Gene Page: TEX9
Summary ?
| GeneID | 374618 |
| Symbol | TEX9 |
| Synonyms | - |
| Description | testis expressed 9 |
| Reference | HGNC:HGNC:29585|Ensembl:ENSG00000151575|HPRD:15493|Vega:OTTHUMG00000132035 |
| Gene type | protein-coding |
| Map location | 15q21.3 |
| Pascal p-value | 0.053 |
| Fetal beta | 1.069 |
| DMG | 1 (# studies) |
| eGene | Cortex Putamen basal ganglia |
| Support | G2Cdb.humanPSD G2Cdb.humanPSP |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:PGCnp | Genome-wide Association Study | GWAS | |
| DMG:Jaffe_2016 | Genome-wide DNA methylation analysis | This dataset includes 2,104 probes/CpGs associated with SZ patients (n=108) compared to 136 controls at Bonferroni-adjusted P < 0.05. | 1 |
Section I. Genetics and epigenetics annotation
Differentially methylated gene
| Probe | Chromosome | Position | Nearest gene | P (dis) | Beta (dis) | FDR (dis) | Study |
|---|---|---|---|---|---|---|---|
| cg17146150 | 15 | 56657437 | TEX9 | 9.22E-8 | -0.013 | 2.1E-5 | DMG:Jaffe_2016 |
eQTL annotation
| SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
|---|---|---|---|---|---|---|---|---|
| rs11630710 | 15 | 56364758 | TEX9 | ENSG00000151575.10 | 1.616E-6 | 0.01 | -171449 | gtex_brain_putamen_basal |
| rs1553737 | 15 | 56370492 | TEX9 | ENSG00000151575.10 | 1.657E-6 | 0.01 | -165715 | gtex_brain_putamen_basal |
| rs1553738 | 15 | 56370951 | TEX9 | ENSG00000151575.10 | 1.873E-6 | 0.01 | -165256 | gtex_brain_putamen_basal |
| rs7175969 | 15 | 56371998 | TEX9 | ENSG00000151575.10 | 2.974E-7 | 0.01 | -164209 | gtex_brain_putamen_basal |
| rs72736464 | 15 | 56372722 | TEX9 | ENSG00000151575.10 | 2.322E-6 | 0.01 | -163485 | gtex_brain_putamen_basal |
| rs72736465 | 15 | 56372846 | TEX9 | ENSG00000151575.10 | 1.886E-6 | 0.01 | -163361 | gtex_brain_putamen_basal |
| rs58036957 | 15 | 56373056 | TEX9 | ENSG00000151575.10 | 1.954E-6 | 0.01 | -163151 | gtex_brain_putamen_basal |
| rs55946012 | 15 | 56374899 | TEX9 | ENSG00000151575.10 | 1.968E-6 | 0.01 | -161308 | gtex_brain_putamen_basal |
| rs66670902 | 15 | 56375132 | TEX9 | ENSG00000151575.10 | 1.969E-6 | 0.01 | -161075 | gtex_brain_putamen_basal |
| rs12592690 | 15 | 56375442 | TEX9 | ENSG00000151575.10 | 1.958E-6 | 0.01 | -160765 | gtex_brain_putamen_basal |
| rs58509950 | 15 | 56375880 | TEX9 | ENSG00000151575.10 | 3.129E-6 | 0.01 | -160327 | gtex_brain_putamen_basal |
| rs34907422 | 15 | 56376020 | TEX9 | ENSG00000151575.10 | 1.974E-6 | 0.01 | -160187 | gtex_brain_putamen_basal |
| rs61072507 | 15 | 56376594 | TEX9 | ENSG00000151575.10 | 3.295E-6 | 0.01 | -159613 | gtex_brain_putamen_basal |
| rs68187092 | 15 | 56380718 | TEX9 | ENSG00000151575.10 | 1.982E-6 | 0.01 | -155489 | gtex_brain_putamen_basal |
| rs3803459 | 15 | 56387859 | TEX9 | ENSG00000151575.10 | 2.107E-6 | 0.01 | -148348 | gtex_brain_putamen_basal |
| rs4142481 | 15 | 56392275 | TEX9 | ENSG00000151575.10 | 2.174E-6 | 0.01 | -143932 | gtex_brain_putamen_basal |
| rs61373424 | 15 | 56393235 | TEX9 | ENSG00000151575.10 | 2.107E-6 | 0.01 | -142972 | gtex_brain_putamen_basal |
| rs17238607 | 15 | 56396132 | TEX9 | ENSG00000151575.10 | 1.805E-6 | 0.01 | -140075 | gtex_brain_putamen_basal |
| rs72736479 | 15 | 56398952 | TEX9 | ENSG00000151575.10 | 2.107E-6 | 0.01 | -137255 | gtex_brain_putamen_basal |
| rs61500930 | 15 | 56399538 | TEX9 | ENSG00000151575.10 | 1.847E-6 | 0.01 | -136669 | gtex_brain_putamen_basal |
