Summary ?
GeneID387066
SymbolSNHG5
SynonymsC6orf160|LINC00044|NCRNA00044|U50HG|bA33E24.2
Descriptionsmall nucleolar RNA host gene 5
ReferenceMIM:613263|HGNC:HGNC:21026|Ensembl:ENSG00000203875|
Gene typencRNA
Map location6q14.3
Pascal p-value1.372E-4
eGeneAnterior cingulate cortex BA24
Caudate basal ganglia
Cerebellar Hemisphere
Cerebellum
Cortex
Frontal Cortex BA9
Hippocampus
Hypothalamus
Nucleus accumbens basal ganglia
Putamen basal ganglia

Gene in Data Sources
Gene set name Method of gene setDescriptionInfo
CV:PGCnpGenome-wide Association StudyGWAS

Section I. Genetics and epigenetics annotation

@eQTL annotation

SNP IDChromosomePositioneGeneGene Entrez IDpvalueqvalueTSS distanceeQTL type
rs2181187686134059SNHG5ENSG00000203875.62.763E-60254392gtex_brain_ba24
rs9450273686137888SNHG5ENSG00000203875.68.536E-110250563gtex_brain_ba24
rs6454467686147332SNHG5ENSG00000203875.62.505E-60241119gtex_brain_ba24
rs9885944686149161SNHG5ENSG00000203875.67.372E-110239290gtex_brain_ba24
rs4288177686151908SNHG5ENSG00000203875.66.599E-100236543gtex_brain_ba24
rs12191637686153378SNHG5ENSG00000203875.62.487E-90235073gtex_brain_ba24
rs9450277686157419SNHG5ENSG00000203875.68.536E-110231032gtex_brain_ba24
rs71823414686158426SNHG5ENSG00000203875.67.818E-110230025gtex_brain_ba24
rs11752251686162868SNHG5ENSG00000203875.68.695E-110225583gtex_brain_ba24
rs7746065686174845SNHG5ENSG00000203875.68.673E-70213606gtex_brain_ba24
rs9444348686175574SNHG5ENSG00000203875.63.886E-110212877gtex_brain_ba24
rs4373337686179406SNHG5ENSG00000203875.64.396E-90209045gtex_brain_ba24
rs10944128686180732SNHG5ENSG00000203875.67.051E-140207719gtex_brain_ba24
rs10944129686180926SNHG5ENSG00000203875.67.051E-140207525gtex_brain_ba24
rs4593336686181931SNHG5ENSG00000203875.63.571E-90206520gtex_brain_ba24
rs4235826686184890SNHG5ENSG00000203875.65.175E-70203561gtex_brain_ba24
rs4707207686185343SNHG5ENSG00000203875.61.471E-60203108gtex_brain_ba24
rs6454469686186475SNHG5ENSG00000203875.65.187E-70201976gtex_brain_ba24
rs4431401686189520SNHG5ENSG00000203875.67.02E-140198931gtex_brain_ba24
rs9450282686195298SNHG5ENSG00000203875.62.795E-70193153gtex_brain_ba24
rs7770359686195797SNHG5ENSG00000203875.62.154E-60192654gtex_brain_ba24
rs2229523686199233SNHG5ENSG00000203875.62.38E-60189218gtex_brain_ba24
rs9450284686199329SNHG5ENSG00000203875.61.614E-80189122gtex_brain_ba24
rs6922686205323SNHG5ENSG00000203875.65.801E-80183128gtex_brain_ba24
rs7761762686205968SNHG5ENSG00000203875.61.819E-80182483gtex_brain_ba24
rs6927475686206773SNHG5ENSG00000203875.61.199E-120181678gtex_brain_ba24
rs140508989686207947SNHG5ENSG00000203875.61.214E-120180504gtex_brain_ba24
rs9450285686208096SNHG5ENSG00000203875.61.214E-120180355gtex_brain_ba24
rs9450287686211984SNHG5ENSG00000203875.68.635E-80176467gtex_brain_ba24
rs9444349686212026SNHG5ENSG00000203875.62.728E-60176425gtex_brain_ba24
rs6454471686214456SNHG5ENSG00000203875.62.12E-80173995gtex_brain_ba24
