Summary ?
GeneID64599
SymbolGIGYF1
SynonymsGYF1|PERQ1
DescriptionGRB10 interacting GYF protein 1
ReferenceMIM:612064|HGNC:HGNC:9126|Ensembl:ENSG00000146830|HPRD:10145|Vega:OTTHUMG00000157036
Gene typeprotein-coding
Map location7q22
Pascal p-value1.965E-4
Sherlock p-value0.869
eGenePutamen basal ganglia
Myers' cis & trans

Gene in Data Sources
Gene set name Method of gene setDescriptionInfo
CV:PGCnpGenome-wide Association StudyGWAS

Section I. Genetics and epigenetics annotation

@eQTL annotation

SNP IDChromosomePositioneGeneGene Entrez IDpvalueqvalueTSS distanceeQTL type
rs6576747chr185530213GIGYF1645990.18trans
rs16829545chr2151977407GIGYF1645994.086E-5trans
rs7630486chr3189801990GIGYF1645990.17trans
rs16955618chr1529937543GIGYF1645992.878E-4trans
rs1761450chr1954818034GIGYF1645990.12trans
rs16996420chr209780867GIGYF1645990.13trans
rs2217897100271521GIGYF1ENSG00000146830.99.962E-7015550gtex_brain_putamen_basal
rs2217927100278657GIGYF1ENSG00000146830.92.406E-708414gtex_brain_putamen_basal
rs2217947100281768GIGYF1ENSG00000146830.92.238E-705303gtex_brain_putamen_basal
rs2217987100287495GIGYF1ENSG00000146830.94.012E-70-424gtex_brain_putamen_basal
rs2217847100292830GIGYF1ENSG00000146830.92.184E-70-5759gtex_brain_putamen_basal
rs2217817100295908GIGYF1ENSG00000146830.91.123E-60-8837gtex_brain_putamen_basal
rs2217807100297035GIGYF1ENSG00000146830.92.184E-70-9964gtex_brain_putamen_basal
rs2217787100298024GIGYF1ENSG00000146830.92.302E-70-10953gtex_brain_putamen_basal
rs2217747100298984GIGYF1ENSG00000146830.94.012E-70-11913gtex_brain_putamen_basal
rs24329297100299028GIGYF1ENSG00000146830.91.076E-70-11957gtex_brain_putamen_basal
rs2217707100302094GIGYF1ENSG00000146830.91.076E-70-15023gtex_brain_putamen_basal
rs5340437100312724GIGYF1ENSG00000146830.92.533E-60-25653gtex_brain_putamen_basal
rs4924307100313099GIGYF1ENSG00000146830.92.691E-60-26028gtex_brain_putamen_basal
rs5065977100313420GIGYF1ENSG00000146830.94.012E-70-26349gtex_brain_putamen_basal
rs17349077100315517GIGYF1ENSG00000146830.92.691E-60-28446gtex_brain_putamen_basal
rs5644497100321138GIGYF1ENSG00000146830.91.8E-60-34067gtex_brain_putamen_basal

Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

No co-expressed genes in brain regions


Section V. Pathway annotation

Pathway namePathway size# SZGR 2.0 genes in pathwayInfo
GINESTIER BREAST CANCER ZNF217 AMPLIFIED DN 335193All SZGR 2.0 genes in this pathway
GRADE COLON CANCER UP 871505All SZGR 2.0 genes in this pathway
MIKKELSEN IPS HCP WITH H3 UNMETHYLATED 8050All SZGR 2.0 genes in this pathway
MIKKELSEN ES HCP WITH H3 UNMETHYLATED 6331All SZGR 2.0 genes in this pathway
MIKKELSEN MEF HCP WITH H3 UNMETHYLATED 228119All SZGR 2.0 genes in this pathway
ZWANG TRANSIENTLY UP BY 1ST EGF PULSE ONLY 1839928All SZGR 2.0 genes in this pathway
ZWANG EGF INTERVAL DN 214124All SZGR 2.0 genes in this pathway