| rs139161093 | 15 | 56400338 | TEX9 | ENSG00000151575.10 | 2.107E-6 | 0.01 | -135869 | gtex_brain_putamen_basal |
| rs34383693 | 15 | 56401306 | TEX9 | ENSG00000151575.10 | 1.515E-6 | 0.01 | -134901 | gtex_brain_putamen_basal |
| rs76347629 | 15 | 56404221 | TEX9 | ENSG00000151575.10 | 3.277E-6 | 0.01 | -131986 | gtex_brain_putamen_basal |
| rs11633911 | 15 | 56405467 | TEX9 | ENSG00000151575.10 | 1.805E-6 | 0.01 | -130740 | gtex_brain_putamen_basal |
| rs12443118 | 15 | 56406027 | TEX9 | ENSG00000151575.10 | 2.107E-6 | 0.01 | -130180 | gtex_brain_putamen_basal |
| rs72736484 | 15 | 56408168 | TEX9 | ENSG00000151575.10 | 1.803E-6 | 0.01 | -128039 | gtex_brain_putamen_basal |
| rs59025920 | 15 | 56409172 | TEX9 | ENSG00000151575.10 | 2.532E-6 | 0.01 | -127035 | gtex_brain_putamen_basal |
| rs72736495 | 15 | 56410911 | TEX9 | ENSG00000151575.10 | 2.532E-6 | 0.01 | -125296 | gtex_brain_putamen_basal |
| rs116140504 | 15 | 56410918 | TEX9 | ENSG00000151575.10 | 1.803E-6 | 0.01 | -125289 | gtex_brain_putamen_basal |
| rs11634404 | 15 | 56413388 | TEX9 | ENSG00000151575.10 | 2.532E-6 | 0.01 | -122819 | gtex_brain_putamen_basal |
| rs143140026 | 15 | 56416620 | TEX9 | ENSG00000151575.10 | 8.223E-7 | 0.01 | -119587 | gtex_brain_putamen_basal |
| rs12595072 | 15 | 56418771 | TEX9 | ENSG00000151575.10 | 2.576E-6 | 0.01 | -117436 | gtex_brain_putamen_basal |
| rs72736498 | 15 | 56420710 | TEX9 | ENSG00000151575.10 | 2.528E-6 | 0.01 | -115497 | gtex_brain_putamen_basal |
| rs76351234 | 15 | 56422623 | TEX9 | ENSG00000151575.10 | 2.48E-6 | 0.01 | -113584 | gtex_brain_putamen_basal |
| rs72736501 | 15 | 56423061 | TEX9 | ENSG00000151575.10 | 1.805E-6 | 0.01 | -113146 | gtex_brain_putamen_basal |
| rs149061934 | 15 | 56423732 | TEX9 | ENSG00000151575.10 | 2.505E-6 | 0.01 | -112475 | gtex_brain_putamen_basal |
| rs72738604 | 15 | 56425189 | TEX9 | ENSG00000151575.10 | 2.469E-6 | 0.01 | -111018 | gtex_brain_putamen_basal |
| rs72738605 | 15 | 56425335 | TEX9 | ENSG00000151575.10 | 2.474E-6 | 0.01 | -110872 | gtex_brain_putamen_basal |
| rs72738607 | 15 | 56425615 | TEX9 | ENSG00000151575.10 | 2.469E-6 | 0.01 | -110592 | gtex_brain_putamen_basal |
| rs72738608 | 15 | 56425746 | TEX9 | ENSG00000151575.10 | 2.495E-6 | 0.01 | -110461 | gtex_brain_putamen_basal |
| rs181139921 | 15 | 56426852 | TEX9 | ENSG00000151575.10 | 2.648E-6 | 0.01 | -109355 | gtex_brain_putamen_basal |
| rs1550586 | 15 | 56434956 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -101251 | gtex_brain_putamen_basal |
| rs1867089 | 15 | 56436240 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -99967 | gtex_brain_putamen_basal |
| rs11636040 | 15 | 56439202 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -97005 | gtex_brain_putamen_basal |
| rs11631518 | 15 | 56441360 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -94847 | gtex_brain_putamen_basal |
| rs12594103 | 15 | 56444381 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -91826 | gtex_brain_putamen_basal |
| rs79941117 | 15 | 56444901 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -91306 | gtex_brain_putamen_basal |
| rs202222182 | 15 | 56444978 | TEX9 | ENSG00000151575.10 | 3.06E-6 | 0.01 | -91229 | gtex_brain_putamen_basal |
| rs58084889 | 15 | 56446120 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -90087 | gtex_brain_putamen_basal |
