Summary ?
GeneID57670
SymbolKIAA1549
Synonyms-
DescriptionKIAA1549
ReferenceMIM:613344|HGNC:HGNC:22219|Ensembl:ENSG00000122778|Vega:OTTHUMG00000157214
Gene typeprotein-coding
Map location7q34
Pascal p-value0.003
Sherlock p-value0.695
Fetal beta1.489
eGeneMyers' cis & trans
Meta

Gene in Data Sources
Gene set name Method of gene setDescriptionInfo
CV:GWASdbGenome-wide Association StudiesGWASdb records for schizophrenia
CV:PGCnpGenome-wide Association StudyGWAS
NetworkShortest path distance of core genes in the Human protein-protein interaction networkContribution to shortest path in PPI network: 0.015 

Section I. Genetics and epigenetics annotation

@eQTL annotation

SNP IDChromosomePositioneGeneGene Entrez IDpvalueqvalueTSS distanceeQTL type
rs11209636chr171024708KIAA1549576700.1trans
rs2712089chr224080273KIAA1549576700.01trans
rs13418573chr2205418512KIAA1549576700trans
rs17029291chr332402138KIAA1549576704.192E-4trans
rs93127240KIAA1549576700.13trans
rs750544chr551749054KIAA1549576700.02trans
rs1041529chr915549730KIAA1549576700.12trans
rs1057507chr937436924KIAA1549576700.13trans
rs12569493chr1074886042KIAA1549576700.15trans
rs16930362chr1074890320KIAA1549576700.1trans
rs7092445chr1074921991KIAA1549576700.04trans
rs11000607chr1075089777KIAA1549576700.18trans
rs16930573chr1075167645KIAA1549576700.1trans
rs7947255chr1120334894KIAA1549576700.03trans
rs7949511chr1167938847KIAA1549576700.1trans
rs7935070chr1167982990KIAA1549576700.16trans
rs1324669chr13107872446KIAA1549576702.04E-8trans
rs10135720chr14104247900KIAA1549576700.12trans
rs16941306chr1745010551KIAA1549576700.05trans
rs16941373chr1745042780KIAA1549576700.06trans
rs16941390chr1745050984KIAA1549576700.08trans
rs2469009chr1870713334KIAA1549576700.13trans
rs17145698chrX40218345KIAA1549576700.01trans
rs17328938chrX99519447KIAA1549576700.16trans
rs1335267chrX99570223KIAA1549576700.16trans

Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression during devlopment (BrainCloud)

Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

No co-expressed genes in brain regions


Section III. Gene Ontology annotation

Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0016020membraneIEA-
GO:0016021integral to membraneIEA-

Section V. Pathway annotation

Pathway namePathway size# SZGR 2.0 genes in pathwayInfo
PEREZ TP53 TARGETS 1174695All SZGR 2.0 genes in this pathway
IVANOVA HEMATOPOIESIS STEM CELL AND PROGENITOR 681420All SZGR 2.0 genes in this pathway
CREIGHTON ENDOCRINE THERAPY RESISTANCE 2 473224All SZGR 2.0 genes in this pathway
GOBERT OLIGODENDROCYTE DIFFERENTIATION DN 1080713All SZGR 2.0 genes in this pathway