Summary ?
GeneID7431
SymbolVIM
SynonymsCTRCT30|HEL113
Descriptionvimentin
ReferenceMIM:193060|HGNC:HGNC:12692|Ensembl:ENSG00000026025|HPRD:01899|Vega:OTTHUMG00000017744
Gene typeprotein-coding
Map location10p13
Pascal p-value0.213
Sherlock p-value0.264
Fetal beta2.193
eGeneAnterior cingulate cortex BA24
Cortex
Myers' cis & trans
SupportG2Cdb.human_BAYES-COLLINS-HUMAN-PSD-CONSENSUS
G2Cdb.human_BAYES-COLLINS-HUMAN-PSD-FULL
G2Cdb.human_BAYES-COLLINS-MOUSE-PSD-CONSENSUS
CompositeSet

Gene in Data Sources
Gene set name Method of gene setDescriptionInfo
CV:PGCnpGenome-wide Association StudyGWAS
PMID:cooccurHigh-throughput literature-searchSystematic search in PubMed for genes co-occurring with SCZ keywords. A total of 3027 genes were included.
LiteratureHigh-throughput literature-searchCo-occurance with Schizophrenia keywords: schizophrenia,schizophrenic,schizophrenics,schizophreniasClick to show details

Section I. Genetics and epigenetics annotation

@eQTL annotation

SNP IDChromosomePositioneGeneGene Entrez IDpvalueqvalueTSS distanceeQTL type
rs9451867chr692659609VIM74310trans
rs2199402chr89201002VIM74310.05trans
rs7841407chr89243427VIM74310.01trans
rs7007515chr8117444193VIM74310.15trans
snp_a-21518920VIM74310.15trans
rs17073665chr1381541961VIM74310.04trans
rs11873703chr1861448702VIM74310.11trans
rs70840571017048022VIMENSG00000026025.92.49916E-60.05-222236gtex_brain_ba24

Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression during devlopment (BrainCloud)

Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

Top co-expressed genes in brain regions

Top 10 positively co-expressed genes
GenePearson's Correlation Spearman's Correlation
FGFR10.680.58
MTTP0.650.55
VANGL10.640.59
TMEM470.630.67
PLEKHG10.620.54
TNFRSF190.620.54
CTNNB10.610.66
LATS20.600.49
GNS0.600.75
MDFIC0.600.56
Top 10 negatively co-expressed genes
GenePearson's Correlation Spearman's Correlation
AF347015.31-0.32-0.41
MT-CO2-0.32-0.41
AF347015.21-0.31-0.42
HIGD1B-0.30-0.40
AC098691.2-0.30-0.48
FXYD1-0.30-0.34
CXCL14-0.30-0.34
AF347015.33-0.29-0.34
AF347015.2-0.29-0.35
S100A13-0.29-0.36

Section III. Gene Ontology annotation

Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0005515protein bindingIDA11889032 
GO:0005515protein bindingIPI11827972 
GO:0005200structural constituent of cytoskeletonIDA11889032 
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0006928cell motionTAS16130169 
GO:0044419interspecies interaction between organismsIEA-
GO:0045103intermediate filament-based processIEA-
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0005856cytoskeletonTAS16130169 
GO:0005882intermediate filamentIDA11889032 
GO:0005737cytoplasmIDA9150946 