rs4304137686217448SNHG5ENSG00000203875.62.12E-80171003gtex_brain_ba24
rs35513333686219212SNHG5ENSG00000203875.65.846E-80169239gtex_brain_ba24
rs9450288686221586SNHG5ENSG00000203875.62.682E-110166865gtex_brain_ba24
rs12203963686223316SNHG5ENSG00000203875.61.227E-120165135gtex_brain_ba24
rs6454472686224053SNHG5ENSG00000203875.61.445E-110164398gtex_brain_ba24
rs4419647686225739SNHG5ENSG00000203875.62.12E-80162712gtex_brain_ba24
rs6909767686228109SNHG5ENSG00000203875.64.217E-120160342gtex_brain_ba24
rs4707209686229369SNHG5ENSG00000203875.63.244E-70159082gtex_brain_ba24
rs9353318686231721SNHG5ENSG00000203875.62.12E-80156730gtex_brain_ba24
rs4707211686232710SNHG5ENSG00000203875.61.227E-120155741gtex_brain_ba24
rs9450290686233397SNHG5ENSG00000203875.62.12E-80155054gtex_brain_ba24
rs9344532686234070SNHG5ENSG00000203875.61.557E-80154381gtex_brain_ba24
rs4707212686234384SNHG5ENSG00000203875.69.984E-120154067gtex_brain_ba24
rs9344533686236188SNHG5ENSG00000203875.64.217E-120152263gtex_brain_ba24
rs9450292686236616SNHG5ENSG00000203875.61.227E-120151835gtex_brain_ba24
rs397808289686237115SNHG5ENSG00000203875.61.534E-70151336gtex_brain_ba24
rs4351223686237797SNHG5ENSG00000203875.62.12E-80150654gtex_brain_ba24
rs66661646686238632SNHG5ENSG00000203875.61.632E-110149819gtex_brain_ba24
rs4640862686240147SNHG5ENSG00000203875.61.227E-120148304gtex_brain_ba24
rs7452605686240951SNHG5ENSG00000203875.62.12E-80147500gtex_brain_ba24
rs386407812686241751SNHG5ENSG00000203875.61.766E-70146700gtex_brain_ba24
rs4441928686241894SNHG5ENSG00000203875.64.796E-90146557gtex_brain_ba24
rs9353320686244848SNHG5ENSG00000203875.64.217E-120143603gtex_brain_ba24
rs6454473686245215SNHG5ENSG00000203875.61.061E-100143236gtex_brain_ba24
rs12193777686246709SNHG5ENSG00000203875.61.227E-120141742gtex_brain_ba24
rs59514276686246716SNHG5ENSG00000203875.61.02E-80141735gtex_brain_ba24
rs7775864686247759SNHG5ENSG00000203875.64.217E-120140692gtex_brain_ba24
rs9444351686247799SNHG5ENSG00000203875.61.227E-120140652gtex_brain_ba24
rs9294337686248460SNHG5ENSG00000203875.62.12E-80139991gtex_brain_ba24
rs9444352686257535SNHG5ENSG00000203875.61.227E-120130916gtex_brain_ba24
rs7768065686258557SNHG5ENSG00000203875.62.12E-80129894gtex_brain_ba24
rs12206573686258614SNHG5ENSG00000203875.61.227E-120129837gtex_brain_ba24
rs200908646686258705SNHG5ENSG00000203875.65.361E-80129746gtex_brain_ba24
rs142042965686258706SNHG5ENSG00000203875.61.073E-70129745gtex_brain_ba24
rs7766485686263555SNHG5ENSG00000203875.61.227E-120124896gtex_brain_ba24
rs7771612686264374SNHG5ENSG00000203875.64.217E-120124077gtex_brain_ba24
rs4706240686273757SNHG5ENSG00000203875.69.411E-80114694gtex_brain_ba24
rs199914609686274824SNHG5ENSG00000203875.62.972E-110113627gtex_brain_ba24
rs7742691686278691SNHG5ENSG00000203875.62.142E-100109760gtex_brain_ba24
rs4296866686279737SNHG5ENSG00000203875.63.671E-90108714gtex_brain_ba24
rs67585971686280051SNHG5ENSG00000203875.64.642E-110108400gtex_brain_ba24
