGRID | 12612053 |
EGFR | ERBB | ERBB1 | HER1 | PIG61 | mENA | epidermal growth factor receptor (erythroblastic leukemia viral (v-erb-b) oncogene homolog, avian) | Affinity Capture-Western Co-localization | BioGRID | 15288768 |15305378 |
ESR1 | DKFZp686N23123 | ER | ESR | ESRA | Era | NR3A1 | estrogen receptor 1 | - | HPRD,BioGRID | 12389206 |
ETV5 | ERM | ets variant 5 | Reconstituted Complex | BioGRID | 8798622 |
ETV5 | ERM | ets variant 5 | - | HPRD | 11509567 |
FGF8 | AIGF | HBGF-8 | MGC149376 | fibroblast growth factor 8 (androgen-induced) | AR interacts with FGF8 promoter. | BIND | 12140757 |
FHL2 | AAG11 | DRAL | SLIM3 | four and a half LIM domains 2 | - | HPRD,BioGRID | 10654935 |
FLNA | ABP-280 | ABPX | DKFZp434P031 | FLN | FLN1 | FMD | MNS | NHBP | OPD | OPD1 | OPD2 | filamin A, alpha (actin binding protein 280) | - | HPRD,BioGRID | 12682292 |
FOXA1 | HNF3A | MGC33105 | TCF3A | forkhead box A1 | - | HPRD,BioGRID | 12750453 |
FOXO1 | FKH1 | FKHR | FOXO1A | forkhead box O1 | - | HPRD,BioGRID | 12482965 |
GAPDH | G3PD | GAPD | MGC88685 | glyceraldehyde-3-phosphate dehydrogenase | - | HPRD,BioGRID | 8872471 |
GNB2L1 | Gnb2-rs1 | H12.3 | HLC-7 | PIG21 | RACK1 | guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 | - | HPRD,BioGRID | 12958311 |
GRIP1 | GRIP | glutamate receptor interacting protein 1 | Two-hybrid | BioGRID | 10607837 |
GSK3A | DKFZp686D0638 | glycogen synthase kinase 3 alpha | Affinity Capture-Western | BioGRID | 15361837 |
GSK3B | - | glycogen synthase kinase 3 beta | Affinity Capture-Western Reconstituted Complex | BioGRID | 15178691 |
GSN | DKFZp313L0718 | gelsolin (amyloidosis, Finnish type) | - | HPRD,BioGRID | 12941811 |
GTF2F1 | BTF4 | RAP74 | TF2F1 | TFIIF | general transcription factor IIF, polypeptide 1, 74kDa | - | HPRD,BioGRID | 9238003 |
GTF2F2 | BTF4 | RAP30 | TF2F2 | TFIIF | general transcription factor IIF, polypeptide 2, 30kDa | - | HPRD,BioGRID | 9238003 |
GTF2H1 | BTF2 | TFB1 | TFIIH | general transcription factor IIH, polypeptide 1, 62kDa | - | HPRD,BioGRID | 10734072 |11266437 |
HDAC1 | DKFZp686H12203 | GON-10 | HD1 | RPD3 | RPD3L1 | histone deacetylase 1 | - | HPRD,BioGRID | 11994312 |
HDAC3 | HD3 | RPD3 | RPD3-2 | histone deacetylase 3 | Reconstituted Complex | BioGRID | 12943985 |
HDAC4 | HA6116 | HD4 | HDAC-A | HDACA | KIAA0288 | histone deacetylase 4 | Reconstituted Complex | BioGRID | 12943985 |
HMGB1 | DKFZp686A04236 | HMG1 | HMG3 | SBP-1 | high-mobility group box 1 | - | HPRD,BioGRID | 9671457 |
HMGB2 | HMG2 | high-mobility group box 2 | Reconstituted Complex | BioGRID | 9671457 |
HNF4A | FLJ39654 | HNF4 | HNF4a7 | HNF4a8 | HNF4a9 | MODY | MODY1 | NR2A1 | NR2A21 | TCF | TCF14 | hepatocyte nuclear factor 4, alpha | Co-localization | BioGRID | 12944908 |
