Gene Page: NOP10
Summary ?
| GeneID | 55505 |
| Symbol | NOP10 |
| Synonyms | DKCB1|NOLA3|NOP10P |
| Description | NOP10 ribonucleoprotein |
| Reference | MIM:606471|HGNC:HGNC:14378|Ensembl:ENSG00000182117|HPRD:07571|Vega:OTTHUMG00000129440 |
| Gene type | protein-coding |
| Map location | 15q14-q15 |
| Pascal p-value | 0.04 |
| Sherlock p-value | 0.101 |
| eGene | Anterior cingulate cortex BA24 Caudate basal ganglia Cerebellar Hemisphere Cerebellum Cortex Frontal Cortex BA9 Hippocampus Hypothalamus Nucleus accumbens basal ganglia Putamen basal ganglia |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:PGCnp | Genome-wide Association Study | GWAS |
Section I. Genetics and epigenetics annotation
eQTL annotation
| SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
|---|---|---|---|---|---|---|---|---|
| rs56207527 | 15 | 34548034 | NOP10 | ENSG00000182117.4 | 7.098E-7 | 0 | 87344 | gtex_brain_ba24 |
| rs7181260 | 15 | 34556421 | NOP10 | ENSG00000182117.4 | 7.081E-7 | 0 | 78957 | gtex_brain_ba24 |
| rs56388838 | 15 | 34558369 | NOP10 | ENSG00000182117.4 | 7.074E-7 | 0 | 77009 | gtex_brain_ba24 |
| rs73390084 | 15 | 34564536 | NOP10 | ENSG00000182117.4 | 5.007E-9 | 0 | 70842 | gtex_brain_ba24 |
| rs16958910 | 15 | 34564554 | NOP10 | ENSG00000182117.4 | 5.007E-9 | 0 | 70824 | gtex_brain_ba24 |
| rs2126421 | 15 | 34565514 | NOP10 | ENSG00000182117.4 | 5.007E-9 | 0 | 69864 | gtex_brain_ba24 |
| rs59802332 | 15 | 34571487 | NOP10 | ENSG00000182117.4 | 5.007E-9 | 0 | 63891 | gtex_brain_ba24 |
| rs12591967 | 15 | 34574330 | NOP10 | ENSG00000182117.4 | 5.007E-9 | 0 | 61048 | gtex_brain_ba24 |
| rs7495538 | 15 | 34575592 | NOP10 | ENSG00000182117.4 | 5.03E-9 | 0 | 59786 | gtex_brain_ba24 |
| rs73392004 | 15 | 34577737 | NOP10 | ENSG00000182117.4 | 4.987E-9 | 0 | 57641 | gtex_brain_ba24 |
| rs7163919 | 15 | 34578745 | NOP10 | ENSG00000182117.4 | 4.987E-9 | 0 | 56633 | gtex_brain_ba24 |
| rs111645820 | 15 | 34580876 | NOP10 | ENSG00000182117.4 | 4.984E-9 | 0 | 54502 | gtex_brain_ba24 |
| rs16958954 | 15 | 34590847 | NOP10 | ENSG00000182117.4 | 4.997E-9 | 0 | 44531 | gtex_brain_ba24 |
| rs57875866 | 15 | 34601945 | NOP10 | ENSG00000182117.4 | 4.985E-9 | 0 | 33433 | gtex_brain_ba24 |
| rs57715165 | 15 | 34603586 | NOP10 | ENSG00000182117.4 | 4.64E-9 | 0 | 31792 | gtex_brain_ba24 |
| rs73374434 | 15 | 34604447 | NOP10 | ENSG00000182117.4 | 5.007E-9 | 0 | 30931 | gtex_brain_ba24 |
| rs8043005 | 15 | 34611666 | NOP10 | ENSG00000182117.4 | 5.007E-9 | 0 | 23712 | gtex_brain_ba24 |
| rs8025057 | 15 | 34612331 | NOP10 | ENSG00000182117.4 | 5.007E-9 | 0 | 23047 | gtex_brain_ba24 |
| rs6495660 | 15 | 34612472 | NOP10 | ENSG00000182117.4 | 4.68E-8 | 0 | 22906 | gtex_brain_ba24 |
| rs8028600 | 15 | 34612717 | NOP10 | ENSG00000182117.4 | 1.897E-8 | 0 | 22661 | gtex_brain_ba24 |
| rs28539755 | 15 | 34613097 | NOP10 | ENSG00000182117.4 | 2.153E-7 | 0 | 22281 | gtex_brain_ba24 |
| rs16958995 | 15 | 34613244 | NOP10 | ENSG00000182117.4 | 3.281E-8 | 0 | 22134 | gtex_brain_ba24 |
| rs7176009 | 15 | 34614016 | NOP10 | ENSG00000182117.4 | 2.194E-7 | 0 | 21362 | gtex_brain_ba24 |
| rs7175028 | 15 | 34614214 | NOP10 | ENSG00000182117.4 | 3.281E-8 | 0 | 21164 | gtex_brain_ba24 |
| rs7176426 | 15 | 34614257 | NOP10 | ENSG00000182117.4 | 2.201E-7 | 0 | 21121 | gtex_brain_ba24 |
| rs113271515 | 15 | 34614996 | NOP10 | ENSG00000182117.4 | 2.468E-7 | 0 | 20382 | gtex_brain_ba24 |
