Summary ?
GeneID64847
SymbolSPATA20
SynonymsHEL-S-98|SSP411|Tisp78
Descriptionspermatogenesis associated 20
ReferenceMIM:613939|HGNC:HGNC:26125|Ensembl:ENSG00000006282|HPRD:07961|Vega:OTTHUMG00000162162
Gene typeprotein-coding
Map location17q21.33
Pascal p-value0.005
Sherlock p-value0.677
eGeneAnterior cingulate cortex BA24
Caudate basal ganglia
Cortex
Frontal Cortex BA9
Hippocampus
Hypothalamus
Nucleus accumbens basal ganglia
Putamen basal ganglia
Myers' cis & trans
Meta

Gene in Data Sources
Gene set name Method of gene setDescriptionInfo
CV:PGCnpGenome-wide Association StudyGWAS

Section I. Genetics and epigenetics annotation

@eQTL annotation

SNP IDChromosomePositioneGeneGene Entrez IDpvalueqvalueTSS distanceeQTL type
rs2311336chr115144982SPATA20648470.16trans
rs80687261748593134SPATA20ENSG00000006282.155.143E-70-30533gtex_brain_ba24
rs284980911748597114SPATA20ENSG00000006282.155.296E-120-26553gtex_brain_ba24
rs99131971748598291SPATA20ENSG00000006282.155.296E-120-25376gtex_brain_ba24
rs11067301748602412SPATA20ENSG00000006282.155.037E-110-21255gtex_brain_ba24
rs24123271748602840SPATA20ENSG00000006282.155.037E-110-20827gtex_brain_ba24
rs169491201748610732SPATA20ENSG00000006282.155.004E-110-12935gtex_brain_ba24
rs764877141748611993SPATA20ENSG00000006282.157.113E-110-11674gtex_brain_ba24
rs1116709421748612315SPATA20ENSG00000006282.151.426E-100-11352gtex_brain_ba24
rs797236781748612433SPATA20ENSG00000006282.151.643E-100-11234gtex_brain_ba24
rs23060011748615329SPATA20ENSG00000006282.151.152E-100-8338gtex_brain_ba24
rs1116786381748619272SPATA20ENSG00000006282.151.759E-120-4395gtex_brain_ba24
rs1126572441748619290SPATA20ENSG00000006282.151.759E-120-4377gtex_brain_ba24
rs802778781748624045SPATA20ENSG00000006282.151.755E-120378gtex_brain_ba24
rs98902001748624523SPATA20ENSG00000006282.151.368E-110856gtex_brain_ba24
rs760226811748625223SPATA20ENSG00000006282.151.755E-1201556gtex_brain_ba24
rs2006377411748625307SPATA20ENSG00000006282.151.734E-1201640gtex_brain_ba24
rs80764701748625828SPATA20ENSG00000006282.155.026E-1202161gtex_brain_ba24
rs80766321748625928SPATA20ENSG00000006282.152.892E-1302261gtex_brain_ba24
rs8786191748633271SPATA20ENSG00000006282.157.091E-1209604gtex_brain_ba24
rs65046751748634357SPATA20ENSG00000006282.157.07E-12010690gtex_brain_ba24
rs1985351748635052SPATA20ENSG00000006282.151.257E-9011385gtex_brain_ba24
rs9891281748636534SPATA20ENSG00000006282.153.49E-13012867gtex_brain_ba24
rs99060841748637385SPATA20ENSG00000006282.152.211E-13013718gtex_brain_ba24
rs18705811748637667SPATA20ENSG00000006282.151.485E-7014000gtex_brain_ba24
rs1114188281748640419SPATA20ENSG00000006282.153.535E-8016752gtex_brain_ba24
rs785491881748640936SPATA20ENSG00000006282.151.568E-7017269gtex_brain_ba24
rs783572871748643104SPATA20ENSG00000006282.155.487E-7019437gtex_brain_ba24
rs99040931748663004SPATA20ENSG00000006282.156.553E-7039337gtex_brain_ba24
rs561347831748595198SPATA20ENSG00000006282.155.05E-70-28469gtex_brain_putamen_basal
rs284980911748597114SPATA20ENSG00000006282.152.475E-80-26553gtex_brain_putamen_basal
rs99131971748598291SPATA20ENSG00000006282.151.611E-70-25376gtex_brain_putamen_basal
rs11067301748602412SPATA20ENSG00000006282.152.744E-70-21255gtex_brain_putamen_basal
