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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

Gene Ranking Integration

Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: SYT5

Summary

GeneID

6861

Symbol

SYT5

Synonyms

Description

synaptotagmin V

Locus tag

Gene type

protein-coding

Map location

19q|11p

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GO_Annotation

Mapping neuro-related keywords to Gene Ontology annotations

Hits with neuro-related keywords: 4

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

WDR85

0.87

0.85

RHOT2

0.87

0.84

FBXL6

0.87

TUBGCP6

0.86

0.85

ANKS3

0.86

RP3-402G11.1

0.86

0.82

RFNG

0.85

0.87

ZNF276

0.85

CPT1B

0.85

0.81

CDK9

0.85

0.82

Top 10 negatively co-expressed genes

AF347015.31

-0.58

AF347015.27

-0.57

-0.58

AF347015.21

-0.55

-0.64

MT-CO2

-0.54

-0.56

MT-CYB

-0.54

AF347015.8

-0.53

-0.55

MT-ATP8

-0.50

-0.61

AF347015.15

-0.50

-0.52

AF347015.33

-0.49

-0.51

AF347015.2

-0.49

-0.53

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005509

calcium ion binding

IEA

GO:0005215

transporter activity

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0007268

synaptic transmission

TAS

neuron, Synap, Neurotransmitter (GO term level: 6)

9177789

GO:0006810

transport

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0043025

cell soma

IEA

axon, dendrite (GO term level: 4)

GO:0008021

synaptic vesicle

IEA

Synap, Neurotransmitter (GO term level: 12)

GO:0043005

neuron projection

IEA

neuron, axon, neurite, dendrite (GO term level: 5)

GO:0045202

synapse

IEA

neuron, Synap, Neurotransmitter, Glial (GO term level: 2)

GO:0055038

recycling endosome membrane

IEA

GO:0005794

Golgi apparatus

IDA

18029348

GO:0005768

endosome

IEA

GO:0016020

membrane

IEA

GO:0016021

integral to membrane

IEA

GO:0048471

perinuclear region of cytoplasm

IEA

GO:0030054

cell junction

IEA

GO:0031410

cytoplasmic vesicle

IEA

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
NRXN1	DKFZp313P2036 \| FLJ35941 \| Hs.22998 \| KIAA0578	neurexin 1	-	HPRD	8901523
SYNCRIP	GRY-RBP \| HNRPQ1 \| NSAP1 \| RP1-3J17.2 \| dJ3J17.2 \| hnRNP-Q \| pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	-	HPRD	10734137
SYT5	-	synaptotagmin V	-	HPRD,BioGRID	10531343

Pathway annotation

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-219	293	300	1A,m8	hsa-miR-219^brain	UGAUUGUCCAAACGCAAUUCU
miR-330	287	294	1A,m8	hsa-miR-330^brain	GCAAAGCACACGGCCUGCAGAGA

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.