HSP90AA1 | FLJ31884 | HSP86 | HSP89A | HSP90A | HSP90N | HSPC1 | HSPCA | HSPCAL1 | HSPCAL4 | HSPN | Hsp89 | Hsp90 | LAP2 | heat shock protein 90kDa alpha (cytosolic), class A member 1 | - | HPRD,BioGRID | 1525041 |
HSPA1A | FLJ54303 | FLJ54370 | FLJ54392 | FLJ54408 | FLJ75127 | HSP70-1 | HSP70-1A | HSP70I | HSP72 | HSPA1 | HSPA1B | heat shock 70kDa protein 1A | Affinity Capture-Western | BioGRID | 1540595 |
IDE | FLJ35968 | INSULYSIN | insulin-degrading enzyme | - | HPRD | 8051160 |
IL6ST | CD130 | CDw130 | GP130 | GP130-RAPS | IL6R-beta | interleukin 6 signal transducer (gp130, oncostatin M receptor) | Affinity Capture-Western | BioGRID | 15129430 |
JUN | AP-1 | AP1 | c-Jun | jun oncogene | - | HPRD,BioGRID | 8798722 |9211894 |
KAT5 | ESA1 | HTATIP | HTATIP1 | PLIP | TIP | TIP60 | cPLA2 | K(lysine) acetyltransferase 5 | Biochemical Activity Two-hybrid | BioGRID | 11994312 |
KAT5 | ESA1 | HTATIP | HTATIP1 | PLIP | TIP | TIP60 | cPLA2 | K(lysine) acetyltransferase 5 | - | HPRD | 10364196 |
KLK2 | KLK2A2 | MGC12201 | hK2 | kallikrein-related peptidase 2 | AR interacts with p-KLK-2. | BIND | 15542435 |
KLK3 | APS | KLK2A1 | PSA | hK3 | kallikrein-related peptidase 3 | AR interacts with p-PSA. | BIND | 15542435 |
MAGEA11 | MAGE-11 | MAGE11 | MAGEA-11 | MGC10511 | melanoma antigen family A, 11 | Affinity Capture-Western Co-localization Reconstituted Complex Two-hybrid | BioGRID | 15684378 |
MAPK1 | ERK | ERK2 | ERT1 | MAPK2 | P42MAPK | PRKM1 | PRKM2 | p38 | p40 | p41 | p41mapk | mitogen-activated protein kinase 1 | Reconstituted Complex | BioGRID | 10318905 |
MDM2 | HDMX | MGC71221 | hdm2 | Mdm2 p53 binding protein homolog (mouse) | - | HPRD | 12145204 |
MED1 | CRSP1 | CRSP200 | DRIP205 | DRIP230 | MGC71488 | PBP | PPARBP | PPARGBP | RB18A | TRAP220 | TRIP2 | mediator complex subunit 1 | - | HPRD,BioGRID | 12218053 |
MED14 | CRSP150 | CRSP2 | CSRP | CXorf4 | DRIP150 | EXLM1 | MGC104513 | RGR1 | TRAP170 | mediator complex subunit 14 | - | HPRD,BioGRID | 12218053 |
MYBBP1A | FLJ37886 | P160 | PAP2 | MYB binding protein (P160) 1a | - | HPRD | 11779876 |
MYST2 | HBO1 | HBOA | KAT7 | MYST histone acetyltransferase 2 | - | HPRD,BioGRID | 10930412 |
NCOA1 | F-SRC-1 | KAT13A | MGC129719 | MGC129720 | NCoA-1 | RIP160 | SRC-1 | SRC1 | bHLHe42 | nuclear receptor coactivator 1 | SRC-1a interacts with AR. | BIND | 10454563 |
NCOA1 | F-SRC-1 | KAT13A | MGC129719 | MGC129720 | NCoA-1 | RIP160 | SRC-1 | SRC1 | bHLHe42 | nuclear receptor coactivator 1 | - | HPRD,BioGRID | 10567563 |
NCOA1 | F-SRC-1 | KAT13A | MGC129719 | MGC129720 | NCoA-1 | RIP160 | SRC-1 | SRC1 | bHLHe42 | nuclear receptor coactivator 1 | SRC-1e interacts with AR. | BIND | 10454563 |
NCOA2 | GRIP1 | KAT13C | MGC138808 | NCoA-2 | TIF2 | nuclear receptor coactivator 2 | Affinity Capture-Western Protein-peptide Reconstituted Complex Two-hybrid | BioGRID | 12612084 |12810069 |14593076 |14966121 |