Section IV. Protein-protein interaction annotation

InteractorsAliases BOfficial full name BExperimentalSourcePubMed ID
ABLIM1ABLIM | DKFZp781D0148 | FLJ14564 | KIAA0059 | LIMAB1 | LIMATIN | MGC1224actin binding LIM protein 1Two-hybridBioGRID16189514 
ALS2CR11FLJ25351 | FLJ40332amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 11Two-hybridBioGRID16189514 
APIPAPIP2 | CGI-29 | MMRP19 | dJ179L10.2APAF1 interacting proteinTwo-hybridBioGRID16189514 
ARS2ASR2 | MGC126427arsenate resistance protein 2Two-hybridBioGRID16169070 
ATN1B37 | D12S755E | DRPLA | NODatrophin 1Two-hybridBioGRID16169070 
BFSP1CP115 | CP94 | FILENSIN | LIFL-Hbeaded filament structural protein 1, filensin-HPRD,BioGRID1478967 |1918147 
BHLHB2DEC1 | SHARP-2 | STRA13 | Stra14 | bHLHe40basic helix-loop-helix domain containing, class B, 2Two-hybridBioGRID16169070 
BRD1BRL | BRPF1 | BRPF2 | DKFZp686F0325bromodomain containing 1Two-hybridBioGRID16169070 
C1orf103FLJ11269 | RIF1 | RP11-96K19.1chromosome 1 open reading frame 103Two-hybridBioGRID16169070 
C7orf36GK003chromosome 7 open reading frame 36Two-hybridBioGRID16169070 
CAPN1CANP | CANP1 | CANPL1 | muCANP | muCLcalpain 1, (mu/I) large subunitCAPN1 interacts with VIM.BIND12358155 
CASP8ALPS2B | CAP4 | FLICE | FLJ17672 | MACH | MCH5 | MGC78473caspase 8, apoptosis-related cysteine peptidaseTwo-hybridBioGRID16169070 
CDH57B4 | CD144 | FLJ17376cadherin 5, type 2 (vascular endothelium)-HPRD,BioGRID12003790 
CRCT1C1orf42 | NICE-1cysteine-rich C-terminal 1Two-hybridBioGRID16169070 
CREB1CREB | MGC9284cAMP responsive element binding protein 1Two-hybridBioGRID16169070 
DCTN1DAP-150 | DP-150 | HMN7B | P135dynactin 1 (p150, glued homolog, Drosophila)-HPRD,BioGRID14600259 
DIS3L2FAM6A | FLJ36974 | MGC42174DIS3 mitotic control homolog (S. cerevisiae)-like 2Two-hybridBioGRID16169070 
DPPA42410091M23Rik | FLJ10713developmental pluripotency associated 4Two-hybridBioGRID16169070 
DSPDPI | DPIIdesmoplakin-HPRD,BioGRID9261168 
DYNLL1DLC1 | DLC8 | DNCL1 | DNCLC1 | LC8 | LC8a | MGC126137 | MGC126138 | PIN | hdlc1dynein, light chain, LC8-type 1-HPRD14760703 
FABP4A-FABP | aP2fatty acid binding protein 4, adipocyteTwo-hybridBioGRID16169070 
FAM107ADRR1 | FLJ30158 | FLJ45473 | TU3Afamily with sequence similarity 107, member ATwo-hybridBioGRID16189514 
FUBP1FBP | FUBPfar upstream element (FUSE) binding protein 1Two-hybridBioGRID16169070 
GFAPFLJ45472glial fibrillary acidic proteinTwo-hybridBioGRID16189514 
GOPCCAL | FIG | GOPC1 | PIST | dJ94G16.2golgi associated PDZ and coiled-coil motif containingTwo-hybridBioGRID16189514 
HABP4IHABP4 | Ki-1/57 | MGC825 | SERBP1Lhyaluronan binding protein 4Two-hybridBioGRID16169070 
HMG20BBRAF25 | BRAF35 | FLJ26127 | HMGX2 | PP7706 | SMARCE1r | SOXL | pp8857high-mobility group 20BTwo-hybridBioGRID16169070 