| rs9630418 | 15 | 34615924 | NOP10 | ENSG00000182117.4 | 2.251E-7 | 0 | 19454 | gtex_brain_ba24 |
| rs55745608 | 15 | 34615943 | NOP10 | ENSG00000182117.4 | 2.251E-7 | 0 | 19435 | gtex_brain_ba24 |
| rs60277411 | 15 | 34616825 | NOP10 | ENSG00000182117.4 | 4.102E-8 | 0 | 18553 | gtex_brain_ba24 |
| rs9972305 | 15 | 34617565 | NOP10 | ENSG00000182117.4 | 2.287E-7 | 0 | 17813 | gtex_brain_ba24 |
| rs9972323 | 15 | 34617575 | NOP10 | ENSG00000182117.4 | 2.287E-7 | 0 | 17803 | gtex_brain_ba24 |
| rs8023583 | 15 | 34618138 | NOP10 | ENSG00000182117.4 | 5.007E-9 | 0 | 17240 | gtex_brain_ba24 |
| rs113879836 | 15 | 34618944 | NOP10 | ENSG00000182117.4 | 5.007E-9 | 0 | 16434 | gtex_brain_ba24 |
| rs924065 | 15 | 34619455 | NOP10 | ENSG00000182117.4 | 5.007E-9 | 0 | 15923 | gtex_brain_ba24 |
| rs59452641 | 15 | 34620962 | NOP10 | ENSG00000182117.4 | 5.007E-9 | 0 | 14416 | gtex_brain_ba24 |
| rs58343025 | 15 | 34620998 | NOP10 | ENSG00000182117.4 | 2.789E-7 | 0 | 14380 | gtex_brain_ba24 |
| rs60156693 | 15 | 34621175 | NOP10 | ENSG00000182117.4 | 2.911E-7 | 0 | 14203 | gtex_brain_ba24 |
| rs8031145 | 15 | 34621381 | NOP10 | ENSG00000182117.4 | 3.051E-7 | 0 | 13997 | gtex_brain_ba24 |
| rs8031147 | 15 | 34621584 | NOP10 | ENSG00000182117.4 | 3.154E-7 | 0 | 13794 | gtex_brain_ba24 |
| rs73374473 | 15 | 34622379 | NOP10 | ENSG00000182117.4 | 3.232E-7 | 0 | 12999 | gtex_brain_ba24 |
| rs73374475 | 15 | 34622418 | NOP10 | ENSG00000182117.4 | 3.313E-8 | 0 | 12960 | gtex_brain_ba24 |
| rs8037379 | 15 | 34622872 | NOP10 | ENSG00000182117.4 | 3.369E-8 | 0 | 12506 | gtex_brain_ba24 |
| rs11378922 | 15 | 34622890 | NOP10 | ENSG00000182117.4 | 4.713E-7 | 0 | 12488 | gtex_brain_ba24 |
| rs8042163 | 15 | 34623103 | NOP10 | ENSG00000182117.4 | 3.313E-7 | 0 | 12275 | gtex_brain_ba24 |
| rs11378923 | 15 | 34623236 | NOP10 | ENSG00000182117.4 | 1.895E-7 | 0 | 12142 | gtex_brain_ba24 |
| rs73374477 | 15 | 34623461 | NOP10 | ENSG00000182117.4 | 3.439E-8 | 0 | 11917 | gtex_brain_ba24 |
| rs16959012 | 15 | 34623740 | NOP10 | ENSG00000182117.4 | 3.392E-7 | 0 | 11638 | gtex_brain_ba24 |
| rs7166066 | 15 | 34623839 | NOP10 | ENSG00000182117.4 | 3.407E-7 | 0 | 11539 | gtex_brain_ba24 |
| rs16959014 | 15 | 34624348 | NOP10 | ENSG00000182117.4 | 3.577E-8 | 0 | 11030 | gtex_brain_ba24 |
| rs16959020 | 15 | 34624498 | NOP10 | ENSG00000182117.4 | 3.508E-7 | 0 | 10880 | gtex_brain_ba24 |
| rs8031958 | 15 | 34625489 | NOP10 | ENSG00000182117.4 | 3.082E-10 | 0 | 9889 | gtex_brain_ba24 |
| rs8033032 | 15 | 34626140 | NOP10 | ENSG00000182117.4 | 6.711E-9 | 0 | 9238 | gtex_brain_ba24 |
| rs16959021 | 15 | 34626807 | NOP10 | ENSG00000182117.4 | 8.15E-8 | 0 | 8571 | gtex_brain_ba24 |
| rs7163195 | 15 | 34627152 | NOP10 | ENSG00000182117.4 | 8.475E-8 | 0 | 8226 | gtex_brain_ba24 |
| rs73374490 | 15 | 34629024 | NOP10 | ENSG00000182117.4 | 1.557E-7 | 0 | 6354 | gtex_brain_ba24 |
| rs73374491 | 15 | 34629096 | NOP10 | ENSG00000182117.4 | 7.292E-9 | 0 | 6282 | gtex_brain_ba24 |
| rs73374493 | 15 | 34629167 | NOP10 | ENSG00000182117.4 | 6.828E-9 | 0 | 6211 | gtex_brain_ba24 |
| rs6495661 | 15 | 34630397 | NOP10 | ENSG00000182117.4 | 3.852E-10 | 0 | 4981 | gtex_brain_ba24 |
| rs6495662 | 15 | 34630582 | NOP10 | ENSG00000182117.4 | 3.837E-10 | 0 | 4796 | gtex_brain_ba24 |
| rs10603445 | 15 | 34630691 | NOP10 | ENSG00000182117.4 | 3.779E-10 | 0 | 4687 | gtex_brain_ba24 |
| rs1845773 | 15 | 34630886 | NOP10 | ENSG00000182117.4 | 3.745E-10 | 0 | 4492 | gtex_brain_ba24 |