NCOA2 | GRIP1 | KAT13C | MGC138808 | NCoA-2 | TIF2 | nuclear receptor coactivator 2 | GRIP1 interacts with AR. This interaction was modeled on a demonstrated interaction between mouse GRIP1 and human AR. | BIND | 10454563 |
NCOA2 | GRIP1 | KAT13C | MGC138808 | NCoA-2 | TIF2 | nuclear receptor coactivator 2 | - | HPRD | 9717843 |
NCOA2 | GRIP1 | KAT13C | MGC138808 | NCoA-2 | TIF2 | nuclear receptor coactivator 2 | - | HPRD | 9717843 |12588987 |
NCOA3 | ACTR | AIB-1 | AIB1 | CAGH16 | CTG26 | KAT13B | MGC141848 | RAC3 | SRC3 | TNRC14 | TNRC16 | TRAM-1 | pCIP | nuclear receptor coactivator 3 | - | HPRD,BioGRID | 10965917 |
NCOA4 | ARA70 | DKFZp762E1112 | ELE1 | PTC3 | RFG | nuclear receptor coactivator 4 | - | HPRD | 8643607 |9892017 |10517667 |11818501 |
NCOA4 | ARA70 | DKFZp762E1112 | ELE1 | PTC3 | RFG | nuclear receptor coactivator 4 | Far Western Protein-peptide Reconstituted Complex Two-hybrid | BioGRID | 8643607 |9636157 |9892017 |10318905 |10517667 |11404460 |11779876 |11818501 |12612084 |14966297 |
NCOA6 | AIB3 | ANTP | ASC2 | HOX1.1 | HOXA7 | KIAA0181 | NRC | PRIP | RAP250 | TRBP | nuclear receptor coactivator 6 | Affinity Capture-Western Two-hybrid | BioGRID | 14645241 |
NCOR1 | KIAA1047 | MGC104216 | N-CoR | TRAC1 | hCIT529I10 | hN-CoR | nuclear receptor co-repressor 1 | - | HPRD,BioGRID | 12089345 |
NCOR2 | CTG26 | SMRT | SMRTE | SMRTE-tau | TNRC14 | TRAC-1 | TRAC1 | nuclear receptor co-repressor 2 | Affinity Capture-Western Co-localization Reconstituted Complex Two-hybrid | BioGRID | 11923464 |12441355 |14593076 |
NFKB1 | DKFZp686C01211 | EBP-1 | KBF1 | MGC54151 | NF-kappa-B | NFKB-p105 | NFKB-p50 | p105 | nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 | - | HPRD | 8798655 |
NISCH | FLJ14425 | FLJ40413 | FLJ90519 | I-1 | IRAS | KIAA0975 | nischarin | - | HPRD,BioGRID | 15028622 |
NONO | NMT55 | NRB54 | P54 | P54NRB | non-POU domain containing, octamer-binding | - | HPRD,BioGRID | 12810069 |
NR0B1 | AHC | AHCH | AHX | DAX-1 | DAX1 | DSS | GTD | HHG | NROB1 | nuclear receptor subfamily 0, group B, member 1 | - | HPRD,BioGRID | 11875111 |
NR0B2 | FLJ17090 | SHP | SHP1 | nuclear receptor subfamily 0, group B, member 2 | - | HPRD,BioGRID | 11735420 |
NR2C1 | TR2 | nuclear receptor subfamily 2, group C, member 1 | - | HPRD,BioGRID | 12949936 |
NR2C2 | TAK1 | TR2R1 | TR4 | hTAK1 | nuclear receptor subfamily 2, group C, member 2 | - | HPRD,BioGRID | 10611280 |
NR3C1 | GCCR | GCR | GR | GRL | nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) | - | HPRD,BioGRID | 9162033 |
NSD1 | ARA267 | DKFZp666C163 | FLJ10684 | FLJ22263 | FLJ44628 | KMT3B | SOTOS | STO | nuclear receptor binding SET domain protein 1 | - | HPRD | 11509567 |