rs9342041686280875SNHG5ENSG00000203875.64.778E-110107576gtex_brain_ba24
rs6935918686283575SNHG5ENSG00000203875.64.778E-110104876gtex_brain_ba24
rs562867200686283777SNHG5ENSG00000203875.61.227E-120104674gtex_brain_ba24
rs11752795686287129SNHG5ENSG00000203875.61.301E-110101322gtex_brain_ba24
rs9450302686289673SNHG5ENSG00000203875.61.299E-9098778gtex_brain_ba24
rs9444354686291935SNHG5ENSG00000203875.61.227E-12096516gtex_brain_ba24
rs12199873686294947SNHG5ENSG00000203875.61.864E-8093504gtex_brain_ba24
rs71551484686295398SNHG5ENSG00000203875.62.12E-8093053gtex_brain_ba24
rs6454477686295429SNHG5ENSG00000203875.61.962E-6093022gtex_brain_ba24
rs2842608686295858SNHG5ENSG00000203875.62.12E-8092593gtex_brain_ba24
rs2842609686296788SNHG5ENSG00000203875.62.12E-8091663gtex_brain_ba24
rs2842610686298063SNHG5ENSG00000203875.61.269E-12090388gtex_brain_ba24
rs2842611686302034SNHG5ENSG00000203875.61.439E-11086417gtex_brain_ba24
rs2842612686303091SNHG5ENSG00000203875.62.112E-8085360gtex_brain_ba24
rs2758840686304625SNHG5ENSG00000203875.62.112E-8083826gtex_brain_ba24
rs9362230686305013SNHG5ENSG00000203875.62.112E-8083438gtex_brain_ba24
rs2842613686305702SNHG5ENSG00000203875.62.112E-8082749gtex_brain_ba24
rs9359658686305769SNHG5ENSG00000203875.64.765E-11082682gtex_brain_ba24
rs2842614686306069SNHG5ENSG00000203875.64.765E-11082382gtex_brain_ba24
rs2758842686308731SNHG5ENSG00000203875.64.756E-11079720gtex_brain_ba24
rs2842617686309698SNHG5ENSG00000203875.64.289E-12078753gtex_brain_ba24
rs397792255686310331SNHG5ENSG00000203875.62.34E-10078120gtex_brain_ba24
rs201022785686314490SNHG5ENSG00000203875.62.116E-8073961gtex_brain_ba24
rs386407813686314493SNHG5ENSG00000203875.62.116E-8073958gtex_brain_ba24
rs2842600686325632SNHG5ENSG00000203875.61.443E-11062819gtex_brain_ba24
rs911927686327860SNHG5ENSG00000203875.64.766E-11060591gtex_brain_ba24
rs2758843686328431SNHG5ENSG00000203875.64.766E-11060020gtex_brain_ba24
rs397887790686329515SNHG5ENSG00000203875.62.734E-8058936gtex_brain_ba24
rs2758844686330115SNHG5ENSG00000203875.62.116E-8058336gtex_brain_ba24
rs2842601686330133SNHG5ENSG00000203875.62.116E-8058318gtex_brain_ba24
rs2842602686331887SNHG5ENSG00000203875.62.119E-8056564gtex_brain_ba24
rs12205013686333029SNHG5ENSG00000203875.62.118E-8055422gtex_brain_ba24
rs2758845686334848SNHG5ENSG00000203875.63.537E-11053603gtex_brain_ba24
rs2842605686335150SNHG5ENSG00000203875.61.222E-12053301gtex_brain_ba24
rs2842604686336300SNHG5ENSG00000203875.62.12E-8052151gtex_brain_ba24
rs2842603686336337SNHG5ENSG00000203875.66.251E-11052114gtex_brain_ba24
rs2842615686340848SNHG5ENSG00000203875.61.222E-12047603gtex_brain_ba24
rs12212560686342679SNHG5ENSG00000203875.64.782E-11045772gtex_brain_ba24
rs2758849686344296SNHG5ENSG00000203875.61.202E-12044155gtex_brain_ba24
rs2842607686345039SNHG5ENSG00000203875.66.755E-8043412gtex_brain_ba24
rs397766439686347189SNHG5ENSG00000203875.61.219E-12041262gtex_brain_ba24