IVNS1ABPDKFZp686K06216 | FLARA3 | FLJ10069 | FLJ10411 | FLJ10962 | FLJ35593 | FLJ36593 | HSPC068 | KIAA0850 | ND1 | NS-1 | NS1-BP | NS1BPinfluenza virus NS1A binding proteinTwo-hybridBioGRID16169070 
KIAA0408FLJ43995 | RP3-403A15.2KIAA0408Two-hybridBioGRID16189514 
KIF15FLJ25667 | HKLP2 | KNSL7 | NY-BR-62kinesin family member 15Two-hybridBioGRID16169070 
KRT20CD20 | CK20 | K20 | KRT21 | MGC35423keratin 20Two-hybridBioGRID16189514 
LORMGC111513loricrinTwo-hybridBioGRID16169070 
MAFGMGC13090 | MGC20149v-maf musculoaponeurotic fibrosarcoma oncogene homolog G (avian)Two-hybridBioGRID16169070 
MAN2A2MANA2Xmannosidase, alpha, class 2A, member 2Two-hybridBioGRID16169070 
MEN1MEAI | SCG2multiple endocrine neoplasia Imenin interacts with vimentinBIND12169273 
MEN1MEAI | SCG2multiple endocrine neoplasia I-HPRD,BioGRID12169273 
MICAL1DKFZp434B1517 | FLJ11937 | FLJ21739 | MICAL | MICAL-1 | NICALmicrotubule associated monoxygenase, calponin and LIM domain containing 1-HPRD,BioGRID11827972 
MRPL44FLJ12701 | FLJ13990 | FLJ37688 | L44MT | MRP-L44mitochondrial ribosomal protein L44Two-hybridBioGRID16169070 
MYST2HBO1 | HBOA | KAT7MYST histone acetyltransferase 2Two-hybridBioGRID16169070 |16189514 
NFATC2KIAA0611 | NFAT1 | NFATPnuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2Two-hybridBioGRID16169070 
NIF3L1ALS2CR1 | CALS-7 | MDS015NIF3 NGG1 interacting factor 3-like 1 (S. pombe)Two-hybridBioGRID16189514 
NME2MGC111212 | NDPK-B | NDPKB | NM23-H2 | NM23B | pufnon-metastatic cells 2, protein (NM23B) expressed in-HPRD,BioGRID11082283 
NOC4LMGC3162 | NOC4nucleolar complex associated 4 homolog (S. cerevisiae)Two-hybridBioGRID16189514 
NUP85FLJ12549 | Nup75nucleoporin 85kDa-HPRD12706117 
OSBP2ORP-4 | ORP4 | OSBPL1 | OSBPL4oxysterol binding protein 2-HPRD,BioGRID11802775 
PDLIM1CLIM1 | CLP-36 | CLP36 | hCLIM1PDZ and LIM domain 1Two-hybridBioGRID16189514 
PKN1DBK | MGC46204 | PAK1 | PKN | PKN-ALPHA | PRK1 | PRKCL1protein kinase N1-HPRD,BioGRID9175763 
PKP1B6P | MGC138829plakophilin 1 (ectodermal dysplasia/skin fragility syndrome)-HPRD,BioGRID10852826 
PLEC1EBS1 | EBSO | HD1 | PCN | PLEC1b | PLTNplectin 1, intermediate filament binding protein 500kDa-HPRD,BioGRID3027087 
PPHLN1HSPC206 | HSPC232 | MGC48786periphilin 1-HPRD15383276 
PPLKIAA0568 | MGC134872periplakin-HPRD,BioGRID12366696 
PSMA1HC2 | MGC14542 | MGC14575 | MGC14751 | MGC1667 | MGC21459 | MGC22853 | MGC23915 | NU | PROS30proteasome (prosome, macropain) subunit, alpha type, 1Two-hybridBioGRID16189514 
PSME1IFI5111 | MGC8628 | PA28A | PA28alpha | REGalphaproteasome (prosome, macropain) activator subunit 1 (PA28 alpha)Two-hybridBioGRID16169070 
PUF60FIR | FLJ31379 | RoBPI | SIAHBP1poly-U binding splicing factor 60KDaTwo-hybridBioGRID16169070 