NSD1 | ARA267 | DKFZp666C163 | FLJ10684 | FLJ22263 | FLJ44628 | KMT3B | SOTOS | STO | nuclear receptor binding SET domain protein 1 | - | HPRD,BioGRID | 11266437|11509567 |
PA2G4 | EBP1 | HG4-1 | p38-2G4 | proliferation-associated 2G4, 38kDa | Affinity Capture-Western Reconstituted Complex | BioGRID | 12165860 |
PA2G4 | EBP1 | HG4-1 | p38-2G4 | proliferation-associated 2G4, 38kDa | - | HPRD | 9565586 |
PAK6 | PAK5 | p21 protein (Cdc42/Rac)-activated kinase 6 | - | HPRD,BioGRID | 11278661 |
PATZ1 | MAZR | PATZ | RIAZ | ZBTB19 | ZNF278 | ZSG | dJ400N23 | POZ (BTB) and AT hook containing zinc finger 1 | Affinity Capture-Western | BioGRID | 11719514 |
PELP1 | HMX3 | MNAR | P160 | proline, glutamate and leucine rich protein 1 | - | HPRD,BioGRID | 12415108 |
PIAS1 | DDXBP1 | GBP | GU/RH-II | MGC141878 | MGC141879 | ZMIZ3 | protein inhibitor of activated STAT, 1 | - | HPRD | 11877418 |
PIAS1 | DDXBP1 | GBP | GU/RH-II | MGC141878 | MGC141879 | ZMIZ3 | protein inhibitor of activated STAT, 1 | Two-hybrid | BioGRID | 11117529 |
PIAS2 | MGC102682 | MIZ1 | PIASX | PIASX-ALPHA | PIASX-BETA | SIZ2 | ZMIZ4 | miz | protein inhibitor of activated STAT, 2 | Reconstituted Complex Two-hybrid | BioGRID | 9920921 |11117529 |
PIAS3 | FLJ14651 | ZMIZ5 | protein inhibitor of activated STAT, 3 | Two-hybrid | BioGRID | 11117529 |
PIAS4 | FLJ12419 | MGC35296 | PIASY | Piasg | ZMIZ6 | protein inhibitor of activated STAT, 4 | - | HPRD,BioGRID | 11439351 |
PNRC1 | B4-2 | PNAS-145 | PROL2 | PRR2 | RP11-63L7.5 | proline-rich nuclear receptor coactivator 1 | - | HPRD | 10428808 |
PNRC2 | FLJ20312 | MGC99541 | proline-rich nuclear receptor coactivator 2 | - | HPRD | 10894149 |
POU2F1 | OCT1 | OTF1 | POU class 2 homeobox 1 | - | HPRD,BioGRID | 10480874 |
POU2F2 | OCT2 | OTF2 | Oct-2 | POU class 2 homeobox 2 | Reconstituted Complex | BioGRID | 10480874 |
PRKDC | DNA-PKcs | DNAPK | DNPK1 | HYRC | HYRC1 | XRCC7 | p350 | protein kinase, DNA-activated, catalytic polypeptide | Affinity Capture-MS | BioGRID | 15640154 |
PRMT1 | ANM1 | HCP1 | HRMT1L2 | IR1B4 | protein arginine methyltransferase 1 | Reconstituted Complex | BioGRID | 11050077 |
PRPF6 | ANT-1 | C20orf14 | TOM | U5-102K | hPrp6 | PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae) | - | HPRD,BioGRID | 12039962 |
PSPC1 | DKFZp566B1447 | FLJ10955 | PSP1 | paraspeckle component 1 | Affinity Capture-MS | BioGRID | 12810069 |
PTEN | 10q23del | BZS | MGC11227 | MHAM | MMAC1 | PTEN1 | TEP1 | phosphatase and tensin homolog | Affinity Capture-Western Reconstituted Complex | BioGRID | 15205473 |
RAC3 | - | ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3) | - | HPRD | 11747336 |
RAD9A | RAD9 | RAD9 homolog A (S. pombe) | Two-hybrid | BioGRID | 14966297 |