| rs72738615 | 15 | 56449456 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -86751 | gtex_brain_putamen_basal |
| rs72738616 | 15 | 56451242 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -84965 | gtex_brain_putamen_basal |
| rs72738618 | 15 | 56451415 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -84792 | gtex_brain_putamen_basal |
| rs764014 | 15 | 56454223 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -81984 | gtex_brain_putamen_basal |
| rs72738620 | 15 | 56456230 | TEX9 | ENSG00000151575.10 | 2.021E-6 | 0.01 | -79977 | gtex_brain_putamen_basal |
| rs11632023 | 15 | 56457442 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -78765 | gtex_brain_putamen_basal |
| rs77852007 | 15 | 56458692 | TEX9 | ENSG00000151575.10 | 1.606E-6 | 0.01 | -77515 | gtex_brain_putamen_basal |
| rs12595366 | 15 | 56459914 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -76293 | gtex_brain_putamen_basal |
| rs12593569 | 15 | 56460951 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -75256 | gtex_brain_putamen_basal |
| rs72523470 | 15 | 56465429 | TEX9 | ENSG00000151575.10 | 2.764E-6 | 0.01 | -70778 | gtex_brain_putamen_basal |
| rs12592130 | 15 | 56465885 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -70322 | gtex_brain_putamen_basal |
| rs72738631 | 15 | 56466615 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -69592 | gtex_brain_putamen_basal |
| rs34401800 | 15 | 56469488 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -66719 | gtex_brain_putamen_basal |
| rs11629674 | 15 | 56469583 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -66624 | gtex_brain_putamen_basal |
| rs11071253 | 15 | 56471123 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -65084 | gtex_brain_putamen_basal |
| rs75251003 | 15 | 56473040 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -63167 | gtex_brain_putamen_basal |
| rs72738636 | 15 | 56473321 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -62886 | gtex_brain_putamen_basal |
| rs72738638 | 15 | 56474085 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -62122 | gtex_brain_putamen_basal |
| rs200987961 | 15 | 56476849 | TEX9 | ENSG00000151575.10 | 2.204E-6 | 0.01 | -59358 | gtex_brain_putamen_basal |
| rs16976792 | 15 | 56477485 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -58722 | gtex_brain_putamen_basal |
| rs61270078 | 15 | 56478983 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -57224 | gtex_brain_putamen_basal |
| rs10518839 | 15 | 56484363 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -51844 | gtex_brain_putamen_basal |
| rs1879349 | 15 | 56485061 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -51146 | gtex_brain_putamen_basal |
| rs56156930 | 15 | 56485411 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -50796 | gtex_brain_putamen_basal |
| rs12593752 | 15 | 56485967 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -50240 | gtex_brain_putamen_basal |
| rs17841131 | 15 | 56487683 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -48524 | gtex_brain_putamen_basal |
| rs16976801 | 15 | 56487811 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -48396 | gtex_brain_putamen_basal |
| rs1879344 | 15 | 56488827 | TEX9 | ENSG00000151575.10 | 1.981E-6 | 0.01 | -47380 | gtex_brain_putamen_basal |
| rs1879345 | 15 | 56488934 | TEX9 | ENSG00000151575.10 | 1.981E-6 | 0.01 | -47273 | gtex_brain_putamen_basal |