rs2758848686347605SNHG5ENSG00000203875.61.223E-12040846gtex_brain_ba24
rs2758847686349103SNHG5ENSG00000203875.62.121E-8039348gtex_brain_ba24
rs2758846686349570SNHG5ENSG00000203875.69.472E-9038881gtex_brain_ba24
rs4348284686350394SNHG5ENSG00000203875.61.465E-11038057gtex_brain_ba24
rs4145082686352016SNHG5ENSG00000203875.63.059E-7036435gtex_brain_ba24
rs9344539686353621SNHG5ENSG00000203875.66.851E-13034830gtex_brain_ba24
rs9362232686353622SNHG5ENSG00000203875.62.521E-12034829gtex_brain_ba24
rs3812133686354411SNHG5ENSG00000203875.62.125E-8034040gtex_brain_ba24
rs9362233686358247SNHG5ENSG00000203875.62.131E-8030204gtex_brain_ba24
rs10944133686358984SNHG5ENSG00000203875.62.131E-8029467gtex_brain_ba24
rs68074224686359704SNHG5ENSG00000203875.62.131E-8028747gtex_brain_ba24
rs75492937686359878SNHG5ENSG00000203875.62.131E-8028573gtex_brain_ba24
rs9351065686360428SNHG5ENSG00000203875.62.131E-8028023gtex_brain_ba24
rs9344540686364434SNHG5ENSG00000203875.63.804E-11024017gtex_brain_ba24
rs2475790686368068SNHG5ENSG00000203875.62.127E-8020383gtex_brain_ba24
rs2475791686368164SNHG5ENSG00000203875.62.127E-8020287gtex_brain_ba24
rs1173415686374226SNHG5ENSG00000203875.67.63E-7014225gtex_brain_ba24
rs9450311686376586SNHG5ENSG00000203875.61.368E-12011865gtex_brain_ba24
rs200625688686378635SNHG5ENSG00000203875.64.8E-1109816gtex_brain_ba24
rs7757864686381361SNHG5ENSG00000203875.64.844E-1107090gtex_brain_ba24
rs2783171686382765SNHG5ENSG00000203875.62.127E-805686gtex_brain_ba24
rs1059307686387888SNHG5ENSG00000203875.62.039E-120563gtex_brain_ba24
rs1059306686388109SNHG5ENSG00000203875.62.12E-80342gtex_brain_ba24
rs3087978686388223SNHG5ENSG00000203875.61.229E-120228gtex_brain_ba24
rs2475792686392102SNHG5ENSG00000203875.62.981E-90-3651gtex_brain_ba24
rs9344542686393905SNHG5ENSG00000203875.62.769E-90-5454gtex_brain_ba24
rs9353327686394066SNHG5ENSG00000203875.62.722E-90-5615gtex_brain_ba24
rs2484355686394403SNHG5ENSG00000203875.65.489E-80-5952gtex_brain_ba24
rs1885607686394905SNHG5ENSG00000203875.61.649E-70-6454gtex_brain_ba24
rs4707217686396932SNHG5ENSG00000203875.62.058E-70-8481gtex_brain_ba24
rs9444361686400900SNHG5ENSG00000203875.62.12E-80-12449gtex_brain_ba24
rs1173419686402163SNHG5ENSG00000203875.61.116E-100-13712gtex_brain_ba24
rs1173418686402916SNHG5ENSG00000203875.61.825E-120-14465gtex_brain_ba24
rs1173417686403941SNHG5ENSG00000203875.68.369E-110-15490gtex_brain_ba24
rs144390890686404523SNHG5ENSG00000203875.68.202E-110-16072gtex_brain_ba24
rs2484356686406280SNHG5ENSG00000203875.68.779E-110-17829gtex_brain_ba24
rs142373019686407758SNHG5ENSG00000203875.65.049E-130-19307gtex_brain_ba24
rs4293973686408617SNHG5ENSG00000203875.61.593E-110-20166gtex_brain_ba24
rs9450316686408836SNHG5ENSG00000203875.65.419E-90-20385gtex_brain_ba24
rs9362237686409064SNHG5ENSG00000203875.62.12E-80-20613gtex_brain_ba24
rs6454481686409998SNHG5ENSG00000203875.68.377E-120-21547gtex_brain_ba24
