Gene Page: UPF3A

Summary
GeneID  65110
Symbol  UPF3A
Synonyms  HUPF3A|RENT3A|UPF3
Description  UPF3 regulator of nonsense transcripts homolog A (yeast)
See related  HGNC:20332|MIM:605530|Ensembl:ENSG00000169062|HPRD:09274|
Locus tag  -
Gene type  protein-coding
Map location  13q34
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
LiteratureHigh-throughput literature-searchCo-occurance with Schizophrenia keywords: [schizophrenias, schizophrenia]Click to show detail
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
Top 10 negatively co-expressed genes
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0000166nucleotide bindingIEA-
GO:0003723RNA bindingIEA-
GO:0005487nucleocytoplasmic transporter activityNAS11163187 
GO:0005515protein bindingIPI15231747 
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0000184nuclear-transcribed mRNA catabolic process, nonsense-mediated decayNAS11163187 
GO:0006810transportIEA-
GO:0051028mRNA transportIEA-
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0005634nucleusNAS11163187 
GO:0005737cytoplasmNAS11163187 
 
Protein-protein InteractionsShown by network
InteractorsAliases BOfficial full name BExperimentalSourcePubMed ID
DCP2FLJ33245 | NUDT20DCP2 decapping enzyme homolog (S. cerevisiae)Affinity Capture-WesternBioGRID14527413 
EXOSC10PM-Scl | PM/Scl-100 | PMSCL | PMSCL2 | RRP6 | Rrp6p | p2 | p3 | p4exosome component 10Affinity Capture-WesternBioGRID14527413 
EXOSC2RRP4 | Rrp4p | hRrp4p | p7exosome component 2Affinity Capture-WesternBioGRID14527413 
EXOSC4FLJ20591 | RRP41 | RRP41A | Rrp41p | SKI6 | Ski6p | hRrp41p | p12Aexosome component 4Affinity Capture-WesternBioGRID14527413 
GSK3B-glycogen synthase kinase 3 beta-HPRD,BioGRID15231747 
HBBCD113t-Chemoglobin, betaProtein-RNABioGRID11163187 
HNRNPA1HNRPA1 | MGC102835heterogeneous nuclear ribonucleoprotein A1-HPRD11546873 
IFITM21-8Dinterferon induced transmembrane protein 2 (1-8D)-HPRD,BioGRID15231747 
NXF1DKFZp667O0311 | MEX67 | TAPnuclear RNA export factor 1-HPRD11546873 
PARNDANpoly(A)-specific ribonuclease (deadenylation nuclease)Affinity Capture-WesternBioGRID14527413 
RBM8ABOV-1A | BOV-1B | BOV-1C | MDS014 | RBM8 | RBM8B | Y14 | ZNRP | ZRNP1RNA binding motif protein 8A-HPRD,BioGRID11546873 
SMG161E3.4 | ATX | KIAA0421 | LIPPI-3-kinase-related kinase SMG-1Affinity Capture-WesternBioGRID11544179 
THOC4ALY | BEFTHO complex 4-HPRD11546873 
UPF1FLJ43809 | FLJ46894 | HUPF1 | KIAA0221 | NORF1 | RENT1 | pNORF1UPF1 regulator of nonsense transcripts homolog (yeast)-HPRD,BioGRID11163187 
UPF2DKFZp434D222 | HUPF2 | KIAA1408 | MGC138834 | MGC138835 | RENT2 | smg-3UPF2 regulator of nonsense transcripts homolog (yeast)-HPRD,BioGRID11163187 
UPF3BHUPF3B | MRXS14 | RENT3B | UPF3XUPF3 regulator of nonsense transcripts homolog B (yeast)Affinity Capture-WesternBioGRID14527413 
XRN1DKFZp434P0721 | DKFZp686B22225 | DKFZp686F19113 | FLJ41903 | SEP15'-3' exoribonuclease 1Affinity Capture-WesternBioGRID14527413 
 
Pathway annotation
Pathway namePathway size# SZGR genes in pathwayInfo
REACTOME_METABOLISM_OF_MRNA 284128All SZGR genes in this pathway
REACTOME_METABOLISM_OF_RNA 330155All SZGR genes in this pathway
REACTOME_NONSENSE_MEDIATED_DECAY_ENHANCED_BY_THE_EXON_JUNCTION_COMPLEX 17657All SZGR genes in this pathway
CASORELLI_ACUTE_PROMYELOCYTIC_LEUKEMIA_DN 663425All SZGR genes in this pathway
DIAZ_CHRONIC_MEYLOGENOUS_LEUKEMIA_UP 1382904All SZGR genes in this pathway
LAIHO_COLORECTAL_CANCER_SERRATED_DN 8647All SZGR genes in this pathway
KIM_WT1_TARGETS_DN 459276All SZGR genes in this pathway
ENK_UV_RESPONSE_KERATINOCYTE_DN 485334All SZGR genes in this pathway
HAMAI_APOPTOSIS_VIA_TRAIL_UP 584356All SZGR genes in this pathway
BENPORATH_EED_TARGETS 1062725All SZGR genes in this pathway
SHEN_SMARCA2_TARGETS_UP 424268All SZGR genes in this pathway
GALE_APL_WITH_FLT3_MUTATED_UP 5635All SZGR genes in this pathway
MOREAUX_MULTIPLE_MYELOMA_BY_TACI_DN 172107All SZGR genes in this pathway
BLALOCK_ALZHEIMERS_DISEASE_UP 16911088All SZGR genes in this pathway
ACEVEDO_LIVER_CANCER_UP 973570All SZGR genes in this pathway
AGUIRRE_PANCREATIC_CANCER_COPY_NUMBER_UP 298174All SZGR genes in this pathway
MILI_PSEUDOPODIA_CHEMOTAXIS_UP 7445All SZGR genes in this pathway
SAKAI_CHRONIC_HEPATITIS_VS_LIVER_CANCER_UP 8363All SZGR genes in this pathway
JOHNSTONE_PARVB_TARGETS_3_DN 918550All SZGR genes in this pathway
BRUINS_UVC_RESPONSE_VIA_TP53_GROUP_B 549316All SZGR genes in this pathway
RAO_BOUND_BY_SALL4_ISOFORM_B 517302All SZGR genes in this pathway


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