RAF1 | CRAF | NS5 | Raf-1 | c-Raf | v-raf-1 murine leukemia viral oncogene homolog 1 | - | HPRD,BioGRID | 8349631 |
RAN | ARA24 | Gsp1 | TC4 | RAN, member RAS oncogene family | - | HPRD,BioGRID | 10400640 |
RANBP9 | RANBPM | RAN binding protein 9 | - | HPRD,BioGRID | 12361945 |
RB1 | OSRC | RB | p105-Rb | pRb | pp110 | retinoblastoma 1 | Rb interacts with AR. | BIND | 9675141 |
RB1 | OSRC | RB | p105-Rb | pRb | pp110 | retinoblastoma 1 | - | HPRD,BioGRID | 9675141 |
RCHY1 | ARNIP | CHIMP | DKFZp586C1620 | PIRH2 | PRO1996 | RNF199 | ZNF363 | hARNIP | ring finger and CHY zinc finger domain containing 1 | - | HPRD,BioGRID | 12200228 |
RELA | MGC131774 | NFKB3 | p65 | v-rel reticuloendotheliosis viral oncogene homolog A (avian) | - | HPRD | 8798655 |
RNF14 | ARA54 | FLJ26004 | HFB30 | HRIHFB2038 | TRIAD2 | ring finger protein 14 | - | HPRD,BioGRID | 10085091 |
RNF4 | RES4-26 | SNURF | ring finger protein 4 | - | HPRD,BioGRID | 9710597 |10617653 |11719514 |
SART3 | DSAP1 | KIAA0156 | MGC138188 | P100 | RP11-13G14 | TIP110 | p110 | p110(nrb) | squamous cell carcinoma antigen recognized by T cells 3 | - | HPRD,BioGRID | 15031286 |
SELENBP1 | FLJ13813 | LPSB | SP56 | hSBP | hSP56 | selenium binding protein 1 | Affinity Capture-Western | BioGRID | 1540595 |
SLC25A4 | AAC1 | ANT | ANT1 | PEO2 | PEO3 | T1 | solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 | - | HPRD | 12039962 |
SMAD3 | DKFZp586N0721 | DKFZp686J10186 | HSPC193 | HsT17436 | JV15-2 | MADH3 | MGC60396 | SMAD family member 3 | - | HPRD,BioGRID | 11280774 |
SMAD4 | DPC4 | JIP | MADH4 | SMAD family member 4 | - | HPRD,BioGRID | 12226080 |
SMARCA4 | BAF190 | BRG1 | FLJ39786 | SNF2 | SNF2-BETA | SNF2L4 | SNF2LB | SWI2 | hSNF2b | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 | Affinity Capture-Western | BioGRID | 14966121 |
SMARCC1 | BAF155 | CRACC1 | Rsc8 | SRG3 | SWI3 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 | Affinity Capture-Western | BioGRID | 14966121 |
SP1 | - | Sp1 transcription factor | Affinity Capture-Western | BioGRID | 15661808 |
SPDEF | PDEF | RP11-375E1__A.3 | bA375E1.3 | SAM pointed domain containing ets transcription factor | - | HPRD,BioGRID | 10625666 |
SRC | ASV | SRC1 | c-SRC | p60-Src | v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian) | Affinity Capture-Western Two-hybrid | BioGRID | 11032808 |15027889 |15466214 |
SRY | TDF | TDY | sex determining region Y | - | HPRD,BioGRID | 11585838 |
STAT3 | APRF | FLJ20882 | HIES | MGC16063 | signal transducer and activator of transcription 3 (acute-phase response factor) | - | HPRD,BioGRID | 11751884 |
SVIL | DKFZp686A17191 | supervillin | - | HPRD,BioGRID | 11792840 |
TBP | GTF2D | GTF2D1 | MGC117320 | MGC126054 | MGC126055 | SCA17 | TFIID | TATA box binding protein | Reconstituted Complex | BioGRID | 9238003 |