| rs1879347 | 15 | 56489159 | TEX9 | ENSG00000151575.10 | 1.981E-6 | 0.01 | -47048 | gtex_brain_putamen_basal |
| rs11634455 | 15 | 56490549 | TEX9 | ENSG00000151575.10 | 1.981E-6 | 0.01 | -45658 | gtex_brain_putamen_basal |
| rs72738646 | 15 | 56490848 | TEX9 | ENSG00000151575.10 | 1.981E-6 | 0.01 | -45359 | gtex_brain_putamen_basal |
| rs16976810 | 15 | 56491665 | TEX9 | ENSG00000151575.10 | 1.981E-6 | 0.01 | -44542 | gtex_brain_putamen_basal |
| rs72738648 | 15 | 56491847 | TEX9 | ENSG00000151575.10 | 1.981E-6 | 0.01 | -44360 | gtex_brain_putamen_basal |
| rs12594860 | 15 | 56492774 | TEX9 | ENSG00000151575.10 | 1.978E-6 | 0.01 | -43433 | gtex_brain_putamen_basal |
| rs12594908 | 15 | 56493287 | TEX9 | ENSG00000151575.10 | 1.981E-6 | 0.01 | -42920 | gtex_brain_putamen_basal |
| rs11638709 | 15 | 56493724 | TEX9 | ENSG00000151575.10 | 1.981E-6 | 0.01 | -42483 | gtex_brain_putamen_basal |
| rs12595649 | 15 | 56494368 | TEX9 | ENSG00000151575.10 | 1.981E-6 | 0.01 | -41839 | gtex_brain_putamen_basal |
| rs60210425 | 15 | 56494711 | TEX9 | ENSG00000151575.10 | 1.981E-6 | 0.01 | -41496 | gtex_brain_putamen_basal |
| rs72738651 | 15 | 56494889 | TEX9 | ENSG00000151575.10 | 1.752E-6 | 0.01 | -41318 | gtex_brain_putamen_basal |
| rs10518842 | 15 | 56495136 | TEX9 | ENSG00000151575.10 | 1.981E-6 | 0.01 | -41071 | gtex_brain_putamen_basal |
| rs16976821 | 15 | 56495555 | TEX9 | ENSG00000151575.10 | 1.981E-6 | 0.01 | -40652 | gtex_brain_putamen_basal |
| rs118135259 | 15 | 56495784 | TEX9 | ENSG00000151575.10 | 1.981E-6 | 0.01 | -40423 | gtex_brain_putamen_basal |
| rs72738654 | 15 | 56496290 | TEX9 | ENSG00000151575.10 | 1.981E-6 | 0.01 | -39917 | gtex_brain_putamen_basal |
| rs10518843 | 15 | 56496525 | TEX9 | ENSG00000151575.10 | 1.981E-6 | 0.01 | -39682 | gtex_brain_putamen_basal |
| rs72738656 | 15 | 56496952 | TEX9 | ENSG00000151575.10 | 1.981E-6 | 0.01 | -39255 | gtex_brain_putamen_basal |
| rs72738658 | 15 | 56497133 | TEX9 | ENSG00000151575.10 | 1.981E-6 | 0.01 | -39074 | gtex_brain_putamen_basal |
| rs72738659 | 15 | 56497140 | TEX9 | ENSG00000151575.10 | 1.981E-6 | 0.01 | -39067 | gtex_brain_putamen_basal |
| rs72738660 | 15 | 56498700 | TEX9 | ENSG00000151575.10 | 1.981E-6 | 0.01 | -37507 | gtex_brain_putamen_basal |
| rs12591980 | 15 | 56499326 | TEX9 | ENSG00000151575.10 | 1.981E-6 | 0.01 | -36881 | gtex_brain_putamen_basal |
| rs12594245 | 15 | 56499380 | TEX9 | ENSG00000151575.10 | 1.981E-6 | 0.01 | -36827 | gtex_brain_putamen_basal |
| rs12591150 | 15 | 56499482 | TEX9 | ENSG00000151575.10 | 2.214E-6 | 0.01 | -36725 | gtex_brain_putamen_basal |
| rs12591151 | 15 | 56499483 | TEX9 | ENSG00000151575.10 | 2.214E-6 | 0.01 | -36724 | gtex_brain_putamen_basal |
| rs12591236 | 15 | 56499986 | TEX9 | ENSG00000151575.10 | 1.981E-6 | 0.01 | -36221 | gtex_brain_putamen_basal |
| rs72738662 | 15 | 56500064 | TEX9 | ENSG00000151575.10 | 1.981E-6 | 0.01 | -36143 | gtex_brain_putamen_basal |
| rs72738664 | 15 | 56500907 | TEX9 | ENSG00000151575.10 | 1.981E-6 | 0.01 | -35300 | gtex_brain_putamen_basal |
| rs72738666 | 15 | 56501019 | TEX9 | ENSG00000151575.10 | 1.981E-6 | 0.01 | -35188 | gtex_brain_putamen_basal |
| rs72738667 | 15 | 56501027 | TEX9 | ENSG00000151575.10 | 1.981E-6 | 0.01 | -35180 | gtex_brain_putamen_basal |
