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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Gene Page: SOX11

Summary

GeneID

6664

Symbol

SOX11

Synonyms

Description

SRY (sex determining region Y)-box 11

Locus tag

Gene type

protein-coding

Map location

2p25

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GO_Annotation

Mapping neuro-related keywords to Gene Ontology annotations

Hits with neuro-related keywords: 1

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0003677

DNA binding

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0007399

nervous system development

TAS

neurite (GO term level: 5)

8666406

GO:0006355

regulation of transcription, DNA-dependent

IEA

GO:0006350

transcription

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005634

nucleus

IEA

GO:0005730

nucleolus

IDA

18029348

GO:0005737

cytoplasm

IDA

18029348

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
POU3F2	BRN2 \| OCT7 \| OTF7 \| POUF3	POU class 3 homeobox 2	-	HPRD	9632656
POU3F3	BRN1 \| OTF8	POU class 3 homeobox 3	-	HPRD	9632656

Pathway annotation

Pathway name	Pathway size	# SZGR genes in pathway	Info
DAVICIONI_TARGETS_OF_PAX_FOXO1_FUSIONS_DN	68	49	All SZGR genes in this pathway
DAVICIONI_RHABDOMYOSARCOMA_PAX_FOXO1_FUSION_DN	15	11	All SZGR genes in this pathway
SAMOLS_TARGETS_OF_KHSV_MIRNAS_UP	8	7	All SZGR genes in this pathway
DOANE_BREAST_CANCER_ESR1_DN	48	28	All SZGR genes in this pathway
MULLIGHAN_MLL_SIGNATURE_1_DN	242	165	All SZGR genes in this pathway
HUMMEL_BURKITTS_LYMPHOMA_UP	43	27	All SZGR genes in this pathway
NADERI_BREAST_CANCER_PROGNOSIS_UP	50	26	All SZGR genes in this pathway
YANG_BREAST_CANCER_ESR1_DN	25	15	All SZGR genes in this pathway
SCHAEFFER_PROSTATE_DEVELOPMENT_6HR_DN	514	330	All SZGR genes in this pathway
BENPORATH_ES_CORE_NINE_CORRELATED	100	68	All SZGR genes in this pathway
SHEPARD_BMYB_MORPHOLINO_DN	200	112	All SZGR genes in this pathway
SHEPARD_BMYB_TARGETS	74	41	All SZGR genes in this pathway
SHEPARD_CRUSH_AND_BURN_MUTANT_DN	185	111	All SZGR genes in this pathway
GUO_HEX_TARGETS_UP	81	54	All SZGR genes in this pathway
REN_ALVEOLAR_RHABDOMYOSARCOMA_UP	98	64	All SZGR genes in this pathway
MCCLUNG_CREB1_TARGETS_DN	57	39	All SZGR genes in this pathway
CUI_TCF21_TARGETS_UP	37	27	All SZGR genes in this pathway
MCCLUNG_COCAIN_REWARD_4WK	75	47	All SZGR genes in this pathway
CUI_TCF21_TARGETS_2_UP	428	266	All SZGR genes in this pathway
HELLER_HDAC_TARGETS_DN	292	189	All SZGR genes in this pathway
MARTINEZ_RB1_TARGETS_DN	543	317	All SZGR genes in this pathway
MARTINEZ_TP53_TARGETS_UP	602	364	All SZGR genes in this pathway
MARTINEZ_RB1_AND_TP53_TARGETS_DN	591	366	All SZGR genes in this pathway
SMID_BREAST_CANCER_RELAPSE_IN_BONE_DN	315	197	All SZGR genes in this pathway
SMID_BREAST_CANCER_LUMINAL_B_DN	564	326	All SZGR genes in this pathway
SMID_BREAST_CANCER_BASAL_UP	648	398	All SZGR genes in this pathway
BONOME_OVARIAN_CANCER_SURVIVAL_OPTIMAL_DEBULKING	246	152	All SZGR genes in this pathway
LABBE_TGFB1_TARGETS_UP	102	64	All SZGR genes in this pathway
LABBE_TARGETS_OF_TGFB1_AND_WNT3A_UP	111	70	All SZGR genes in this pathway
QI_PLASMACYTOMA_UP	259	185	All SZGR genes in this pathway
BLUM_RESPONSE_TO_SALIRASIB_DN	342	220	All SZGR genes in this pathway
SWEET_LUNG_CANCER_KRAS_DN	435	289	All SZGR genes in this pathway
POOLA_INVASIVE_BREAST_CANCER_UP	288	168	All SZGR genes in this pathway
NAKAYAMA_SOFT_TISSUE_TUMORS_PCA1_DN	74	47	All SZGR genes in this pathway
VERHAAK_GLIOBLASTOMA_PRONEURAL	177	132	All SZGR genes in this pathway
CHICAS_RB1_TARGETS_SENESCENT	572	352	All SZGR genes in this pathway
CARD_MIR302A_TARGETS	77	62	All SZGR genes in this pathway
BRUINS_UVC_RESPONSE_VIA_TP53_GROUP_A	898	516	All SZGR genes in this pathway
PASINI_SUZ12_TARGETS_DN	315	215	All SZGR genes in this pathway
RAFFEL_VEGFA_TARGETS_UP	9	8	All SZGR genes in this pathway
HOLLEMAN_VINCRISTINE_RESISTANCE_B_ALL_UP	38	22	All SZGR genes in this pathway
LIM_MAMMARY_STEM_CELL_UP	489	314	All SZGR genes in this pathway