TCF4 | E2-2 | ITF2 | MGC149723 | MGC149724 | PTHS | SEF2 | SEF2-1 | SEF2-1A | SEF2-1B | bHLHb19 | transcription factor 4 | - | HPRD,BioGRID | 12799378 |
TDG | - | thymine-DNA glycosylase | Reconstituted Complex | BioGRID | 12874288 |
TGFB1I1 | ARA55 | HIC-5 | HIC5 | TSC-5 | transforming growth factor beta 1 induced transcript 1 | - | HPRD | 11155740 |
TGFB1I1 | ARA55 | HIC-5 | HIC5 | TSC-5 | transforming growth factor beta 1 induced transcript 1 | The carboxy terminus of ARA55 interacts with the carboxy terminus AR to enhance transcriptional activity. | BIND | 10075738 |
TGFB1I1 | ARA55 | HIC-5 | HIC5 | TSC-5 | transforming growth factor beta 1 induced transcript 1 | Affinity Capture-Western Protein-peptide Reconstituted Complex Two-hybrid | BioGRID | 11779876 |11856738 |
TMF1 | ARA160 | TATA element modulatory factor 1 | Far Western Reconstituted Complex Two-hybrid | BioGRID | 10428808 |
TMF1 | ARA160 | TATA element modulatory factor 1 | - | HPRD | 12165860 |
TP53 | FLJ92943 | LFS1 | TRP53 | p53 | tumor protein p53 | Biochemical Activity Phenotypic Suppression | BioGRID | 11504717 |
TRIM24 | PTC6 | RNF82 | TF1A | TIF1 | TIF1A | TIF1ALPHA | hTIF1 | tripartite motif-containing 24 | - | HPRD,BioGRID | 9115274 |
TSG101 | TSG10 | VPS23 | tumor susceptibility gene 101 | - | HPRD,BioGRID | 10508170 |
UBE2I | C358B7.1 | P18 | UBC9 | ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) | Affinity Capture-Western Phenotypic Enhancement Two-hybrid | BioGRID | 10383460 |
UBE2I | C358B7.1 | P18 | UBC9 | ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) | - | HPRD | 8798622 |
UXT | ART-27 | ubiquitously-expressed transcript | - | HPRD,BioGRID | 11854421 |
XRCC5 | FLJ39089 | KARP-1 | KARP1 | KU80 | KUB2 | Ku86 | NFIV | X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining) | Reconstituted Complex | BioGRID | 15640154 |
XRCC6 | CTC75 | CTCBF | G22P1 | KU70 | ML8 | TLAA | X-ray repair complementing defective repair in Chinese hamster cells 6 | Affinity Capture-Western | BioGRID | 15640154 |
YWHAQ | 14-3-3 | 1C5 | HS1 | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide | Reconstituted Complex | BioGRID | 11266503 |
ZMIZ1 | FLJ13541 | KIAA1224 | MIZ | RAI17 | Zimp10 | hZIMP10 | zinc finger, MIZ-type containing 1 | - | HPRD,BioGRID | 14609956 |
Section V. Pathway annotation
Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
---|---|---|---|
KEGG OOCYTE MEIOSIS | 114 | 79 | All SZGR 2.0 genes in this pathway |
KEGG PATHWAYS IN CANCER | 328 | 259 | All SZGR 2.0 genes in this pathway |
KEGG PROSTATE CANCER | 89 | 75 | All SZGR 2.0 genes in this pathway |
ST ADRENERGIC | 36 | 29 | All SZGR 2.0 genes in this pathway |
PID SMAD2 3NUCLEAR PATHWAY | 82 | 63 | All SZGR 2.0 genes in this pathway |
PID AR PATHWAY | 61 | 46 | All SZGR 2.0 genes in this pathway |