rs7752502686410651SNHG5ENSG00000203875.64.217E-120-22200gtex_brain_ba24
rs11450297686411921SNHG5ENSG00000203875.62.584E-100-23470gtex_brain_ba24
rs547515584686411922SNHG5ENSG00000203875.66.685E-90-23471gtex_brain_ba24
rs7762321686412146SNHG5ENSG00000203875.64.772E-110-23695gtex_brain_ba24
rs71918709686412575SNHG5ENSG00000203875.64.53E-100-24124gtex_brain_ba24
rs9342044686414030SNHG5ENSG00000203875.69.042E-100-25579gtex_brain_ba24
rs2475787686415236SNHG5ENSG00000203875.68.521E-100-26785gtex_brain_ba24
rs1173416686415813SNHG5ENSG00000203875.68.965E-110-27362gtex_brain_ba24
rs2475788686416901SNHG5ENSG00000203875.61.075E-90-28450gtex_brain_ba24
rs6454482686418188SNHG5ENSG00000203875.68.527E-100-29737gtex_brain_ba24
rs6454483686418283SNHG5ENSG00000203875.61.107E-100-29832gtex_brain_ba24
rs6925587686418960SNHG5ENSG00000203875.61.529E-80-30509gtex_brain_ba24
rs11336848686419024SNHG5ENSG00000203875.61.137E-100-30573gtex_brain_ba24
rs6454484686419909SNHG5ENSG00000203875.69.188E-90-31458gtex_brain_ba24
rs7764747686421414SNHG5ENSG00000203875.68.971E-110-32963gtex_brain_ba24
rs7755996686423720SNHG5ENSG00000203875.68.527E-100-35269gtex_brain_ba24
rs9342045686425148SNHG5ENSG00000203875.62.156E-120-36697gtex_brain_ba24
rs10944134686426468SNHG5ENSG00000203875.61.304E-60-38017gtex_brain_ba24
rs9450318686427177SNHG5ENSG00000203875.63.591E-90-38726gtex_brain_ba24
rs9450319686427325SNHG5ENSG00000203875.63.583E-90-38874gtex_brain_ba24
rs35966587686429224SNHG5ENSG00000203875.63.587E-90-40773gtex_brain_ba24
rs9362239686429263SNHG5ENSG00000203875.63.587E-90-40812gtex_brain_ba24
rs397885718686430196SNHG5ENSG00000203875.63.31E-90-41745gtex_brain_ba24
rs7742201686432930SNHG5ENSG00000203875.62.124E-80-44479gtex_brain_ba24
rs6454486686433587SNHG5ENSG00000203875.63.587E-90-45136gtex_brain_ba24
rs9342046686435599SNHG5ENSG00000203875.62.211E-80-47148gtex_brain_ba24
rs4383777686435960SNHG5ENSG00000203875.63.592E-90-47509gtex_brain_ba24
rs71003207686437481SNHG5ENSG00000203875.66.114E-90-49030gtex_brain_ba24
rs10806334686439329SNHG5ENSG00000203875.63.554E-100-50878gtex_brain_ba24
rs72907388686440207SNHG5ENSG00000203875.64.688E-90-51756gtex_brain_ba24
rs66807489686440702SNHG5ENSG00000203875.69.256E-100-52251gtex_brain_ba24
rs201534987686442465SNHG5ENSG00000203875.64.977E-110-54014gtex_brain_ba24
rs12213343686443019SNHG5ENSG00000203875.61.035E-90-54568gtex_brain_ba24
rs9353335686443831SNHG5ENSG00000203875.61.295E-80-55380gtex_brain_ba24
rs12215265686443969SNHG5ENSG00000203875.61.035E-90-55518gtex_brain_ba24
rs12197463686445242SNHG5ENSG00000203875.61.034E-90-56791gtex_brain_ba24
rs6454487686446868SNHG5ENSG00000203875.69.272E-100-58417gtex_brain_ba24
rs397887182686448204SNHG5ENSG00000203875.61.385E-60-59753gtex_brain_ba24
rs10944136686448499SNHG5ENSG00000203875.62.157E-90-60048gtex_brain_ba24
rs2225754686449698SNHG5ENSG00000203875.64.68E-90-61247gtex_brain_ba24
rs9647601686449827SNHG5ENSG00000203875.69.28E-100-61376gtex_brain_ba24