| rs56057955 | 15 | 34631927 | NOP10 | ENSG00000182117.4 | 2.117E-11 | 0 | 3451 | gtex_brain_ba24 |
| rs371596776 | 15 | 34632277 | NOP10 | ENSG00000182117.4 | 4.269E-9 | 0 | 3101 | gtex_brain_ba24 |
| rs72486679 | 15 | 34632357 | NOP10 | ENSG00000182117.4 | 3.708E-10 | 0 | 3021 | gtex_brain_ba24 |
| rs73374500 | 15 | 34632686 | NOP10 | ENSG00000182117.4 | 1.423E-11 | 0 | 2692 | gtex_brain_ba24 |
| rs7182584 | 15 | 34632816 | NOP10 | ENSG00000182117.4 | 3.683E-10 | 0 | 2562 | gtex_brain_ba24 |
| rs2219668 | 15 | 34632857 | NOP10 | ENSG00000182117.4 | 3.679E-10 | 0 | 2521 | gtex_brain_ba24 |
| rs4569235 | 15 | 34633328 | NOP10 | ENSG00000182117.4 | 3.653E-10 | 0 | 2050 | gtex_brain_ba24 |
| rs73374502 | 15 | 34633422 | NOP10 | ENSG00000182117.4 | 3.649E-10 | 0 | 1956 | gtex_brain_ba24 |
| rs74244096 | 15 | 34633476 | NOP10 | ENSG00000182117.4 | 1.329E-11 | 0 | 1902 | gtex_brain_ba24 |
| rs56762274 | 15 | 34633603 | NOP10 | ENSG00000182117.4 | 3.637E-10 | 0 | 1775 | gtex_brain_ba24 |
| rs59861881 | 15 | 34633667 | NOP10 | ENSG00000182117.4 | 1.412E-11 | 0 | 1711 | gtex_brain_ba24 |
| rs554185002 | 15 | 34633685 | NOP10 | ENSG00000182117.4 | 8.457E-10 | 0 | 1693 | gtex_brain_ba24 |
| rs201455174 | 15 | 34633699 | NOP10 | ENSG00000182117.4 | 1.352E-11 | 0 | 1679 | gtex_brain_ba24 |
| rs3063 | 15 | 34634033 | NOP10 | ENSG00000182117.4 | 3.597E-10 | 0 | 1345 | gtex_brain_ba24 |
| rs1045238 | 15 | 34634124 | NOP10 | ENSG00000182117.4 | 3.593E-10 | 0 | 1254 | gtex_brain_ba24 |
| rs1045204 | 15 | 34634138 | NOP10 | ENSG00000182117.4 | 5.49E-11 | 0 | 1240 | gtex_brain_ba24 |
| rs1045194 | 15 | 34634139 | NOP10 | ENSG00000182117.4 | 2.478E-9 | 0 | 1239 | gtex_brain_ba24 |
| rs34639726 | 15 | 34634501 | NOP10 | ENSG00000182117.4 | 1.003E-11 | 0 | 877 | gtex_brain_ba24 |
| rs12593384 | 15 | 34634626 | NOP10 | ENSG00000182117.4 | 3.598E-10 | 0 | 752 | gtex_brain_ba24 |
| rs73376010 | 15 | 34635863 | NOP10 | ENSG00000182117.4 | 3.031E-10 | 0 | -485 | gtex_brain_ba24 |
| rs7169857 | 15 | 34636734 | NOP10 | ENSG00000182117.4 | 1.09E-11 | 0 | -1356 | gtex_brain_ba24 |
| rs11461274 | 15 | 34637217 | NOP10 | ENSG00000182117.4 | 2.426E-11 | 0 | -1839 | gtex_brain_ba24 |
| rs7170785 | 15 | 34637230 | NOP10 | ENSG00000182117.4 | 1.09E-11 | 0 | -1852 | gtex_brain_ba24 |
| rs8031404 | 15 | 34637696 | NOP10 | ENSG00000182117.4 | 1.09E-11 | 0 | -2318 | gtex_brain_ba24 |
| rs8032347 | 15 | 34637903 | NOP10 | ENSG00000182117.4 | 1.006E-11 | 0 | -2525 | gtex_brain_ba24 |
| rs8031961 | 15 | 34638030 | NOP10 | ENSG00000182117.4 | 3.412E-12 | 0 | -2652 | gtex_brain_ba24 |
| rs12595504 | 15 | 34638198 | NOP10 | ENSG00000182117.4 | 2.958E-12 | 0 | -2820 | gtex_brain_ba24 |
| rs12592913 | 15 | 34638342 | NOP10 | ENSG00000182117.4 | 2.786E-12 | 0 | -2964 | gtex_brain_ba24 |
| rs74244098 | 15 | 34638784 | NOP10 | ENSG00000182117.4 | 3.172E-12 | 0 | -3406 | gtex_brain_ba24 |
| rs59375529 | 15 | 34639755 | NOP10 | ENSG00000182117.4 | 1.174E-8 | 0 | -4377 | gtex_brain_ba24 |
| rs59336574 | 15 | 34639823 | NOP10 | ENSG00000182117.4 | 3.892E-8 | 0 | -4445 | gtex_brain_ba24 |
| rs58934096 | 15 | 34639826 | NOP10 | ENSG00000182117.4 | 3.895E-8 | 0 | -4448 | gtex_brain_ba24 |
| rs58261770 | 15 | 34639879 | NOP10 | ENSG00000182117.4 | 4.859E-8 | 0 | -4501 | gtex_brain_ba24 |
| rs58401365 | 15 | 34639904 | NOP10 | ENSG00000182117.4 | 5.013E-8 | 0 | -4526 | gtex_brain_ba24 |
