Summary ?
GeneID55006
SymbolTRMT61B
Synonyms-
DescriptiontRNA methyltransferase 61B
ReferenceHGNC:HGNC:26070|Ensembl:ENSG00000171103|HPRD:07935|Vega:OTTHUMG00000128433
Gene typeprotein-coding
Map location2p23.2
Pascal p-value0.006
Sherlock p-value0.316
eGeneCaudate basal ganglia
Cortex
Frontal Cortex BA9
Putamen basal ganglia
Meta

Gene in Data Sources
Gene set name Method of gene setDescriptionInfo
CV:PGCnpGenome-wide Association StudyGWAS

Section I. Genetics and epigenetics annotation

@eQTL annotation

SNP IDChromosomePositioneGeneGene Entrez IDpvalueqvalueTSS distanceeQTL type
rs10198789228968811TRMT61BENSG00000171103.61.211E-60.01124356gtex_brain_putamen_basal
rs10174533228968928TRMT61BENSG00000171103.61.183E-60.01124239gtex_brain_putamen_basal
rs12714241228969413TRMT61BENSG00000171103.61.167E-60.01123754gtex_brain_putamen_basal
rs966250228974139TRMT61BENSG00000171103.61.122E-60.01119028gtex_brain_putamen_basal
rs4233728228977274TRMT61BENSG00000171103.61.418E-60.01115893gtex_brain_putamen_basal
rs6547873228981983TRMT61BENSG00000171103.61.813E-70.01111184gtex_brain_putamen_basal
rs6547874228982030TRMT61BENSG00000171103.61.815E-70.01111137gtex_brain_putamen_basal
rs12714242228982629TRMT61BENSG00000171103.61.599E-70.01110538gtex_brain_putamen_basal
rs7579321228983166TRMT61BENSG00000171103.61.82E-70.01110001gtex_brain_putamen_basal
rs10865507228983991TRMT61BENSG00000171103.62.062E-70.01109176gtex_brain_putamen_basal
rs397720354228986568TRMT61BENSG00000171103.63.478E-70.01106599gtex_brain_putamen_basal
rs6709674228989667TRMT61BENSG00000171103.65.855E-70.01103500gtex_brain_putamen_basal
rs6752464228989887TRMT61BENSG00000171103.63.565E-70.01103280gtex_brain_putamen_basal
rs12472549228992004TRMT61BENSG00000171103.62.346E-60.01101163gtex_brain_putamen_basal
rs11127189228992020TRMT61BENSG00000171103.61.845E-70.01101147gtex_brain_putamen_basal
rs12714243228992293TRMT61BENSG00000171103.63.559E-70.01100874gtex_brain_putamen_basal
rs11686412228992405TRMT61BENSG00000171103.62.348E-60.01100762gtex_brain_putamen_basal
rs6706858228992607TRMT61BENSG00000171103.62.349E-60.01100560gtex_brain_putamen_basal
rs60172496228993652TRMT61BENSG00000171103.61.425E-60.0199515gtex_brain_putamen_basal
rs13007183228993903TRMT61BENSG00000171103.64.255E-70.0199264gtex_brain_putamen_basal
rs398071257228994282TRMT61BENSG00000171103.61.311E-60.0198885gtex_brain_putamen_basal
rs10183665228995226TRMT61BENSG00000171103.61.601E-70.0197941gtex_brain_putamen_basal
rs10204329228998077TRMT61BENSG00000171103.62.053E-60.0195090gtex_brain_putamen_basal
rs1128416229001691TRMT61BENSG00000171103.62.04E-60.0191476gtex_brain_putamen_basal
rs201955692229003786TRMT61BENSG00000171103.69.203E-70.0189381gtex_brain_putamen_basal
rs72113253229003787TRMT61BENSG00000171103.63.791E-70.0189380gtex_brain_putamen_basal
rs12151717229004046TRMT61BENSG00000171103.61.601E-70.0189121gtex_brain_putamen_basal
rs6730321229004299TRMT61BENSG00000171103.61.601E-70.0188868gtex_brain_putamen_basal
rs3768665229005602TRMT61BENSG00000171103.61.413E-60.0187565gtex_brain_putamen_basal