| rs72738668 | 15 | 56501415 | TEX9 | ENSG00000151575.10 | 1.981E-6 | 0.01 | -34792 | gtex_brain_putamen_basal |
| rs2899596 | 15 | 56502586 | TEX9 | ENSG00000151575.10 | 1.981E-6 | 0.01 | -33621 | gtex_brain_putamen_basal |
| rs2899597 | 15 | 56502930 | TEX9 | ENSG00000151575.10 | 1.981E-6 | 0.01 | -33277 | gtex_brain_putamen_basal |
| rs8030605 | 15 | 56504598 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -31609 | gtex_brain_putamen_basal |
| rs2414465 | 15 | 56505714 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -30493 | gtex_brain_putamen_basal |
| rs12595323 | 15 | 56506243 | TEX9 | ENSG00000151575.10 | 1.874E-6 | 0.01 | -29964 | gtex_brain_putamen_basal |
| rs12593096 | 15 | 56506298 | TEX9 | ENSG00000151575.10 | 2.037E-6 | 0.01 | -29909 | gtex_brain_putamen_basal |
| rs34389995 | 15 | 56506526 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -29681 | gtex_brain_putamen_basal |
| rs79679041 | 15 | 56506867 | TEX9 | ENSG00000151575.10 | 2.218E-6 | 0.01 | -29340 | gtex_brain_putamen_basal |
| rs76202595 | 15 | 56506870 | TEX9 | ENSG00000151575.10 | 2.218E-6 | 0.01 | -29337 | gtex_brain_putamen_basal |
| rs11629809 | 15 | 56507015 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -29192 | gtex_brain_putamen_basal |
| rs72738674 | 15 | 56507438 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -28769 | gtex_brain_putamen_basal |
| rs72738675 | 15 | 56507582 | TEX9 | ENSG00000151575.10 | 2.737E-6 | 0.01 | -28625 | gtex_brain_putamen_basal |
| rs79096665 | 15 | 56507616 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -28591 | gtex_brain_putamen_basal |
| rs72738676 | 15 | 56507635 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -28572 | gtex_brain_putamen_basal |
| rs75833539 | 15 | 56508104 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -28103 | gtex_brain_putamen_basal |
| rs11632619 | 15 | 56508995 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -27212 | gtex_brain_putamen_basal |
| rs75083554 | 15 | 56509082 | TEX9 | ENSG00000151575.10 | 2.455E-6 | 0.01 | -27125 | gtex_brain_putamen_basal |
| rs75192296 | 15 | 56509089 | TEX9 | ENSG00000151575.10 | 1.863E-6 | 0.01 | -27118 | gtex_brain_putamen_basal |
| rs72738680 | 15 | 56509389 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -26818 | gtex_brain_putamen_basal |
| rs10851604 | 15 | 56510059 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -26148 | gtex_brain_putamen_basal |
| rs12591093 | 15 | 56510287 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -25920 | gtex_brain_putamen_basal |
| rs75642326 | 15 | 56510417 | TEX9 | ENSG00000151575.10 | 2.182E-6 | 0.01 | -25790 | gtex_brain_putamen_basal |
| rs78768773 | 15 | 56510439 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -25768 | gtex_brain_putamen_basal |
| rs79793777 | 15 | 56510525 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -25682 | gtex_brain_putamen_basal |
| rs72738682 | 15 | 56510796 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -25411 | gtex_brain_putamen_basal |
| rs72738683 | 15 | 56510989 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -25218 | gtex_brain_putamen_basal |
| rs72738684 | 15 | 56511122 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -25085 | gtex_brain_putamen_basal |
| rs72738685 | 15 | 56511363 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -24844 | gtex_brain_putamen_basal |