| rs73378128 | 15 | 34466925 | NOP10 | ENSG00000182117.4 | 2.134E-6 | 0 | 168453 | gtex_brain_putamen_basal |
| rs7174442 | 15 | 34467672 | NOP10 | ENSG00000182117.4 | 2.155E-6 | 0 | 167706 | gtex_brain_putamen_basal |
| rs73378138 | 15 | 34469648 | NOP10 | ENSG00000182117.4 | 2.119E-6 | 0 | 165730 | gtex_brain_putamen_basal |
| rs11852537 | 15 | 34470359 | NOP10 | ENSG00000182117.4 | 2.104E-6 | 0 | 165019 | gtex_brain_putamen_basal |
| rs11857684 | 15 | 34471383 | NOP10 | ENSG00000182117.4 | 2.026E-6 | 0 | 163995 | gtex_brain_putamen_basal |
| rs60749797 | 15 | 34472196 | NOP10 | ENSG00000182117.4 | 2.021E-6 | 0 | 163182 | gtex_brain_putamen_basal |
| rs28538047 | 15 | 34472873 | NOP10 | ENSG00000182117.4 | 2.017E-6 | 0 | 162505 | gtex_brain_putamen_basal |
| rs1978810 | 15 | 34474195 | NOP10 | ENSG00000182117.4 | 1.283E-6 | 0 | 161183 | gtex_brain_putamen_basal |
| rs11857205 | 15 | 34475142 | NOP10 | ENSG00000182117.4 | 1.283E-6 | 0 | 160236 | gtex_brain_putamen_basal |
| rs11854686 | 15 | 34475199 | NOP10 | ENSG00000182117.4 | 1.283E-6 | 0 | 160179 | gtex_brain_putamen_basal |
| rs112449605 | 15 | 34476547 | NOP10 | ENSG00000182117.4 | 1.125E-6 | 0 | 158831 | gtex_brain_putamen_basal |
| rs200129001 | 15 | 34476780 | NOP10 | ENSG00000182117.4 | 8.044E-7 | 0 | 158598 | gtex_brain_putamen_basal |
| rs56731918 | 15 | 34478465 | NOP10 | ENSG00000182117.4 | 1.283E-6 | 0 | 156913 | gtex_brain_putamen_basal |
| rs8027830 | 15 | 34479217 | NOP10 | ENSG00000182117.4 | 1.283E-6 | 0 | 156161 | gtex_brain_putamen_basal |
| rs9972505 | 15 | 34480912 | NOP10 | ENSG00000182117.4 | 1.283E-6 | 0 | 154466 | gtex_brain_putamen_basal |
| rs8034315 | 15 | 34481477 | NOP10 | ENSG00000182117.4 | 1.283E-6 | 0 | 153901 | gtex_brain_putamen_basal |
| rs7178988 | 15 | 34482862 | NOP10 | ENSG00000182117.4 | 1.283E-6 | 0 | 152516 | gtex_brain_putamen_basal |
| rs7181687 | 15 | 34483211 | NOP10 | ENSG00000182117.4 | 1.283E-6 | 0 | 152167 | gtex_brain_putamen_basal |
| rs7181902 | 15 | 34483333 | NOP10 | ENSG00000182117.4 | 1.283E-6 | 0 | 152045 | gtex_brain_putamen_basal |
| rs58875083 | 15 | 34483887 | NOP10 | ENSG00000182117.4 | 1.283E-6 | 0 | 151491 | gtex_brain_putamen_basal |
| rs11852460 | 15 | 34485253 | NOP10 | ENSG00000182117.4 | 1.558E-6 | 0 | 150125 | gtex_brain_putamen_basal |
| rs28652966 | 15 | 34486827 | NOP10 | ENSG00000182117.4 | 1.283E-6 | 0 | 148551 | gtex_brain_putamen_basal |
| rs142997558 | 15 | 34487363 | NOP10 | ENSG00000182117.4 | 2.097E-6 | 0 | 148015 | gtex_brain_putamen_basal |
| rs61054243 | 15 | 34507832 | NOP10 | ENSG00000182117.4 | 5.696E-7 | 0 | 127546 | gtex_brain_putamen_basal |
| rs112118684 | 15 | 34509480 | NOP10 | ENSG00000182117.4 | 4.396E-7 | 0 | 125898 | gtex_brain_putamen_basal |
| rs57626952 | 15 | 34512614 | NOP10 | ENSG00000182117.4 | 2.298E-7 | 0 | 122764 | gtex_brain_putamen_basal |
| rs113296974 | 15 | 34514229 | NOP10 | ENSG00000182117.4 | 2.298E-7 | 0 | 121149 | gtex_brain_putamen_basal |
| rs77899885 | 15 | 34514369 | NOP10 | ENSG00000182117.4 | 2.298E-7 | 0 | 121009 | gtex_brain_putamen_basal |
| rs73386033 | 15 | 34515969 | NOP10 | ENSG00000182117.4 | 2.298E-7 | 0 | 119409 | gtex_brain_putamen_basal |
| rs73386037 | 15 | 34516002 | NOP10 | ENSG00000182117.4 | 2.298E-7 | 0 | 119376 | gtex_brain_putamen_basal |
| rs146829090 | 15 | 34516429 | NOP10 | ENSG00000182117.4 | 2.298E-7 | 0 | 118949 | gtex_brain_putamen_basal |