rs3768666229005870TRMT61BENSG00000171103.61.601E-70.0187297gtex_brain_putamen_basal
rs6547877229006591TRMT61BENSG00000171103.61.705E-60.0186576gtex_brain_putamen_basal
rs6742291229007349TRMT61BENSG00000171103.62.046E-60.0185818gtex_brain_putamen_basal
rs145970865229007808TRMT61BENSG00000171103.61.05E-60.0185359gtex_brain_putamen_basal
rs62129843229008175TRMT61BENSG00000171103.62.064E-60.0184992gtex_brain_putamen_basal
rs4632297229008425TRMT61BENSG00000171103.65.551E-70.0184742gtex_brain_putamen_basal
rs4254466229009049TRMT61BENSG00000171103.61.209E-70.0184118gtex_brain_putamen_basal
rs4477866229009089TRMT61BENSG00000171103.64.609E-80.0184078gtex_brain_putamen_basal
rs6747852229009840TRMT61BENSG00000171103.62.046E-60.0183327gtex_brain_putamen_basal
rs6547878229010066TRMT61BENSG00000171103.62.052E-60.0183101gtex_brain_putamen_basal
rs6419696229010339TRMT61BENSG00000171103.63.063E-70.0182828gtex_brain_putamen_basal
rs2045886229010517TRMT61BENSG00000171103.61.601E-70.0182650gtex_brain_putamen_basal
rs34205614229011141TRMT61BENSG00000171103.61.601E-70.0182026gtex_brain_putamen_basal
rs199861660229011335TRMT61BENSG00000171103.63.286E-70.0181832gtex_brain_putamen_basal
rs5830089229011337TRMT61BENSG00000171103.61.601E-70.0181830gtex_brain_putamen_basal
rs13016112229012574TRMT61BENSG00000171103.62.061E-70.0180593gtex_brain_putamen_basal
rs13011935229014746TRMT61BENSG00000171103.61.601E-70.0178421gtex_brain_putamen_basal
rs13018031229015982TRMT61BENSG00000171103.61.601E-70.0177185gtex_brain_putamen_basal
rs13019397229016019TRMT61BENSG00000171103.61.002E-70.0177148gtex_brain_putamen_basal
rs146935359229016262TRMT61BENSG00000171103.61.601E-70.0176905gtex_brain_putamen_basal
rs12714246229017358TRMT61BENSG00000171103.61.624E-70.0175809gtex_brain_putamen_basal
rs13030835229017474TRMT61BENSG00000171103.61.601E-70.0175693gtex_brain_putamen_basal
rs6547880229018889TRMT61BENSG00000171103.63.491E-70.0174278gtex_brain_putamen_basal
rs57569499229019056TRMT61BENSG00000171103.63.22E-70.0174111gtex_brain_putamen_basal
rs35278492229021511TRMT61BENSG00000171103.62.914E-70.0171656gtex_brain_putamen_basal
rs5830090229021814TRMT61BENSG00000171103.63.059E-70.0171353gtex_brain_putamen_basal
rs7475229023749TRMT61BENSG00000171103.61.601E-70.0169418gtex_brain_putamen_basal
rs3190229025479TRMT61BENSG00000171103.61.697E-70.0167688gtex_brain_putamen_basal
rs12475612229030006TRMT61BENSG00000171103.61.101E-70.0163161gtex_brain_putamen_basal
rs4132617229031312TRMT61BENSG00000171103.62.946E-70.0161855gtex_brain_putamen_basal
rs7601413229032238TRMT61BENSG00000171103.61.601E-70.0160929gtex_brain_putamen_basal
rs7601720229032478TRMT61BENSG00000171103.61.601E-70.0160689gtex_brain_putamen_basal
rs7601934229032673TRMT61BENSG00000171103.62.773E-70.0160494gtex_brain_putamen_basal
rs6547881229032746TRMT61BENSG00000171103.61.601E-70.0160421gtex_brain_putamen_basal
rs7567861229035849TRMT61BENSG00000171103.61.889E-70.0157318gtex_brain_putamen_basal