RAB8BFLJ38125RAB8B, member RAS oncogene family-HPRD,BioGRID12639940 
RABAC1PRA1 | PRAF1 | YIP3Rab acceptor 1 (prenylated)Two-hybridBioGRID16169070 
RAD51BRCC5 | HRAD51 | HsRad51 | HsT16930 | RAD51A | RECARAD51 homolog (RecA homolog, E. coli) (S. cerevisiae)Two-hybridBioGRID16169070 
RIBC2C22orf11RIB43A domain with coiled-coils 2Two-hybridBioGRID16189514 
SDCCAG3NY-CO-3serologically defined colon cancer antigen 3Two-hybridBioGRID16169070 
SERBP1CGI-55 | CHD3IP | DKFZp564M2423 | FLJ90489 | HABP4L | PAI-RBP1 | PAIRBP1SERPINE1 mRNA binding protein 1Two-hybridBioGRID16169070 
SH3YL1DKFZp586F1318 | FLJ39121 | RaySH3 domain containing, Ysc84-like 1 (S. cerevisiae)Two-hybridBioGRID16169070 
SIRT6SIR2L6sirtuin (silent mating type information regulation 2 homolog) 6 (S. cerevisiae)Two-hybridBioGRID16169070 
SLC25A6AAC3 | ANT3 | ANT3Y | MGC17525solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6Two-hybridBioGRID16169070 
SLC27A6ACSVL2 | DKFZp779M0564 | FACVL2 | FATP6 | VLCS-H1solute carrier family 27 (fatty acid transporter), member 6Two-hybridBioGRID16169070 
STX1AHPC-1 | STX1 | p35-1syntaxin 1A (brain)Two-hybridBioGRID16169070 
SUMO2HSMT3 | MGC117191 | SMT3B | SMT3H2SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)Two-hybridBioGRID16169070 
SUMO3SMT3A | SMT3H1 | SUMO-3SMT3 suppressor of mif two 3 homolog 3 (S. cerevisiae)Two-hybridBioGRID16169070 
SYN1SYN1a | SYN1b | SYNIsynapsin ITwo-hybridBioGRID16169070 
TCHPMGC10854trichoplein, keratin filament bindingTwo-hybridBioGRID16189514 
TNFRSF14ATAR | HVEA | HVEM | LIGHTR | TR2tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)Two-hybridBioGRID16169070 
TRADDHs.89862 | MGC11078TNFRSF1A-associated via death domain-HPRD14743216 
TRIM28FLJ29029 | KAP1 | RNF96 | TF1B | TIF1Btripartite motif-containing 28Two-hybridBioGRID16169070 
TRIM29ATDC | FLJ36085tripartite motif-containing 29-HPRD7644499 
TRIOBPDFNB28 | FLJ39315 | HRIHFB2122 | KIAA1662 | TARA | dJ37E16.4TRIO and F-actin binding proteinTwo-hybridBioGRID16169070 
TTRHsT2651 | PALB | TBPAtransthyretinTwo-hybridBioGRID16169070 
TUBGCP476P | FLJ14797 | GCP4tubulin, gamma complex associated protein 4Two-hybridBioGRID16189514 
TXNDKFZp686B1993 | MGC61975 | TRX | TRX1thioredoxinTwo-hybridBioGRID12099690 
UPP1UDRPASE | UP | UPASE | UPPuridine phosphorylase 1-HPRD,BioGRID11278417 
UPP2UDRPASE2 | UP2 | UPASE2uridine phosphorylase 2-HPRD,BioGRID11278417 
VIMFLJ36605vimentin-HPRD,BioGRID11243787 |11889032 
WBP11DKFZp779M1063 | NPWBP | SIPP1WW domain binding protein 11-HPRD11375989 
XRCC4-X-ray repair complementing defective repair in Chinese hamster cells 4Two-hybridBioGRID16169070 
YWHAZKCIP-1 | MGC111427 | MGC126532 | MGC138156tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide-HPRD,BioGRID10887173 