| rs73386038 | 15 | 34516680 | NOP10 | ENSG00000182117.4 | 2.298E-7 | 0 | 118698 | gtex_brain_putamen_basal |
| rs59023791 | 15 | 34516995 | NOP10 | ENSG00000182117.4 | 2.298E-7 | 0 | 118383 | gtex_brain_putamen_basal |
| rs140494305 | 15 | 34519234 | NOP10 | ENSG00000182117.4 | 2.298E-7 | 0 | 116144 | gtex_brain_putamen_basal |
| rs201968639 | 15 | 34522107 | NOP10 | ENSG00000182117.4 | 2.298E-7 | 0 | 113271 | gtex_brain_putamen_basal |
| rs71702457 | 15 | 34522108 | NOP10 | ENSG00000182117.4 | 2.298E-7 | 0 | 113270 | gtex_brain_putamen_basal |
| rs1133154 | 15 | 34522557 | NOP10 | ENSG00000182117.4 | 2.298E-7 | 0 | 112821 | gtex_brain_putamen_basal |
| rs59091709 | 15 | 34523278 | NOP10 | ENSG00000182117.4 | 2.298E-7 | 0 | 112100 | gtex_brain_putamen_basal |
| rs140566497 | 15 | 34523563 | NOP10 | ENSG00000182117.4 | 8.464E-7 | 0 | 111815 | gtex_brain_putamen_basal |
| rs61577073 | 15 | 34524117 | NOP10 | ENSG00000182117.4 | 2.294E-7 | 0 | 111261 | gtex_brain_putamen_basal |
| rs6495639 | 15 | 34524236 | NOP10 | ENSG00000182117.4 | 2.298E-7 | 0 | 111142 | gtex_brain_putamen_basal |
| rs111930900 | 15 | 34527713 | NOP10 | ENSG00000182117.4 | 2.298E-7 | 0 | 107665 | gtex_brain_putamen_basal |
| rs73388027 | 15 | 34528588 | NOP10 | ENSG00000182117.4 | 2.298E-7 | 0 | 106790 | gtex_brain_putamen_basal |
| rs16958878 | 15 | 34534723 | NOP10 | ENSG00000182117.4 | 2.298E-7 | 0 | 100655 | gtex_brain_putamen_basal |
| rs112814759 | 15 | 34535245 | NOP10 | ENSG00000182117.4 | 2.298E-7 | 0 | 100133 | gtex_brain_putamen_basal |
| rs112979791 | 15 | 34535283 | NOP10 | ENSG00000182117.4 | 2.373E-7 | 0 | 100095 | gtex_brain_putamen_basal |
| rs59209438 | 15 | 34536090 | NOP10 | ENSG00000182117.4 | 2.298E-7 | 0 | 99288 | gtex_brain_putamen_basal |
| rs4238572 | 15 | 34538560 | NOP10 | ENSG00000182117.4 | 2.279E-7 | 0 | 96818 | gtex_brain_putamen_basal |
| rs73388049 | 15 | 34540582 | NOP10 | ENSG00000182117.4 | 2.298E-7 | 0 | 94796 | gtex_brain_putamen_basal |
| rs61549125 | 15 | 34542730 | NOP10 | ENSG00000182117.4 | 2.298E-7 | 0 | 92648 | gtex_brain_putamen_basal |
| rs56761496 | 15 | 34542739 | NOP10 | ENSG00000182117.4 | 2.298E-7 | 0 | 92639 | gtex_brain_putamen_basal |
| rs56207527 | 15 | 34548034 | NOP10 | ENSG00000182117.4 | 2.511E-9 | 0 | 87344 | gtex_brain_putamen_basal |
| rs7181260 | 15 | 34556421 | NOP10 | ENSG00000182117.4 | 1.153E-9 | 0 | 78957 | gtex_brain_putamen_basal |
| rs56388838 | 15 | 34558369 | NOP10 | ENSG00000182117.4 | 1.151E-9 | 0 | 77009 | gtex_brain_putamen_basal |
| rs73390084 | 15 | 34564536 | NOP10 | ENSG00000182117.4 | 1.149E-9 | 0 | 70842 | gtex_brain_putamen_basal |
| rs16958910 | 15 | 34564554 | NOP10 | ENSG00000182117.4 | 1.149E-9 | 0 | 70824 | gtex_brain_putamen_basal |
| rs2126421 | 15 | 34565514 | NOP10 | ENSG00000182117.4 | 1.149E-9 | 0 | 69864 | gtex_brain_putamen_basal |
| rs59802332 | 15 | 34571487 | NOP10 | ENSG00000182117.4 | 1.149E-9 | 0 | 63891 | gtex_brain_putamen_basal |
| rs12591967 | 15 | 34574330 | NOP10 | ENSG00000182117.4 | 1.149E-9 | 0 | 61048 | gtex_brain_putamen_basal |
| rs7495538 | 15 | 34575592 | NOP10 | ENSG00000182117.4 | 1.152E-9 | 0 | 59786 | gtex_brain_putamen_basal |
| rs73392004 | 15 | 34577737 | NOP10 | ENSG00000182117.4 | 1.148E-9 | 0 | 57641 | gtex_brain_putamen_basal |
| rs7163919 | 15 | 34578745 | NOP10 | ENSG00000182117.4 | 1.148E-9 | 0 | 56633 | gtex_brain_putamen_basal |