rs24123271748602840SPATA20ENSG00000006282.152.744E-70-20827gtex_brain_putamen_basal
rs169491201748610732SPATA20ENSG00000006282.152.732E-70-12935gtex_brain_putamen_basal
rs764877141748611993SPATA20ENSG00000006282.158.541E-110-11674gtex_brain_putamen_basal
rs1116709421748612315SPATA20ENSG00000006282.154.725E-90-11352gtex_brain_putamen_basal
rs797236781748612433SPATA20ENSG00000006282.159.072E-120-11234gtex_brain_putamen_basal
rs23060011748615329SPATA20ENSG00000006282.153.111E-130-8338gtex_brain_putamen_basal
rs47941581748616114SPATA20ENSG00000006282.152.216E-70-7553gtex_brain_putamen_basal
rs23060021748617829SPATA20ENSG00000006282.151.276E-70-5838gtex_brain_putamen_basal
rs3978186721748617903SPATA20ENSG00000006282.151.275E-70-5764gtex_brain_putamen_basal
rs1116786381748619272SPATA20ENSG00000006282.154.73E-140-4395gtex_brain_putamen_basal
rs1126572441748619290SPATA20ENSG00000006282.154.72E-140-4377gtex_brain_putamen_basal
rs11226341748621365SPATA20ENSG00000006282.151.231E-70-2302gtex_brain_putamen_basal
rs3978566701748621453SPATA20ENSG00000006282.155.489E-80-2214gtex_brain_putamen_basal
rs802778781748624045SPATA20ENSG00000006282.155.848E-140378gtex_brain_putamen_basal
rs98902001748624523SPATA20ENSG00000006282.154.522E-160856gtex_brain_putamen_basal
rs760226811748625223SPATA20ENSG00000006282.158.858E-1401556gtex_brain_putamen_basal
rs2006377411748625307SPATA20ENSG00000006282.159.235E-1401640gtex_brain_putamen_basal
rs80764701748625828SPATA20ENSG00000006282.156.655E-1302161gtex_brain_putamen_basal
rs80766321748625928SPATA20ENSG00000006282.159.708E-1602261gtex_brain_putamen_basal
rs8786191748633271SPATA20ENSG00000006282.159.648E-1309604gtex_brain_putamen_basal
rs65046751748634357SPATA20ENSG00000006282.151.913E-12010690gtex_brain_putamen_basal
rs1985351748635052SPATA20ENSG00000006282.153.541E-10011385gtex_brain_putamen_basal
rs9891281748636534SPATA20ENSG00000006282.152.064E-15012867gtex_brain_putamen_basal
rs99060841748637385SPATA20ENSG00000006282.151.55E-15013718gtex_brain_putamen_basal
rs18705811748637667SPATA20ENSG00000006282.154.457E-9014000gtex_brain_putamen_basal
rs1114188281748640419SPATA20ENSG00000006282.159.274E-10016752gtex_brain_putamen_basal
rs785491881748640936SPATA20ENSG00000006282.155.273E-9017269gtex_brain_putamen_basal
rs783572871748643104SPATA20ENSG00000006282.157.778E-7019437gtex_brain_putamen_basal
rs760535441748659540SPATA20ENSG00000006282.158.139E-7035873gtex_brain_putamen_basal

Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

No co-expressed genes in brain regions


Section V. Pathway annotation

Pathway namePathway size# SZGR 2.0 genes in pathwayInfo
ONKEN UVEAL MELANOMA UP 783507All SZGR 2.0 genes in this pathway
BASAKI YBX1 TARGETS DN 384230All SZGR 2.0 genes in this pathway
FARMER BREAST CANCER BASAL VS LULMINAL 330215All SZGR 2.0 genes in this pathway
NIKOLSKY BREAST CANCER 17Q21 Q25 AMPLICON 335181All SZGR 2.0 genes in this pathway
JIANG HYPOXIA NORMAL 311205All SZGR 2.0 genes in this pathway
WEST ADRENOCORTICAL TUMOR DN 546362All SZGR 2.0 genes in this pathway
AGUIRRE PANCREATIC CANCER COPY NUMBER UP 298174All SZGR 2.0 genes in this pathway
MARTENS TRETINOIN RESPONSE UP 857456All SZGR 2.0 genes in this pathway
JOHNSTONE PARVB TARGETS 3 UP 430288All SZGR 2.0 genes in this pathway