Section V. Pathway annotation

Pathway namePathway size# SZGR 2.0 genes in pathwayInfo
PID AURORA B PATHWAY 3924All SZGR 2.0 genes in this pathway
PID CASPASE PATHWAY 5239All SZGR 2.0 genes in this pathway
REACTOME APOPTOTIC CLEAVAGE OF CELLULAR PROTEINS 4026All SZGR 2.0 genes in this pathway
REACTOME CASPASE MEDIATED CLEAVAGE OF CYTOSKELETAL PROTEINS 1311All SZGR 2.0 genes in this pathway
REACTOME STRIATED MUSCLE CONTRACTION 2712All SZGR 2.0 genes in this pathway
REACTOME MUSCLE CONTRACTION 4824All SZGR 2.0 genes in this pathway
REACTOME APOPTOSIS 14894All SZGR 2.0 genes in this pathway
REACTOME APOPTOTIC EXECUTION PHASE 5437All SZGR 2.0 genes in this pathway
HOLLMANN APOPTOSIS VIA CD40 DN 267178All SZGR 2.0 genes in this pathway
ZHOU INFLAMMATORY RESPONSE LIVE UP 485293All SZGR 2.0 genes in this pathway
HOOI ST7 TARGETS DN 12378All SZGR 2.0 genes in this pathway
CHARAFE BREAST CANCER LUMINAL VS MESENCHYMAL DN 460312All SZGR 2.0 genes in this pathway
KINSEY TARGETS OF EWSR1 FLII FUSION DN 329219All SZGR 2.0 genes in this pathway
RODRIGUES THYROID CARCINOMA POORLY DIFFERENTIATED DN 805505All SZGR 2.0 genes in this pathway
OLSSON E2F3 TARGETS DN 4933All SZGR 2.0 genes in this pathway
OHASHI AURKB TARGETS 106All SZGR 2.0 genes in this pathway
HONRADO BREAST CANCER BRCA1 VS BRCA2 1812All SZGR 2.0 genes in this pathway
PATIL LIVER CANCER 747453All SZGR 2.0 genes in this pathway
TSUNODA CISPLATIN RESISTANCE UP 157All SZGR 2.0 genes in this pathway
LIEN BREAST CARCINOMA METAPLASTIC VS DUCTAL UP 8351All SZGR 2.0 genes in this pathway
CALVET IRINOTECAN SENSITIVE VS REVERTED UP 55All SZGR 2.0 genes in this pathway
KHETCHOUMIAN TRIM24 TARGETS UP 4738All SZGR 2.0 genes in this pathway
FRIDMAN SENESCENCE UP 7760All SZGR 2.0 genes in this pathway
WU CELL MIGRATION 184114All SZGR 2.0 genes in this pathway
BENPORATH NANOG TARGETS 988594All SZGR 2.0 genes in this pathway
BENPORATH SOX2 TARGETS 734436All SZGR 2.0 genes in this pathway
JECHLINGER EPITHELIAL TO MESENCHYMAL TRANSITION UP 7151All SZGR 2.0 genes in this pathway
DORSAM HOXA9 TARGETS UP 3525All SZGR 2.0 genes in this pathway
IIZUKA LIVER CANCER EARLY RECURRENCE 1110All SZGR 2.0 genes in this pathway
FLECHNER BIOPSY KIDNEY TRANSPLANT OK VS DONOR UP 555346All SZGR 2.0 genes in this pathway
FERRANDO T ALL WITH MLL ENL FUSION UP 8767All SZGR 2.0 genes in this pathway
LEI MYB TARGETS 318215All SZGR 2.0 genes in this pathway
THEILGAARD NEUTROPHIL AT SKIN WOUND DN 225163All SZGR 2.0 genes in this pathway
JIANG AGING CEREBRAL CORTEX UP 3627All SZGR 2.0 genes in this pathway
WESTON VEGFA TARGETS 6HR 5938All SZGR 2.0 genes in this pathway
HARRIS HYPOXIA 8164All SZGR 2.0 genes in this pathway
KAAB HEART ATRIUM VS VENTRICLE UP 249170All SZGR 2.0 genes in this pathway
CUI TCF21 TARGETS 2 DN 830547All SZGR 2.0 genes in this pathway
WESTON VEGFA TARGETS 12HR 3523All SZGR 2.0 genes in this pathway
WESTON VEGFA TARGETS 10871All SZGR 2.0 genes in this pathway
APRELIKOVA BRCA1 TARGETS 4933All SZGR 2.0 genes in this pathway
LU AGING BRAIN UP 262186All SZGR 2.0 genes in this pathway
LEE AGING NEOCORTEX UP 8959All SZGR 2.0 genes in this pathway
RODWELL AGING KIDNEY UP 487303All SZGR 2.0 genes in this pathway
BAELDE DIABETIC NEPHROPATHY DN 434302All SZGR 2.0 genes in this pathway
ZHONG SECRETOME OF LUNG CANCER AND ENDOTHELIUM 6647All SZGR 2.0 genes in this pathway
GAVIN FOXP3 TARGETS CLUSTER T7 9863All SZGR 2.0 genes in this pathway
KYNG DNA DAMAGE DN 195135All SZGR 2.0 genes in this pathway
KYNG ENVIRONMENTAL STRESS RESPONSE UP 5641All SZGR 2.0 genes in this pathway
TING SILENCED BY DICER 3117All SZGR 2.0 genes in this pathway