| rs111645820 | 15 | 34580876 | NOP10 | ENSG00000182117.4 | 1.148E-9 | 0 | 54502 | gtex_brain_putamen_basal |
| rs16958954 | 15 | 34590847 | NOP10 | ENSG00000182117.4 | 4.132E-9 | 0 | 44531 | gtex_brain_putamen_basal |
| rs57875866 | 15 | 34601945 | NOP10 | ENSG00000182117.4 | 1.149E-9 | 0 | 33433 | gtex_brain_putamen_basal |
| rs57715165 | 15 | 34603586 | NOP10 | ENSG00000182117.4 | 1.191E-9 | 0 | 31792 | gtex_brain_putamen_basal |
| rs73374434 | 15 | 34604447 | NOP10 | ENSG00000182117.4 | 1.149E-9 | 0 | 30931 | gtex_brain_putamen_basal |
| rs8043005 | 15 | 34611666 | NOP10 | ENSG00000182117.4 | 1.149E-9 | 0 | 23712 | gtex_brain_putamen_basal |
| rs8025057 | 15 | 34612331 | NOP10 | ENSG00000182117.4 | 1.149E-9 | 0 | 23047 | gtex_brain_putamen_basal |
| rs6495660 | 15 | 34612472 | NOP10 | ENSG00000182117.4 | 3.802E-10 | 0 | 22906 | gtex_brain_putamen_basal |
| rs8028600 | 15 | 34612717 | NOP10 | ENSG00000182117.4 | 9.757E-8 | 0 | 22661 | gtex_brain_putamen_basal |
| rs60308261 | 15 | 34613002 | NOP10 | ENSG00000182117.4 | 4.735E-9 | 0 | 22376 | gtex_brain_putamen_basal |
| rs28539755 | 15 | 34613097 | NOP10 | ENSG00000182117.4 | 1.294E-9 | 0 | 22281 | gtex_brain_putamen_basal |
| rs16958995 | 15 | 34613244 | NOP10 | ENSG00000182117.4 | 3.03E-10 | 0 | 22134 | gtex_brain_putamen_basal |
| rs7176009 | 15 | 34614016 | NOP10 | ENSG00000182117.4 | 1.315E-9 | 0 | 21362 | gtex_brain_putamen_basal |
| rs7175028 | 15 | 34614214 | NOP10 | ENSG00000182117.4 | 3.03E-10 | 0 | 21164 | gtex_brain_putamen_basal |
| rs7176426 | 15 | 34614257 | NOP10 | ENSG00000182117.4 | 1.318E-9 | 0 | 21121 | gtex_brain_putamen_basal |
| rs380248 | 15 | 34614410 | NOP10 | ENSG00000182117.4 | 6.28E-8 | 0 | 20968 | gtex_brain_putamen_basal |
| rs200131678 | 15 | 34614866 | NOP10 | ENSG00000182117.4 | 5.989E-9 | 0 | 20512 | gtex_brain_putamen_basal |
| rs60770299 | 15 | 34614867 | NOP10 | ENSG00000182117.4 | 6.355E-9 | 0 | 20511 | gtex_brain_putamen_basal |
| rs61376537 | 15 | 34614868 | NOP10 | ENSG00000182117.4 | 6.355E-9 | 0 | 20510 | gtex_brain_putamen_basal |
| rs113271515 | 15 | 34614996 | NOP10 | ENSG00000182117.4 | 1.436E-9 | 0 | 20382 | gtex_brain_putamen_basal |
| rs73374455 | 15 | 34615384 | NOP10 | ENSG00000182117.4 | 1.445E-9 | 0 | 19994 | gtex_brain_putamen_basal |
| rs9630418 | 15 | 34615924 | NOP10 | ENSG00000182117.4 | 1.341E-9 | 0 | 19454 | gtex_brain_putamen_basal |
| rs55745608 | 15 | 34615943 | NOP10 | ENSG00000182117.4 | 1.341E-9 | 0 | 19435 | gtex_brain_putamen_basal |
| rs60277411 | 15 | 34616825 | NOP10 | ENSG00000182117.4 | 1.127E-9 | 0 | 18553 | gtex_brain_putamen_basal |
| rs9972305 | 15 | 34617565 | NOP10 | ENSG00000182117.4 | 1.36E-9 | 0 | 17813 | gtex_brain_putamen_basal |
| rs9972323 | 15 | 34617575 | NOP10 | ENSG00000182117.4 | 1.36E-9 | 0 | 17803 | gtex_brain_putamen_basal |
| rs8023583 | 15 | 34618138 | NOP10 | ENSG00000182117.4 | 1.149E-9 | 0 | 17240 | gtex_brain_putamen_basal |
| rs113879836 | 15 | 34618944 | NOP10 | ENSG00000182117.4 | 1.149E-9 | 0 | 16434 | gtex_brain_putamen_basal |
| rs186987 | 15 | 34619349 | NOP10 | ENSG00000182117.4 | 6.502E-8 | 0 | 16029 | gtex_brain_putamen_basal |
| rs924065 | 15 | 34619455 | NOP10 | ENSG00000182117.4 | 1.149E-9 | 0 | 15923 | gtex_brain_putamen_basal |
| rs347831 | 15 | 34619785 | NOP10 | ENSG00000182117.4 | 6.59E-8 | 0 | 15593 | gtex_brain_putamen_basal |
| rs347832 | 15 | 34619813 | NOP10 | ENSG00000182117.4 | 6.508E-8 | 0 | 15565 | gtex_brain_putamen_basal |
