Gene Page: VPS16

Summary ?
GeneID64601
SymbolVPS16
SynonymshVPS16
DescriptionVPS16, CORVET/HOPS core subunit
ReferenceMIM:608550|HGNC:HGNC:14584|Ensembl:ENSG00000215305|HPRD:12259|Vega:OTTHUMG00000031714
Gene typeprotein-coding
Map location20p13
Pascal p-value0.03
Sherlock p-value0.814
eGenePutamen basal ganglia
SupportG2Cdb.human_BAYES-COLLINS-HUMAN-PSD-FULL
G2Cdb.human_BAYES-COLLINS-MOUSE-PSD-CONSENSUS

Gene in Data Sources
Gene set name Method of gene setDescriptionInfo
CV:PGCnpGenome-wide Association StudyGWAS

Section I. Genetics and epigenetics annotation

@eQTL annotation

SNP IDChromosomePositioneGeneGene Entrez IDpvalueqvalueTSS distanceeQTL type
rs6051449202842685VPS16ENSG00000215305.58.331E-70.0121336gtex_brain_putamen_basal
rs6051456202856288VPS16ENSG00000215305.51.736E-60.0134939gtex_brain_putamen_basal
rs148078202861603VPS16ENSG00000215305.52.382E-60.0140254gtex_brain_putamen_basal
rs6138926202865742VPS16ENSG00000215305.51.736E-60.0144393gtex_brain_putamen_basal
rs1748066202865776VPS16ENSG00000215305.52.392E-60.0144427gtex_brain_putamen_basal
rs7262267202865976VPS16ENSG00000215305.51.736E-60.0144627gtex_brain_putamen_basal
rs2181870202874969VPS16ENSG00000215305.51.926E-60.0153620gtex_brain_putamen_basal
rs35458296202877173VPS16ENSG00000215305.51.751E-60.0155824gtex_brain_putamen_basal
rs672406202885205VPS16ENSG00000215305.51.976E-70.0163856gtex_brain_putamen_basal
rs605519202893956VPS16ENSG00000215305.52.898E-60.0172607gtex_brain_putamen_basal
rs57348182202894312VPS16ENSG00000215305.51.216E-60.0172963gtex_brain_putamen_basal
rs619450202894790VPS16ENSG00000215305.53.75E-70.0173441gtex_brain_putamen_basal
rs681167202899979VPS16ENSG00000215305.52.036E-60.0178630gtex_brain_putamen_basal

Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

No co-expressed genes in brain regions


Section V. Pathway annotation

Pathway namePathway size# SZGR 2.0 genes in pathwayInfo
HOLLMANN APOPTOSIS VIA CD40 DN 267178All SZGR 2.0 genes in this pathway
VERHAAK GLIOBLASTOMA CLASSICAL 162122All SZGR 2.0 genes in this pathway