PID AR TF PATHWAY | 53 | 38 | All SZGR 2.0 genes in this pathway |
PID AR NONGENOMIC PATHWAY | 31 | 27 | All SZGR 2.0 genes in this pathway |
PID BETA CATENIN NUC PATHWAY | 80 | 60 | All SZGR 2.0 genes in this pathway |
PID HNF3A PATHWAY | 44 | 29 | All SZGR 2.0 genes in this pathway |
PID HES HEY PATHWAY | 48 | 39 | All SZGR 2.0 genes in this pathway |
REACTOME GENERIC TRANSCRIPTION PATHWAY | 352 | 181 | All SZGR 2.0 genes in this pathway |
REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | 49 | 36 | All SZGR 2.0 genes in this pathway |
CHEMNITZ RESPONSE TO PROSTAGLANDIN E2 DN | 391 | 222 | All SZGR 2.0 genes in this pathway |
CHANDRAN METASTASIS TOP50 UP | 38 | 27 | All SZGR 2.0 genes in this pathway |
CHARAFE BREAST CANCER LUMINAL VS BASAL UP | 380 | 215 | All SZGR 2.0 genes in this pathway |
DOANE BREAST CANCER CLASSES UP | 72 | 38 | All SZGR 2.0 genes in this pathway |
DOANE BREAST CANCER ESR1 UP | 112 | 72 | All SZGR 2.0 genes in this pathway |
RODRIGUES THYROID CARCINOMA POORLY DIFFERENTIATED DN | 805 | 505 | All SZGR 2.0 genes in this pathway |
GOZGIT ESR1 TARGETS DN | 781 | 465 | All SZGR 2.0 genes in this pathway |
ENK UV RESPONSE EPIDERMIS UP | 293 | 179 | All SZGR 2.0 genes in this pathway |
CHEBOTAEV GR TARGETS DN | 120 | 73 | All SZGR 2.0 genes in this pathway |
OUELLET CULTURED OVARIAN CANCER INVASIVE VS LMP DN | 35 | 20 | All SZGR 2.0 genes in this pathway |
RIZ ERYTHROID DIFFERENTIATION 12HR | 43 | 35 | All SZGR 2.0 genes in this pathway |
RASHI RESPONSE TO IONIZING RADIATION 3 | 48 | 31 | All SZGR 2.0 genes in this pathway |
FARMER BREAST CANCER APOCRINE VS LUMINAL | 326 | 213 | All SZGR 2.0 genes in this pathway |
FARMER BREAST CANCER APOCRINE VS BASAL | 330 | 217 | All SZGR 2.0 genes in this pathway |
FARMER BREAST CANCER BASAL VS LULMINAL | 330 | 215 | All SZGR 2.0 genes in this pathway |
FARMER BREAST CANCER CLUSTER 7 | 20 | 11 | All SZGR 2.0 genes in this pathway |
LIEN BREAST CARCINOMA METAPLASTIC VS DUCTAL DN | 114 | 58 | All SZGR 2.0 genes in this pathway |
MOHANKUMAR TLX1 TARGETS UP | 414 | 287 | All SZGR 2.0 genes in this pathway |
YANG BREAST CANCER ESR1 LASER UP | 34 | 25 | All SZGR 2.0 genes in this pathway |
PUJANA BREAST CANCER LIT INT NETWORK | 101 | 73 | All SZGR 2.0 genes in this pathway |
KHETCHOUMIAN TRIM24 TARGETS DN | 8 | 7 | All SZGR 2.0 genes in this pathway |
SCHAEFFER PROSTATE DEVELOPMENT 48HR DN | 428 | 306 | All SZGR 2.0 genes in this pathway |
CHANG IMMORTALIZED BY HPV31 DN | 65 | 45 | All SZGR 2.0 genes in this pathway |
KAYO AGING MUSCLE UP | 244 | 165 | All SZGR 2.0 genes in this pathway |
BROWNE HCMV INFECTION 48HR DN | 504 | 323 | All SZGR 2.0 genes in this pathway |
ZHU CMV 8 HR DN | 53 | 40 | All SZGR 2.0 genes in this pathway |