rs11755642686450066SNHG5ENSG00000203875.64.68E-90-61615gtex_brain_ba24
rs6454488686450842SNHG5ENSG00000203875.61.038E-90-62391gtex_brain_ba24
rs12193904686452703SNHG5ENSG00000203875.64.68E-90-64252gtex_brain_ba24
rs10944137686454314SNHG5ENSG00000203875.64.68E-90-65863gtex_brain_ba24
rs11754330686455070SNHG5ENSG00000203875.64.68E-90-66619gtex_brain_ba24
rs34622605686456519SNHG5ENSG00000203875.65.149E-90-68068gtex_brain_ba24
rs13207173686457522SNHG5ENSG00000203875.61.041E-90-69071gtex_brain_ba24
rs12212480686458777SNHG5ENSG00000203875.65.152E-90-70326gtex_brain_ba24
rs34795473686461799SNHG5ENSG00000203875.61.041E-90-73348gtex_brain_ba24
rs4098044686462066SNHG5ENSG00000203875.61.041E-90-73615gtex_brain_ba24
rs2324817686462654SNHG5ENSG00000203875.61.041E-90-74203gtex_brain_ba24
rs7450035686463318SNHG5ENSG00000203875.63.32E-80-74867gtex_brain_ba24
rs3966881686463496SNHG5ENSG00000203875.63.054E-70-75045gtex_brain_ba24
rs1335442686466692SNHG5ENSG00000203875.62.895E-90-78241gtex_brain_ba24
rs791503686467102SNHG5ENSG00000203875.63.352E-70-78651gtex_brain_ba24
rs806529686467121SNHG5ENSG00000203875.63.496E-70-78670gtex_brain_ba24
rs12212151686467338SNHG5ENSG00000203875.61.906E-90-78887gtex_brain_ba24
rs147447729686468512SNHG5ENSG00000203875.63.27E-80-80061gtex_brain_ba24
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rs9450311686376586SNHG5ENSG00000203875.64.136E-11011865gtex_brain_putamen_basal
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rs7764747686421414SNHG5ENSG00000203875.63.129E-80-32963gtex_brain_putamen_basal
rs9342045686425148SNHG5ENSG00000203875.66.269E-80-36697gtex_brain_putamen_basal
rs10806334686439329SNHG5ENSG00000203875.62.477E-70-50878gtex_brain_putamen_basal
rs201534987686442465SNHG5ENSG00000203875.64.526E-60-54014gtex_brain_putamen_basal
rs12192033686472559SNHG5ENSG00000203875.65.271E-60-84108gtex_brain_putamen_basal
rs12195776686488599SNHG5ENSG00000203875.65.27E-60-100148gtex_brain_putamen_basal
rs2324818686495764SNHG5ENSG00000203875.65.291E-60-107313gtex_brain_putamen_basal
rs10944141686496600SNHG5ENSG00000203875.65.286E-60-108149gtex_brain_putamen_basal
rs12206726686499716SNHG5ENSG00000203875.65.27E-60-111265gtex_brain_putamen_basal
rs1414201686500316SNHG5ENSG00000203875.65.27E-60-111865gtex_brain_putamen_basal
rs7453105686500761SNHG5ENSG00000203875.65.273E-60-112310gtex_brain_putamen_basal
rs12209259686502348SNHG5ENSG00000203875.65.286E-60-113897gtex_brain_putamen_basal

Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

No co-expressed genes in brain regions


Section V. Pathway annotation

Pathway namePathway size# SZGR 2.0 genes in pathwayInfo
FULCHER INFLAMMATORY RESPONSE LECTIN VS LPS UP 579346All SZGR 2.0 genes in this pathway
BENPORATH MYC TARGETS WITH EBOX 230156All SZGR 2.0 genes in this pathway
PEDERSEN METASTASIS BY ERBB2 ISOFORM 7 403240All SZGR 2.0 genes in this pathway
KRIEG HYPOXIA NOT VIA KDM3A 770480All SZGR 2.0 genes in this pathway