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-101	1284	1291	1A,m8	hsa-miR-101	UACAGUACUGUGAUAACUGAAG
miR-125/351	5225	5231	1A	hsa-miR-125b^brain	UCCCUGAGACCCUAACUUGUGA
				hsa-miR-125a^brain	UCCCUGAGACCCUUUAACCUGUG
				hsa-miR-125b^brain	UCCCUGAGACCCUAACUUGUGA
				hsa-miR-125a^brain	UCCCUGAGACCCUUUAACCUGUG
miR-128	750	756	1A	hsa-miR-128a	UCACAGUGAACCGGUCUCUUUU
miR-128	750	756	1A	hsa-miR-128b	UCACAGUGAACCGGUCUCUUUC
miR-132/212	6635	6641	m8	hsa-miR-212^SZ	UAACAGUCUCCAGUCACGGCC
miR-132/212	6635	6641	m8	hsa-miR-132^brain	UAACAGUCUACAGCCAUGGUCG
miR-133	592	598	m8	hsa-miR-133a	UUGGUCCCCUUCAACCAGCUGU
miR-133	592	598	m8	hsa-miR-133b	UUGGUCCCCUUCAACCAGCUA
miR-137	6253	6260	1A,m8	hsa-miR-137	UAUUGCUUAAGAAUACGCGUAG
miR-137	6253	6260	1A,m8	hsa-miR-137	UAUUGCUUAAGAAUACGCGUAG
miR-141/200a	7223	7230	1A,m8	hsa-miR-141	UAACACUGUCUGGUAAAGAUGG
miR-141/200a	7223	7230	1A,m8	hsa-miR-200a	UAACACUGUCUGGUAACGAUGU
miR-142-3p	5726	5732	m8	hsa-miR-142-3p	UGUAGUGUUUCCUACUUUAUGGA
miR-142-5p	5074	5080	1A	hsa-miR-142-5p	CAUAAAGUAGAAAGCACUAC
miR-144	1285	1291	1A	hsa-miR-144	UACAGUAUAGAUGAUGUACUAG
miR-145	6392	6399	1A,m8	hsa-miR-145	GUCCAGUUUUCCCAGGAAUCCCUU
miR-145	6392	6399	1A,m8	hsa-miR-145	GUCCAGUUUUCCCAGGAAUCCCUU
miR-148/152	1496	1502	m8	hsa-miR-148a	UCAGUGCACUACAGAACUUUGU
				hsa-miR-152^brain	UCAGUGCAUGACAGAACUUGGG
				hsa-miR-148b	UCAGUGCAUCACAGAACUUUGU
miR-153	674	680	m8	hsa-miR-153	UUGCAUAGUCACAAAAGUGA
miR-155	7104	7110	m8	hsa-miR-155	UUAAUGCUAAUCGUGAUAGGGG
miR-186	4444	4451	1A,m8	hsa-miR-186	CAAAGAAUUCUCCUUUUGGGCUU
miR-196	5728	5735	1A,m8	hsa-miR-196a	UAGGUAGUUUCAUGUUGUUGG
miR-196	5728	5735	1A,m8	hsa-miR-196b	UAGGUAGUUUCCUGUUGUUGG
miR-204/211	985	992	1A,m8	hsa-miR-204^brain	UUCCCUUUGUCAUCCUAUGCCU
				hsa-miR-211	UUCCCUUUGUCAUCCUUCGCCU
				hsa-miR-204^brain	UUCCCUUUGUCAUCCUAUGCCU
				hsa-miR-211	UUCCCUUUGUCAUCCUUCGCCU
				hsa-miR-204^brain	UUCCCUUUGUCAUCCUAUGCCU
				hsa-miR-211	UUCCCUUUGUCAUCCUUCGCCU
miR-217	7220	7226	m8	hsa-miR-217	UACUGCAUCAGGAACUGAUUGGAU