| rs347833 | 15 | 34619823 | NOP10 | ENSG00000182117.4 | 6.515E-8 | 0 | 15555 | gtex_brain_putamen_basal |
| rs347834 | 15 | 34620436 | NOP10 | ENSG00000182117.4 | 6.553E-8 | 0 | 14942 | gtex_brain_putamen_basal |
| rs59452641 | 15 | 34620962 | NOP10 | ENSG00000182117.4 | 1.149E-9 | 0 | 14416 | gtex_brain_putamen_basal |
| rs58343025 | 15 | 34620998 | NOP10 | ENSG00000182117.4 | 1.603E-9 | 0 | 14380 | gtex_brain_putamen_basal |
| rs180886 | 15 | 34621036 | NOP10 | ENSG00000182117.4 | 7.281E-8 | 0 | 14342 | gtex_brain_putamen_basal |
| rs60156693 | 15 | 34621175 | NOP10 | ENSG00000182117.4 | 1.661E-9 | 0 | 14203 | gtex_brain_putamen_basal |
| rs8031145 | 15 | 34621381 | NOP10 | ENSG00000182117.4 | 1.727E-9 | 0 | 13997 | gtex_brain_putamen_basal |
| rs8031147 | 15 | 34621584 | NOP10 | ENSG00000182117.4 | 1.776E-9 | 0 | 13794 | gtex_brain_putamen_basal |
| rs73374473 | 15 | 34622379 | NOP10 | ENSG00000182117.4 | 2.053E-9 | 0 | 12999 | gtex_brain_putamen_basal |
| rs73374475 | 15 | 34622418 | NOP10 | ENSG00000182117.4 | 3.539E-10 | 0 | 12960 | gtex_brain_putamen_basal |
| rs8037379 | 15 | 34622872 | NOP10 | ENSG00000182117.4 | 3.727E-10 | 0 | 12506 | gtex_brain_putamen_basal |
| rs11378922 | 15 | 34622890 | NOP10 | ENSG00000182117.4 | 1.788E-9 | 0 | 12488 | gtex_brain_putamen_basal |
| rs8042163 | 15 | 34623103 | NOP10 | ENSG00000182117.4 | 2.215E-9 | 0 | 12275 | gtex_brain_putamen_basal |
| rs11378923 | 15 | 34623236 | NOP10 | ENSG00000182117.4 | 1.415E-9 | 0 | 12142 | gtex_brain_putamen_basal |
| rs73374477 | 15 | 34623461 | NOP10 | ENSG00000182117.4 | 3.939E-10 | 0 | 11917 | gtex_brain_putamen_basal |
| rs16959012 | 15 | 34623740 | NOP10 | ENSG00000182117.4 | 2.344E-9 | 0 | 11638 | gtex_brain_putamen_basal |
| rs7166066 | 15 | 34623839 | NOP10 | ENSG00000182117.4 | 2.367E-9 | 0 | 11539 | gtex_brain_putamen_basal |
| rs16959014 | 15 | 34624348 | NOP10 | ENSG00000182117.4 | 4.312E-10 | 0 | 11030 | gtex_brain_putamen_basal |
| rs16959020 | 15 | 34624498 | NOP10 | ENSG00000182117.4 | 2.524E-9 | 0 | 10880 | gtex_brain_putamen_basal |
| rs8031958 | 15 | 34625489 | NOP10 | ENSG00000182117.4 | 3.224E-9 | 0 | 9889 | gtex_brain_putamen_basal |
| rs8033032 | 15 | 34626140 | NOP10 | ENSG00000182117.4 | 2.645E-9 | 0 | 9238 | gtex_brain_putamen_basal |
| rs16959021 | 15 | 34626807 | NOP10 | ENSG00000182117.4 | 1.076E-8 | 0 | 8571 | gtex_brain_putamen_basal |
| rs7163195 | 15 | 34627152 | NOP10 | ENSG00000182117.4 | 1.526E-8 | 0 | 8226 | gtex_brain_putamen_basal |
| rs73374490 | 15 | 34629024 | NOP10 | ENSG00000182117.4 | 8.074E-8 | 0 | 6354 | gtex_brain_putamen_basal |
| rs73374491 | 15 | 34629096 | NOP10 | ENSG00000182117.4 | 1.331E-9 | 0 | 6282 | gtex_brain_putamen_basal |
| rs73374493 | 15 | 34629167 | NOP10 | ENSG00000182117.4 | 1.834E-9 | 0 | 6211 | gtex_brain_putamen_basal |
| rs6495661 | 15 | 34630397 | NOP10 | ENSG00000182117.4 | 1.668E-9 | 0 | 4981 | gtex_brain_putamen_basal |
| rs6495662 | 15 | 34630582 | NOP10 | ENSG00000182117.4 | 1.739E-9 | 0 | 4796 | gtex_brain_putamen_basal |
| rs10603445 | 15 | 34630691 | NOP10 | ENSG00000182117.4 | 2.184E-9 | 0 | 4687 | gtex_brain_putamen_basal |
| rs1845773 | 15 | 34630886 | NOP10 | ENSG00000182117.4 | 3.131E-9 | 0 | 4492 | gtex_brain_putamen_basal |
| rs56057955 | 15 | 34631927 | NOP10 | ENSG00000182117.4 | 3.829E-10 | 0 | 3451 | gtex_brain_putamen_basal |
| rs371596776 | 15 | 34632277 | NOP10 | ENSG00000182117.4 | 2.051E-8 | 0 | 3101 | gtex_brain_putamen_basal |
