Gene Page: LY6G5B

Summary ?
GeneID58496
SymbolLY6G5B
SynonymsC6orf19|G5b
Descriptionlymphocyte antigen 6 complex, locus G5B
ReferenceMIM:610433|HGNC:HGNC:13931|HPRD:10063|
Gene typeprotein-coding
Map location6p21.3
Pascal p-value1E-12

Gene in Data Sources
Gene set name Method of gene setDescriptionInfo
CV:PGCnpGenome-wide Association StudyGWAS
GSMA_IGenome scan meta-analysisPsr: 0.033 

Section I. Genetics and epigenetics annotation


Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

Top co-expressed genes in brain regions

Top 10 positively co-expressed genes
GenePearson's Correlation Spearman's Correlation
DUS1L0.840.83
PIGQ0.830.83
CEMP10.830.83
AMDHD20.820.83
SHC20.820.85
NPDC10.820.84
C19orf60.810.83
GAA0.810.82
ZFP410.800.83
ACAP30.800.81
Top 10 negatively co-expressed genes
GenePearson's Correlation Spearman's Correlation
SEC62-0.52-0.55
AF347015.21-0.51-0.43
GNG11-0.46-0.46
MT-ATP8-0.42-0.39
CLEC2B-0.42-0.40
AF347015.31-0.41-0.33
MT-CO2-0.41-0.33
AF347015.8-0.41-0.32
NOSTRIN-0.41-0.35
AF347015.18-0.41-0.34

Section III. Gene Ontology annotation

Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0005576extracellular regionIEA-

Section V. Pathway annotation

Pathway namePathway size# SZGR 2.0 genes in pathwayInfo
MARSON BOUND BY E2F4 UNSTIMULATED 728415All SZGR 2.0 genes in this pathway
LI INDUCED T TO NATURAL KILLER UP 307182All SZGR 2.0 genes in this pathway
ZWANG TRANSIENTLY UP BY 1ST EGF PULSE ONLY 1839928All SZGR 2.0 genes in this pathway