rs6547882229037001TRMT61BENSG00000171103.61.679E-70.0156166gtex_brain_putamen_basal
rs13009357229041877TRMT61BENSG00000171103.63.989E-70.0151290gtex_brain_putamen_basal
rs11127190229043212TRMT61BENSG00000171103.67.822E-70.0149955gtex_brain_putamen_basal
rs62131973229044437TRMT61BENSG00000171103.65.081E-70.0148730gtex_brain_putamen_basal
rs13024443229046185TRMT61BENSG00000171103.66.003E-70.0146982gtex_brain_putamen_basal
rs62131974229046814TRMT61BENSG00000171103.61.687E-60.0146353gtex_brain_putamen_basal
rs62131975229046908TRMT61BENSG00000171103.62.586E-60.0146259gtex_brain_putamen_basal
rs61407258229046909TRMT61BENSG00000171103.62.163E-60.0146258gtex_brain_putamen_basal
rs6718662229048758TRMT61BENSG00000171103.61.688E-60.0144409gtex_brain_putamen_basal
rs10865508229053704TRMT61BENSG00000171103.69.095E-70.0139463gtex_brain_putamen_basal
rs12714249229055916TRMT61BENSG00000171103.62.339E-60.0137251gtex_brain_putamen_basal
rs11685682229056801TRMT61BENSG00000171103.61.185E-60.0136366gtex_brain_putamen_basal
rs67410623229057440TRMT61BENSG00000171103.61.226E-60.0135727gtex_brain_putamen_basal
rs10166861229061111TRMT61BENSG00000171103.61.791E-60.0132056gtex_brain_putamen_basal
rs56789675229062249TRMT61BENSG00000171103.61.942E-60.0130918gtex_brain_putamen_basal
rs4611608229064536TRMT61BENSG00000171103.61.792E-60.0128631gtex_brain_putamen_basal
rs4632298229076282TRMT61BENSG00000171103.61.988E-60.0116885gtex_brain_putamen_basal
rs66904522229080892TRMT61BENSG00000171103.62.39E-60.0112275gtex_brain_putamen_basal
rs57286839229084934TRMT61BENSG00000171103.62.13E-60.018233gtex_brain_putamen_basal
rs55785599229087814TRMT61BENSG00000171103.61.26E-60.015353gtex_brain_putamen_basal
rs11684695229088450TRMT61BENSG00000171103.62.31E-60.014717gtex_brain_putamen_basal
rs4665436229090227TRMT61BENSG00000171103.62.127E-60.012940gtex_brain_putamen_basal
rs4233729229092679TRMT61BENSG00000171103.61.288E-60.01488gtex_brain_putamen_basal
rs4666122229092850TRMT61BENSG00000171103.61.288E-60.01317gtex_brain_putamen_basal
rs4563180229093695TRMT61BENSG00000171103.61.431E-60.01-528gtex_brain_putamen_basal
rs4638745229093803TRMT61BENSG00000171103.61.033E-60.01-636gtex_brain_putamen_basal
rs34611659229094722TRMT61BENSG00000171103.61.374E-60.01-1555gtex_brain_putamen_basal

Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

No co-expressed genes in brain regions


Section V. Pathway annotation

Pathway namePathway size# SZGR 2.0 genes in pathwayInfo
ZHOU INFLAMMATORY RESPONSE LIVE DN 384220All SZGR 2.0 genes in this pathway
TIEN INTESTINE PROBIOTICS 24HR UP 557331All SZGR 2.0 genes in this pathway
KINSEY TARGETS OF EWSR1 FLII FUSION UP 1278748All SZGR 2.0 genes in this pathway
DODD NASOPHARYNGEAL CARCINOMA DN 1375806All SZGR 2.0 genes in this pathway
VANHARANTA UTERINE FIBROID WITH 7Q DELETION UP 6737All SZGR 2.0 genes in this pathway
LASTOWSKA COAMPLIFIED WITH MYCN 4329All SZGR 2.0 genes in this pathway
GALE APL WITH FLT3 MUTATED UP 5635All SZGR 2.0 genes in this pathway
ACEVEDO LIVER CANCER UP 973570All SZGR 2.0 genes in this pathway