Summary ?
GeneID51326
SymbolARL17A
SynonymsARF1P2|ARL17P1
DescriptionADP ribosylation factor like GTPase 17A
ReferenceHGNC:HGNC:24096|Ensembl:ENSG00000185829|HPRD:17424|Vega:OTTHUMG00000132817
Gene typeprotein-coding
Map location17q21.31
Pascal p-value0.015
eGeneCaudate basal ganglia
Cerebellar Hemisphere
Cerebellum
Cortex
Frontal Cortex BA9
Hippocampus
Hypothalamus
Nucleus accumbens basal ganglia
Putamen basal ganglia
Myers' cis & trans
Meta

Gene in Data Sources
Gene set name Method of gene setDescriptionInfo
CV:PGCnpGenome-wide Association StudyGWAS

Section I. Genetics and epigenetics annotation

@eQTL annotation

SNP IDChromosomePositioneGeneGene Entrez IDpvalueqvalueTSS distanceeQTL type
rs242556chr1744002249ARL17A513260cis
rs17651507chr1744059009ARL17A513260cis
rs12452064chr1744868186ARL17A513260.02cis
rs7337531chr13109611085ARL17A513260.1trans
rs242556chr1744002249ARL17A513260.09trans
rs129510571744794558ARL17AENSG00000185829.116.88512E-80-137470gtex_brain_putamen_basal
rs176981761744819595ARL17AENSG00000185829.111.26171E-60-162507gtex_brain_putamen_basal
rs357328281744833217ARL17AENSG00000185829.114.72424E-80-176129gtex_brain_putamen_basal

Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

No co-expressed genes in brain regions


Section V. Pathway annotation

Pathway namePathway size# SZGR 2.0 genes in pathwayInfo
RICKMAN METASTASIS UP 344180All SZGR 2.0 genes in this pathway
KRIGE RESPONSE TO TOSEDOSTAT 6HR UP 953554All SZGR 2.0 genes in this pathway
KRIGE RESPONSE TO TOSEDOSTAT 24HR DN 1011592All SZGR 2.0 genes in this pathway
WALLACE PROSTATE CANCER RACE DN 8842All SZGR 2.0 genes in this pathway
TOYOTA TARGETS OF MIR34B AND MIR34C 463262All SZGR 2.0 genes in this pathway
WANG RESPONSE TO GSK3 INHIBITOR SB216763 UP 397206All SZGR 2.0 genes in this pathway
ZWANG DOWN BY 2ND EGF PULSE 293119All SZGR 2.0 genes in this pathway