ZHU CMV ALL DN | 128 | 93 | All SZGR 2.0 genes in this pathway |
CUI TCF21 TARGETS 2 UP | 428 | 266 | All SZGR 2.0 genes in this pathway |
MAHAJAN RESPONSE TO IL1A UP | 81 | 52 | All SZGR 2.0 genes in this pathway |
HOWLIN CITED1 TARGETS 1 DN | 37 | 22 | All SZGR 2.0 genes in this pathway |
LEIN MEDULLA MARKERS | 81 | 48 | All SZGR 2.0 genes in this pathway |
GAVIN FOXP3 TARGETS CLUSTER P6 | 91 | 44 | All SZGR 2.0 genes in this pathway |
MASSARWEH TAMOXIFEN RESISTANCE UP | 578 | 341 | All SZGR 2.0 genes in this pathway |
OUYANG PROSTATE CANCER MARKERS | 19 | 16 | All SZGR 2.0 genes in this pathway |
SMID BREAST CANCER RELAPSE IN BRAIN DN | 85 | 58 | All SZGR 2.0 genes in this pathway |
SMID BREAST CANCER ERBB2 UP | 147 | 83 | All SZGR 2.0 genes in this pathway |
SMID BREAST CANCER BASAL DN | 701 | 446 | All SZGR 2.0 genes in this pathway |
IZADPANAH STEM CELL ADIPOSE VS BONE DN | 108 | 68 | All SZGR 2.0 genes in this pathway |
MATZUK MALE REPRODUCTION SERTOLI | 28 | 23 | All SZGR 2.0 genes in this pathway |
LEE LIVER CANCER SURVIVAL UP | 185 | 112 | All SZGR 2.0 genes in this pathway |
CHIANG LIVER CANCER SUBCLASS CTNNB1 UP | 176 | 110 | All SZGR 2.0 genes in this pathway |
CHIANG LIVER CANCER SUBCLASS PROLIFERATION DN | 179 | 97 | All SZGR 2.0 genes in this pathway |
HOSHIDA LIVER CANCER SURVIVAL DN | 113 | 76 | All SZGR 2.0 genes in this pathway |
YAGI AML WITH INV 16 TRANSLOCATION | 422 | 277 | All SZGR 2.0 genes in this pathway |
LI PROSTATE CANCER EPIGENETIC | 30 | 22 | All SZGR 2.0 genes in this pathway |
CAIRO HEPATOBLASTOMA CLASSES DN | 210 | 141 | All SZGR 2.0 genes in this pathway |
CHANDRAN METASTASIS UP | 221 | 135 | All SZGR 2.0 genes in this pathway |
PANGAS TUMOR SUPPRESSION BY SMAD1 AND SMAD5 UP | 134 | 85 | All SZGR 2.0 genes in this pathway |
SUBTIL PROGESTIN TARGETS | 36 | 25 | All SZGR 2.0 genes in this pathway |
CHANGOLKAR H2AFY TARGETS DN | 40 | 26 | All SZGR 2.0 genes in this pathway |
LEE BMP2 TARGETS UP | 745 | 475 | All SZGR 2.0 genes in this pathway |
WANG MLL TARGETS | 289 | 188 | All SZGR 2.0 genes in this pathway |
ZWANG TRANSIENTLY UP BY 1ST EGF PULSE ONLY | 1839 | 928 | All SZGR 2.0 genes in this pathway |
ZWANG EGF INTERVAL DN | 214 | 124 | All SZGR 2.0 genes in this pathway |
Section VI. microRNA annotation
miRNA family | Target position | miRNA ID | miRNA seq | ||
---|---|---|---|---|---|
UTR start | UTR end | Match method | |||
miR-130/301 | 71 | 77 | 1A | hsa-miR-130abrain | CAGUGCAAUGUUAAAAGGGCAU |
hsa-miR-301 | CAGUGCAAUAGUAUUGUCAAAGC | ||||
hsa-miR-130bbrain | CAGUGCAAUGAUGAAAGGGCAU | ||||
hsa-miR-454-3p | UAGUGCAAUAUUGCUUAUAGGGUUU | ||||
miR-493-5p | 113 | 119 | m8 | hsa-miR-493-5p | UUGUACAUGGUAGGCUUUCAUU |
- SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
- Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.