miR-217	7220	7226	m8	hsa-miR-217	UACUGCAUCAGGAACUGAUUGGAU
miR-218	5875	5882	1A,m8	hsa-miR-218^brain	UUGUGCUUGAUCUAACCAUGU
miR-223	756	762	m8	hsa-miR-223	UGUCAGUUUGUCAAAUACCCC
miR-224	759	765	1A	hsa-miR-224	CAAGUCACUAGUGGUUCCGUUUA
miR-23	810	816	m8	hsa-miR-23a^brain	AUCACAUUGCCAGGGAUUUCC
miR-23	810	816	m8	hsa-miR-23b^brain	AUCACAUUGCCAGGGAUUACC
miR-25/32/92/363/367	1425	1432	1A,m8	hsa-miR-25^brain	CAUUGCACUUGUCUCGGUCUGA
				hsa-miR-32	UAUUGCACAUUACUAAGUUGC
				hsa-miR-92	UAUUGCACUUGUCCCGGCCUG
				hsa-miR-367	AAUUGCACUUUAGCAAUGGUGA
				hsa-miR-92b^SZ	UAUUGCACUCGUCCCGGCCUC
miR-27	6234	6240	1A	hsa-miR-27a^brain	UUCACAGUGGCUAAGUUCCGC
				hsa-miR-27b^brain	UUCACAGUGGCUAAGUUCUGC
				hsa-miR-27a^brain	UUCACAGUGGCUAAGUUCCGC
				hsa-miR-27b^brain	UUCACAGUGGCUAAGUUCUGC
miR-323	810	816	1A	hsa-miR-323^brain	GCACAUUACACGGUCGACCUCU
miR-324-3p	5779	5785	1A	hsa-miR-324-3p	CCACUGCCCCAGGUGCUGCUGG
miR-324-5p	5775	5781	1A	hsa-miR-324-5p	CGCAUCCCCUAGGGCAUUGGUGU
miR-328	5264	5271	1A,m8	hsa-miR-328^brain	CUGGCCCUCUCUGCCCUUCCGU
miR-33	1493	1499	m8	hsa-miR-33	GUGCAUUGUAGUUGCAUUG
miR-33	1493	1499	m8	hsa-miR-33b	GUGCAUUGCUGUUGCAUUGCA
miR-330	4548	4554	m8	hsa-miR-330^brain	GCAAAGCACACGGCCUGCAGAGA
miR-376c	7122	7128	1A	hsa-miR-376c	AACAUAGAGGAAAUUCCACG
miR-381	5315	5321	1A	hsa-miR-381	UAUACAAGGGCAAGCUCUCUGU
miR-383	7144	7150	1A	hsa-miR-383^brain	AGAUCAGAAGGUGAUUGUGGCU
miR-421	5119	5125	1A	hsa-miR-421	GGCCUCAUUAAAUGUUUGUUG
miR-448	4700	4706	m8	hsa-miR-448	UUGCAUAUGUAGGAUGUCCCAU
miR-455	1396	1403	1A,m8	hsa-miR-455	UAUGUGCCUUUGGACUACAUCG
miR-485-3p	7070	7076	m8	hsa-miR-485-3p	GUCAUACACGGCUCUCCUCUCU
miR-490	6818	6824	m8	hsa-miR-490	CAACCUGGAGGACUCCAUGCUG
miR-493-5p	725	731	1A	hsa-miR-493-5p	UUGUACAUGGUAGGCUUUCAUU
miR-499	4256	4262	m8	hsa-miR-499	UUAAGACUUGCAGUGAUGUUUAA
miR-539	1414	1420	1A	hsa-miR-539	GGAGAAAUUAUCCUUGGUGUGU
				hsa-miR-539	GGAGAAAUUAUCCUUGGUGUGU
				hsa-miR-539	GGAGAAAUUAUCCUUGGUGUGU
miR-543	4673	4679	1A	hsa-miR-543	AAACAUUCGCGGUGCACUUCU

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.