Summary ?
GeneID51379
SymbolCRLF3
SynonymsCREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2
Descriptioncytokine receptor-like factor 3
ReferenceMIM:614853|HGNC:HGNC:17177|Ensembl:ENSG00000176390|HPRD:16757|Vega:OTTHUMG00000179005
Gene typeprotein-coding
Map location17q11.2
Pascal p-value0.003
Sherlock p-value0.158
eGeneAnterior cingulate cortex BA24
Cerebellar Hemisphere
Cerebellum
Cortex
Frontal Cortex BA9
Nucleus accumbens basal ganglia
Myers' cis & trans
Meta

Gene in Data Sources
Gene set name Method of gene setDescriptionInfo
CV:PGCnpGenome-wide Association StudyGWAS

Section I. Genetics and epigenetics annotation

@eQTL annotation

SNP IDChromosomePositioneGeneGene Entrez IDpvalueqvalueTSS distanceeQTL type
rs7147147chr1455407943CRLF3513790.18trans
rs2164251728943479CRLF3ENSG00000176390.103.13E-60.01208315gtex_brain_ba24
rs5368191728948792CRLF3ENSG00000176390.103.134E-60.01203002gtex_brain_ba24
rs5636741728949444CRLF3ENSG00000176390.103.225E-60.01202350gtex_brain_ba24
rs3834361728959179CRLF3ENSG00000176390.102.891E-60.01192615gtex_brain_ba24
rs603438731728959568CRLF3ENSG00000176390.102.881E-60.01192226gtex_brain_ba24
rs593632731728959743CRLF3ENSG00000176390.102.741E-60.01192051gtex_brain_ba24
rs3861801728959917CRLF3ENSG00000176390.102.873E-60.01191877gtex_brain_ba24
rs4076041728962472CRLF3ENSG00000176390.102.82E-60.01189322gtex_brain_ba24
rs116508211728968150CRLF3ENSG00000176390.102.85E-60.01183644gtex_brain_ba24
rs116556811728969013CRLF3ENSG00000176390.102.786E-60.01182781gtex_brain_ba24
rs720193941728969921CRLF3ENSG00000176390.102.451E-60.01181873gtex_brain_ba24
rs2014142821728970318CRLF3ENSG00000176390.102.096E-60.01181476gtex_brain_ba24
rs286535801728990047CRLF3ENSG00000176390.103.417E-60.01161747gtex_brain_ba24
rs286098111728990145CRLF3ENSG00000176390.103.308E-60.01161649gtex_brain_ba24
rs732678281729003806CRLF3ENSG00000176390.103.072E-60.01147988gtex_brain_ba24
rs563785761729010120CRLF3ENSG00000176390.102.944E-60.01141674gtex_brain_ba24
rs608905501729030861CRLF3ENSG00000176390.101.881E-60.01120933gtex_brain_ba24
rs1809507581729036425CRLF3ENSG00000176390.102.874E-70.01115369gtex_brain_ba24
rs752597571729036967CRLF3ENSG00000176390.102.448E-60.01114827gtex_brain_ba24
rs556613521729045628CRLF3ENSG00000176390.101.928E-60.01106166gtex_brain_ba24
rs116547221729046782CRLF3ENSG00000176390.101.928E-60.01105012gtex_brain_ba24
rs752596921729056712CRLF3ENSG00000176390.102.38E-60.0195082gtex_brain_ba24
rs80750971729057326CRLF3ENSG00000176390.102.358E-60.0194468gtex_brain_ba24
rs594473721729057585CRLF3ENSG00000176390.102.472E-60.0194209gtex_brain_ba24
rs616437151729057762CRLF3ENSG00000176390.102.476E-60.0194032gtex_brain_ba24
rs1908998531729058250CRLF3ENSG00000176390.108.824E-70.0193544gtex_brain_ba24
rs116509241729058676CRLF3ENSG00000176390.102.137E-60.0193118gtex_brain_ba24
rs116509281729058694CRLF3ENSG00000176390.101.741E-60.0193100gtex_brain_ba24
rs80808291729058730CRLF3ENSG00000176390.102.611E-60.0193064gtex_brain_ba24
rs80798911729058863CRLF3ENSG00000176390.102.623E-60.0192931gtex_brain_ba24
rs732678581729059737CRLF3ENSG00000176390.102.733E-60.0192057gtex_brain_ba24
rs116568441729060597CRLF3ENSG00000176390.102.849E-60.0191197gtex_brain_ba24
rs116525331729060601CRLF3ENSG00000176390.102.849E-60.0191193gtex_brain_ba24
rs116526311729060766CRLF3ENSG00000176390.102.819E-60.0191028gtex_brain_ba24
rs732678611729061632CRLF3ENSG00000176390.102.938E-60.0190162gtex_brain_ba24
rs723108091729062041CRLF3ENSG00000176390.102.51E-60.0189753gtex_brain_ba24
rs284457421729062403CRLF3ENSG00000176390.102.973E-60.0189391gtex_brain_ba24
rs98925991729062491CRLF3ENSG00000176390.103.08E-60.0189303gtex_brain_ba24
rs3978576021729062712CRLF3ENSG00000176390.102.246E-60.0189082gtex_brain_ba24
rs791392331729063635CRLF3ENSG00000176390.103.262E-60.0188159gtex_brain_ba24
rs774987251729063986CRLF3ENSG00000176390.103.299E-60.0187808gtex_brain_ba24
rs771716031729064291CRLF3ENSG00000176390.103.094E-60.0187503gtex_brain_ba24
rs584120691729064353CRLF3ENSG00000176390.103.325E-60.0187441gtex_brain_ba24
rs612237201729064362CRLF3ENSG00000176390.103.325E-60.0187432gtex_brain_ba24
rs597498411729064701CRLF3ENSG00000176390.103.275E-60.0187093gtex_brain_ba24
rs576981841729064918CRLF3ENSG00000176390.102.306E-60.0186876gtex_brain_ba24
rs599237961729064919CRLF3ENSG00000176390.101.836E-60.0186875gtex_brain_ba24
rs574241131729065031CRLF3ENSG00000176390.103.019E-60.0186763gtex_brain_ba24
rs595733981729065044CRLF3ENSG00000176390.103.062E-60.0186750gtex_brain_ba24
rs98898871729065541CRLF3ENSG00000176390.103.364E-60.0186253gtex_brain_ba24
rs573476661729069543CRLF3ENSG00000176390.103.473E-60.0182251gtex_brain_ba24
rs1175607281729070938CRLF3ENSG00000176390.102.795E-60.0180856gtex_brain_ba24
rs39072911729071337CRLF3ENSG00000176390.103.069E-60.0180457gtex_brain_ba24
rs748129831729071457CRLF3ENSG00000176390.103.196E-60.0180337gtex_brain_ba24
rs23222031729072265CRLF3ENSG00000176390.102.577E-60.0179529gtex_brain_ba24
rs98983181729072756CRLF3ENSG00000176390.103.391E-60.0179038gtex_brain_ba24
rs98925621729072886CRLF3ENSG00000176390.103.195E-60.0178908gtex_brain_ba24
rs80703721729075816CRLF3ENSG00000176390.102.425E-60.0175978gtex_brain_ba24
rs80694001729075967CRLF3ENSG00000176390.103.402E-60.0175827gtex_brain_ba24
rs80731641729076018CRLF3ENSG00000176390.103.148E-60.0175776gtex_brain_ba24
rs26269851729077437CRLF3ENSG00000176390.103.281E-60.0174357gtex_brain_ba24
rs72091821729078813CRLF3ENSG00000176390.103.021E-60.0172981gtex_brain_ba24
rs286157881729079579CRLF3ENSG00000176390.103.426E-60.0172215gtex_brain_ba24
rs98917691729080783CRLF3ENSG00000176390.103.393E-60.0171011gtex_brain_ba24
rs99126491729080784CRLF3ENSG00000176390.103.431E-60.0171010gtex_brain_ba24
rs356899401729081526CRLF3ENSG00000176390.103.125E-60.0170268gtex_brain_ba24
rs287100571729083070CRLF3ENSG00000176390.103.268E-60.0168724gtex_brain_ba24
rs749633701729083714CRLF3ENSG00000176390.103.306E-60.0168080gtex_brain_ba24
rs284337041729084285CRLF3ENSG00000176390.103.453E-60.0167509gtex_brain_ba24
rs558702721729086105CRLF3ENSG00000176390.102.874E-60.0165689gtex_brain_ba24
rs99112681729094253CRLF3ENSG00000176390.102.929E-60.0157541gtex_brain_ba24
rs611460821729100087CRLF3ENSG00000176390.101.593E-60.0151707gtex_brain_ba24
rs10556701729100394CRLF3ENSG00000176390.103.167E-60.0151400gtex_brain_ba24
rs72259531729103631CRLF3ENSG00000176390.102.12E-60.0148163gtex_brain_ba24
rs99167251729107471CRLF3ENSG00000176390.103.223E-60.0144323gtex_brain_ba24
rs99167271729107472CRLF3ENSG00000176390.103.223E-60.0144322gtex_brain_ba24
rs605461311729109908CRLF3ENSG00000176390.102.614E-60.0141886gtex_brain_ba24
rs588247551729109919CRLF3ENSG00000176390.102.289E-60.0141875gtex_brain_ba24
rs2020197081729109927CRLF3ENSG00000176390.101.98E-60.0141867gtex_brain_ba24

Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

No co-expressed genes in brain regions


Section V. Pathway annotation

Pathway namePathway size# SZGR 2.0 genes in pathwayInfo
KINSEY TARGETS OF EWSR1 FLII FUSION UP 1278748All SZGR 2.0 genes in this pathway
ENK UV RESPONSE EPIDERMIS DN 508354All SZGR 2.0 genes in this pathway
SPIELMAN LYMPHOBLAST EUROPEAN VS ASIAN DN 584395All SZGR 2.0 genes in this pathway
PUJANA BRCA1 PCC NETWORK 16521023All SZGR 2.0 genes in this pathway
PUJANA ATM PCC NETWORK 1442892All SZGR 2.0 genes in this pathway
GEORGES TARGETS OF MIR192 AND MIR215 893528All SZGR 2.0 genes in this pathway
BROWNE HCMV INFECTION 16HR UP 225139All SZGR 2.0 genes in this pathway
MARTINEZ RESPONSE TO TRABECTEDIN DN 271175All SZGR 2.0 genes in this pathway
SARRIO EPITHELIAL MESENCHYMAL TRANSITION UP 180114All SZGR 2.0 genes in this pathway
MOOTHA PGC 420269All SZGR 2.0 genes in this pathway
CHEN METABOLIC SYNDROM NETWORK 1210725All SZGR 2.0 genes in this pathway
YAGI AML WITH T 8 21 TRANSLOCATION 368247All SZGR 2.0 genes in this pathway
FONTAINE FOLLICULAR THYROID ADENOMA UP 7543All SZGR 2.0 genes in this pathway
TORCHIA TARGETS OF EWSR1 FLI1 FUSION DN 321200All SZGR 2.0 genes in this pathway
NABA SECRETED FACTORS 344197All SZGR 2.0 genes in this pathway
NABA MATRISOME ASSOCIATED 753411All SZGR 2.0 genes in this pathway
NABA MATRISOME 1028559All SZGR 2.0 genes in this pathway