Gene Page: SYCP1

Summary
GeneID  6847
Symbol  SYCP1
Synonyms  HOM-TES-14|MGC104417|SCP1
Description  synaptonemal complex protein 1
See related  HGNC:11487|MIM:602162|Ensembl:ENSG00000198765|HPRD:03698|
Locus tag  -
Gene type  protein-coding
Map location  1p13-p12
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
GSMA_Igenome scan meta-analysisPsr: 0.0235 
GSMA_IIAgenome scan meta-analysis (All samples)Psr: 0.00814 
GO_AnnotationMapping neuro-related keywords to Gene Ontology annotationsHits with neuro-related keywords: 2 
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
STK32B0.870.80
CCBE10.860.74
AKAP70.840.77
PROM10.830.74
L3MBTL30.830.79
NKAIN20.830.67
KLF60.820.78
AXIN20.820.79
RPRM0.800.77
CSRP20.800.74
Top 10 negatively co-expressed genes
FAM162A-0.56-0.64
HLA-F-0.55-0.69
AIFM3-0.55-0.68
ALDOC-0.55-0.66
REEP6-0.55-0.45
CLU-0.55-0.66
TSC22D4-0.54-0.69
ACOT13-0.54-0.64
HEPN1-0.54-0.66
FBXO2-0.53-0.64
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0003677DNA bindingTAS1464329 
GO:0005515protein bindingIEA-
GO:0005515protein bindingISS15944401 
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0007130synaptonemal complex assemblyIEASynap (GO term level: 11)-
GO:0007130synaptonemal complex assemblyISSSynap (GO term level: 11)15944401 
GO:0007131reciprocal meiotic recombinationTAS1464329 
GO:0007283spermatogenesisTAS1464329 
GO:0007049cell cycleIEA-
GO:0007126meiosisIEA-
GO:0051301cell divisionIEA-
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0000801central elementIEA-
GO:0000802transverse filamentIEA-
GO:0005634nucleusIEA-
 
Pathway annotation
Pathway namePathway size# SZGR genes in pathwayInfo
REACTOME_MEIOSIS 11681All SZGR genes in this pathway
REACTOME_CELL_CYCLE 421253All SZGR genes in this pathway
REACTOME_CHROMOSOME_MAINTENANCE 12280All SZGR genes in this pathway
REACTOME_MEIOTIC_SYNAPSIS 7357All SZGR genes in this pathway
ZHOU_INFLAMMATORY_RESPONSE_LIVE_DN 384220All SZGR genes in this pathway
KINSEY_TARGETS_OF_EWSR1_FLII_FUSION_UP 1278748All SZGR genes in this pathway
FARMER_BREAST_CANCER_APOCRINE_VS_LUMINAL 326213All SZGR genes in this pathway
FARMER_BREAST_CANCER_APOCRINE_VS_BASAL 330217All SZGR genes in this pathway
WEI_MYCN_TARGETS_WITH_E_BOX 795478All SZGR genes in this pathway
SU_TESTIS 7653All SZGR genes in this pathway
BROWNE_HCMV_INFECTION_48HR_DN 504323All SZGR genes in this pathway
SMID_BREAST_CANCER_RELAPSE_IN_BONE_DN 315197All SZGR genes in this pathway
WEBER_METHYLATED_HCP_IN_FIBROBLAST_DN 4222All SZGR genes in this pathway
WEBER_METHYLATED_HCP_IN_SPERM_DN 2813All SZGR genes in this pathway
MATZUK_MEIOTIC_AND_DNA_REPAIR 3926All SZGR genes in this pathway
MATZUK_SPERMATOCYTE 7255All SZGR genes in this pathway
MEISSNER_NPC_HCP_WITH_H3_UNMETHYLATED 536296All SZGR genes in this pathway
MEISSNER_BRAIN_HCP_WITH_H3_UNMETHYLATED 3721All SZGR genes in this pathway
MIKKELSEN_MEF_HCP_WITH_H3_UNMETHYLATED 228119All SZGR genes in this pathway
KIM_GLIS2_TARGETS_UP 8461All SZGR genes in this pathway
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-1863203271A,m8hsa-miR-186CAAAGAAUUCUCCUUUUGGGCUU
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


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