ACEVEDO LIVER CANCER UP 973570All SZGR 2.0 genes in this pathway
LABBE TGFB1 TARGETS UP 10264All SZGR 2.0 genes in this pathway
BRUECKNER TARGETS OF MIRLET7A3 DN 7849All SZGR 2.0 genes in this pathway
MATTHEWS AP1 TARGETS 1712All SZGR 2.0 genes in this pathway
BLUM RESPONSE TO SALIRASIB UP 245159All SZGR 2.0 genes in this pathway
WINTER HYPOXIA METAGENE 242168All SZGR 2.0 genes in this pathway
WANG TUMOR INVASIVENESS UP 374247All SZGR 2.0 genes in this pathway
GU PDEF TARGETS UP 7149All SZGR 2.0 genes in this pathway
CHAUHAN RESPONSE TO METHOXYESTRADIOL DN 10265All SZGR 2.0 genes in this pathway
NUTT GBM VS AO GLIOMA UP 4634All SZGR 2.0 genes in this pathway
YOSHIMURA MAPK8 TARGETS UP 1305895All SZGR 2.0 genes in this pathway
HINATA NFKB TARGETS KERATINOCYTE UP 9163All SZGR 2.0 genes in this pathway
HINATA NFKB TARGETS FIBROBLAST UP 8460All SZGR 2.0 genes in this pathway
CHEN METABOLIC SYNDROM NETWORK 1210725All SZGR 2.0 genes in this pathway
HSIAO HOUSEKEEPING GENES 389245All SZGR 2.0 genes in this pathway
MEISSNER BRAIN HCP WITH H3K4ME3 AND H3K27ME3 1069729All SZGR 2.0 genes in this pathway
ROME INSULIN TARGETS IN MUSCLE UP 442263All SZGR 2.0 genes in this pathway
COULOUARN TEMPORAL TGFB1 SIGNATURE UP 10968All SZGR 2.0 genes in this pathway
LEE LIVER CANCER HEPATOBLAST 1612All SZGR 2.0 genes in this pathway
YAGI AML WITH INV 16 TRANSLOCATION 422277All SZGR 2.0 genes in this pathway
MARSON FOXP3 TARGETS UP 6643All SZGR 2.0 genes in this pathway
NGO MALIGNANT GLIOMA 1P LOH 1713All SZGR 2.0 genes in this pathway
LI INDUCED T TO NATURAL KILLER UP 307182All SZGR 2.0 genes in this pathway
MARTENS TRETINOIN RESPONSE DN 841431All SZGR 2.0 genes in this pathway
KIM ALL DISORDERS OLIGODENDROCYTE NUMBER CORR UP 756494All SZGR 2.0 genes in this pathway
KIM BIPOLAR DISORDER OLIGODENDROCYTE DENSITY CORR UP 682440All SZGR 2.0 genes in this pathway
CHICAS RB1 TARGETS CONFLUENT 567365All SZGR 2.0 genes in this pathway
PILON KLF1 TARGETS DN 19721213All SZGR 2.0 genes in this pathway
JOHNSTONE PARVB TARGETS 3 UP 430288All SZGR 2.0 genes in this pathway
KIM GLIS2 TARGETS UP 8461All SZGR 2.0 genes in this pathway
MIKHAYLOVA OXIDATIVE STRESS RESPONSE VIA VHL UP 76All SZGR 2.0 genes in this pathway
PASINI SUZ12 TARGETS DN 315215All SZGR 2.0 genes in this pathway
VANDESLUIS NORMAL EMBRYOS DN 2513All SZGR 2.0 genes in this pathway
BILANGES RAPAMYCIN SENSITIVE VIA TSC1 AND TSC2 7337All SZGR 2.0 genes in this pathway
TORCHIA TARGETS OF EWSR1 FLI1 FUSION DN 321200All SZGR 2.0 genes in this pathway
KOINUMA TARGETS OF SMAD2 OR SMAD3 824528All SZGR 2.0 genes in this pathway
GOBERT OLIGODENDROCYTE DIFFERENTIATION UP 570339All SZGR 2.0 genes in this pathway
SERVITJA ISLET HNF1A TARGETS UP 163111All SZGR 2.0 genes in this pathway
WAKABAYASHI ADIPOGENESIS PPARG RXRA BOUND 36HR 15288All SZGR 2.0 genes in this pathway
KRIEG HYPOXIA NOT VIA KDM3A 770480All SZGR 2.0 genes in this pathway
HOLLEMAN VINCRISTINE RESISTANCE B ALL DN 1510All SZGR 2.0 genes in this pathway
HOLLEMAN VINCRISTINE RESISTANCE ALL DN 1911All SZGR 2.0 genes in this pathway
LIM MAMMARY STEM CELL UP 489314All SZGR 2.0 genes in this pathway
LIM MAMMARY LUMINAL MATURE DN 9974All SZGR 2.0 genes in this pathway

Section VI. microRNA annotation

miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-124/5068187m8hsa-miR-506UAAGGCACCCUUCUGAGUAGA
hsa-miR-124brainUAAGGCACGCGGUGAAUGCC
miR-13832381Ahsa-miR-138brainAGCUGGUGUUGUGAAUC
miR-30-5p1781841Ahsa-miR-30a-5pUGUAAACAUCCUCGACUGGAAG
hsa-miR-30cbrainUGUAAACAUCCUACACUCUCAGC
hsa-miR-30dSZUGUAAACAUCCCCGACUGGAAG
hsa-miR-30bSZUGUAAACAUCCUACACUCAGCU
hsa-miR-30e-5pUGUAAACAUCCUUGACUGGA