| rs72738686 | 15 | 56511561 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -24646 | gtex_brain_putamen_basal |
| rs11637515 | 15 | 56511683 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -24524 | gtex_brain_putamen_basal |
| rs11632394 | 15 | 56511949 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -24258 | gtex_brain_putamen_basal |
| rs56305704 | 15 | 56512649 | TEX9 | ENSG00000151575.10 | 2.215E-6 | 0.01 | -23558 | gtex_brain_putamen_basal |
| rs56083605 | 15 | 56512949 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -23258 | gtex_brain_putamen_basal |
| rs55942364 | 15 | 56512961 | TEX9 | ENSG00000151575.10 | 1.984E-6 | 0.01 | -23246 | gtex_brain_putamen_basal |
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| rs72740506 | 15 | 56533177 | TEX9 | ENSG00000151575.10 | 2.007E-6 | 0.01 | -3030 | gtex_brain_putamen_basal |
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| rs72740514 | 15 | 56545289 | TEX9 | ENSG00000151575.10 | 2.037E-6 | 0.01 | 9082 | gtex_brain_putamen_basal |
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| rs72740579 | 15 | 56640038 | TEX9 | ENSG00000151575.10 | 1.91E-6 | 0.01 | 103831 | gtex_brain_putamen_basal |
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| rs1711483 | 15 | 56762906 | TEX9 | ENSG00000151575.10 | 1.572E-6 | 0.01 | 226699 | gtex_brain_putamen_basal |
| rs72742677 | 15 | 56765899 | TEX9 | ENSG00000151575.10 | 5.8E-7 | 0.01 | 229692 | gtex_brain_putamen_basal |
| rs77699201 | 15 | 56767730 | TEX9 | ENSG00000151575.10 | 6.859E-7 | 0.01 | 231523 | gtex_brain_putamen_basal |
| rs72742680 | 15 | 56772174 | TEX9 | ENSG00000151575.10 | 6.532E-7 | 0.01 | 235967 | gtex_brain_putamen_basal |
| rs11636793 | 15 | 56775521 | TEX9 | ENSG00000151575.10 | 6.201E-7 | 0.01 | 239314 | gtex_brain_putamen_basal |
| rs11636802 | 15 | 56775597 | TEX9 | ENSG00000151575.10 | 6.201E-7 | 0.01 | 239390 | gtex_brain_putamen_basal |
| rs142215530 | 15 | 56777691 | TEX9 | ENSG00000151575.10 | 6.732E-7 | 0.01 | 241484 | gtex_brain_putamen_basal |
| rs17238775 | 15 | 56779185 | TEX9 | ENSG00000151575.10 | 7.159E-7 | 0.01 | 242978 | gtex_brain_putamen_basal |
| rs72742684 | 15 | 56780767 | TEX9 | ENSG00000151575.10 | 7.68E-7 | 0.01 | 244560 | gtex_brain_putamen_basal |
| rs16976932 | 15 | 56781255 | TEX9 | ENSG00000151575.10 | 7.858E-7 | 0.01 | 245048 | gtex_brain_putamen_basal |
| rs72742686 | 15 | 56783550 | TEX9 | ENSG00000151575.10 | 9.639E-7 | 0.01 | 247343 | gtex_brain_putamen_basal |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression during devlopment (BrainCloud)
Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
No co-expressed genes in brain regions
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| SENGUPTA NASOPHARYNGEAL CARCINOMA DN | 349 | 157 | All SZGR 2.0 genes in this pathway |
| TAKEDA TARGETS OF NUP98 HOXA9 FUSION 10D UP | 194 | 122 | All SZGR 2.0 genes in this pathway |
| GRAESSMANN APOPTOSIS BY DOXORUBICIN UP | 1142 | 669 | All SZGR 2.0 genes in this pathway |
| DARWICHE PAPILLOMA RISK HIGH VS LOW DN | 32 | 21 | All SZGR 2.0 genes in this pathway |
| SHEPARD BMYB MORPHOLINO UP | 205 | 126 | All SZGR 2.0 genes in this pathway |
| MATSUDA NATURAL KILLER DIFFERENTIATION | 475 | 313 | All SZGR 2.0 genes in this pathway |
| CHYLA CBFA2T3 TARGETS DN | 242 | 146 | All SZGR 2.0 genes in this pathway |
| BRUINS UVC RESPONSE LATE | 1137 | 655 | All SZGR 2.0 genes in this pathway |