| rs72486679 | 15 | 34632357 | NOP10 | ENSG00000182117.4 | 2.857E-9 | 0 | 3021 | gtex_brain_putamen_basal |
| rs73374500 | 15 | 34632686 | NOP10 | ENSG00000182117.4 | 4.91E-10 | 0 | 2692 | gtex_brain_putamen_basal |
| rs7182584 | 15 | 34632816 | NOP10 | ENSG00000182117.4 | 3.267E-9 | 0 | 2562 | gtex_brain_putamen_basal |
| rs2219668 | 15 | 34632857 | NOP10 | ENSG00000182117.4 | 3.312E-9 | 0 | 2521 | gtex_brain_putamen_basal |
| rs4569235 | 15 | 34633328 | NOP10 | ENSG00000182117.4 | 3.819E-9 | 0 | 2050 | gtex_brain_putamen_basal |
| rs73374502 | 15 | 34633422 | NOP10 | ENSG00000182117.4 | 3.921E-9 | 0 | 1956 | gtex_brain_putamen_basal |
| rs74244096 | 15 | 34633476 | NOP10 | ENSG00000182117.4 | 6.016E-10 | 0 | 1902 | gtex_brain_putamen_basal |
| rs56762274 | 15 | 34633603 | NOP10 | ENSG00000182117.4 | 4.156E-9 | 0 | 1775 | gtex_brain_putamen_basal |
| rs59861881 | 15 | 34633667 | NOP10 | ENSG00000182117.4 | 6.85E-10 | 0 | 1711 | gtex_brain_putamen_basal |
| rs554185002 | 15 | 34633685 | NOP10 | ENSG00000182117.4 | 5.846E-9 | 0 | 1693 | gtex_brain_putamen_basal |
| rs201455174 | 15 | 34633699 | NOP10 | ENSG00000182117.4 | 8.506E-10 | 0 | 1679 | gtex_brain_putamen_basal |
| rs3063 | 15 | 34634033 | NOP10 | ENSG00000182117.4 | 4.744E-9 | 0 | 1345 | gtex_brain_putamen_basal |
| rs1045238 | 15 | 34634124 | NOP10 | ENSG00000182117.4 | 4.89E-9 | 0 | 1254 | gtex_brain_putamen_basal |
| rs1045204 | 15 | 34634138 | NOP10 | ENSG00000182117.4 | 3.516E-9 | 0 | 1240 | gtex_brain_putamen_basal |
| rs1045194 | 15 | 34634139 | NOP10 | ENSG00000182117.4 | 3.045E-8 | 0 | 1239 | gtex_brain_putamen_basal |
| rs34639726 | 15 | 34634501 | NOP10 | ENSG00000182117.4 | 8.815E-10 | 0 | 877 | gtex_brain_putamen_basal |
| rs12593384 | 15 | 34634626 | NOP10 | ENSG00000182117.4 | 5.62E-9 | 0 | 752 | gtex_brain_putamen_basal |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
No co-expressed genes in brain regions
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| LAIHO COLORECTAL CANCER SERRATED UP | 112 | 71 | All SZGR 2.0 genes in this pathway |
| GRAESSMANN APOPTOSIS BY DOXORUBICIN DN | 1781 | 1082 | All SZGR 2.0 genes in this pathway |
| GRAESSMANN RESPONSE TO MC AND DOXORUBICIN DN | 770 | 415 | All SZGR 2.0 genes in this pathway |
| STARK PREFRONTAL CORTEX 22Q11 DELETION DN | 517 | 309 | All SZGR 2.0 genes in this pathway |
| BYSTRYKH HEMATOPOIESIS STEM CELL QTL CIS | 128 | 77 | All SZGR 2.0 genes in this pathway |
| BYSTRYKH HEMATOPOIESIS STEM CELL AND BRAIN QTL CIS | 65 | 38 | All SZGR 2.0 genes in this pathway |
| DURCHDEWALD SKIN CARCINOGENESIS UP | 88 | 47 | All SZGR 2.0 genes in this pathway |
| ACEVEDO LIVER TUMOR VS NORMAL ADJACENT TISSUE UP | 863 | 514 | All SZGR 2.0 genes in this pathway |
| ACEVEDO LIVER CANCER WITH H3K27ME3 UP | 295 | 149 | All SZGR 2.0 genes in this pathway |
| MOOTHA PGC | 420 | 269 | All SZGR 2.0 genes in this pathway |
| FOURNIER ACINAR DEVELOPMENT LATE 2 | 277 | 172 | All SZGR 2.0 genes in this pathway |
| WONG EMBRYONIC STEM CELL CORE | 335 | 193 | All SZGR 2.0 genes in this pathway |
| MIKKELSEN ES ICP WITH H3K4ME3 | 718 | 401 | All SZGR 2.0 genes in this pathway |
| MIKKELSEN NPC ICP WITH H3K4ME3 | 445 | 257 | All SZGR 2.0 genes in this pathway |
| PILON KLF1 TARGETS DN | 1972 | 1213 | All SZGR 2.0 genes in this pathway |
| KIM TIAL1 TARGETS | 32 | 22 | All SZGR 2.0 genes in this pathway |