Summary ?
GeneID643224
SymbolTUBBP5
Synonyms-
Descriptiontubulin beta pseudogene 5
ReferenceHGNC:HGNC:23674|
Gene typepseudo
Map location9q34.3
Pascal p-value0.034
eGeneAnterior cingulate cortex BA24
Cerebellar Hemisphere
Cerebellum
Cortex
Frontal Cortex BA9
Hypothalamus
Meta

Gene in Data Sources
Gene set name Method of gene setDescriptionInfo
CV:PGCnpGenome-wide Association StudyGWAS

Section I. Genetics and epigenetics annotation

@eQTL annotation

SNP IDChromosomePositioneGeneGene Entrez IDpvalueqvalueTSS distanceeQTL type
rs97769619141020002TUBBP5ENSG00000159247.81.335E-70.01-24563gtex_brain_ba24
rs789774279141022305TUBBP5ENSG00000159247.81.535E-60.01-22260gtex_brain_ba24
rs111373789141026797TUBBP5ENSG00000159247.87.99E-70.01-17768gtex_brain_ba24
rs94101669141027783TUBBP5ENSG00000159247.84.742E-70.01-16782gtex_brain_ba24
rs111373809141030078TUBBP5ENSG00000159247.81.76E-60.01-14487gtex_brain_ba24
rs111373829141030938TUBBP5ENSG00000159247.83.219E-60.01-13627gtex_brain_ba24
rs111373839141031037TUBBP5ENSG00000159247.83.294E-60.01-13528gtex_brain_ba24
rs108671099141031222TUBBP5ENSG00000159247.83.308E-60.01-13343gtex_brain_ba24
rs108671119141033454TUBBP5ENSG00000159247.85.823E-70.01-11111gtex_brain_ba24
rs111373869141044672TUBBP5ENSG00000159247.81.726E-60.01107gtex_brain_ba24
rs111373899141045077TUBBP5ENSG00000159247.81.872E-60.01512gtex_brain_ba24
rs111373969141052166TUBBP5ENSG00000159247.84.011E-70.017601gtex_brain_ba24
rs42957349141064741TUBBP5ENSG00000159247.81.354E-60.0120176gtex_brain_ba24

Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

No co-expressed genes in brain regions


Section V. Pathway annotation

Pathway namePathway size# SZGR 2.0 genes in pathwayInfo
DODD NASOPHARYNGEAL CARCINOMA UP 1821933All SZGR 2.0 genes in this pathway
HEIDENBLAD AMPLICON 8Q24 UP 4023All SZGR 2.0 genes in this pathway
LOPEZ MBD TARGETS 957597All SZGR 2.0 genes in this pathway
SARRIO EPITHELIAL MESENCHYMAL TRANSITION UP 180114All SZGR 2.0 genes in this pathway
KORKOLA EMBRYONIC CARCINOMA VS SEMINOMA DN 2514All SZGR 2.0 genes in this pathway