Gene Page: ZNF19
Summary ?
| GeneID | 7567 |
| Symbol | ZNF19 |
| Synonyms | KOX12 |
| Description | zinc finger protein 19 |
| Reference | MIM:194525|HGNC:HGNC:12981|Ensembl:ENSG00000157429|HPRD:01914|Vega:OTTHUMG00000137593 |
| Gene type | protein-coding |
| Map location | 16q22 |
| Pascal p-value | 0.007 |
| eGene | Putamen basal ganglia |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:PGCnp | Genome-wide Association Study | GWAS |
Section I. Genetics and epigenetics annotation
eQTL annotation
| SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
|---|---|---|---|---|---|---|---|---|
| rs2288486 | 16 | 71513034 | ZNF19 | ENSG00000157429.11 | 5.4136E-6 | 0.02 | 85958 | gtex_brain_putamen_basal |
| rs7187165 | 16 | 71524543 | ZNF19 | ENSG00000157429.11 | 2.62629E-6 | 0.02 | 74449 | gtex_brain_putamen_basal |
| rs7188342 | 16 | 71525143 | ZNF19 | ENSG00000157429.11 | 2.62629E-6 | 0.02 | 73849 | gtex_brain_putamen_basal |
| rs7199373 | 16 | 71526730 | ZNF19 | ENSG00000157429.11 | 5.4136E-6 | 0.02 | 72262 | gtex_brain_putamen_basal |
| rs8058294 | 16 | 71527305 | ZNF19 | ENSG00000157429.11 | 4.17414E-6 | 0.02 | 71687 | gtex_brain_putamen_basal |
| rs9935426 | 16 | 71531928 | ZNF19 | ENSG00000157429.11 | 2.62629E-6 | 0.02 | 67064 | gtex_brain_putamen_basal |
| rs11862329 | 16 | 71533443 | ZNF19 | ENSG00000157429.11 | 2.62629E-6 | 0.02 | 65549 | gtex_brain_putamen_basal |
| rs7189440 | 16 | 71534130 | ZNF19 | ENSG00000157429.11 | 5.99779E-6 | 0.02 | 64862 | gtex_brain_putamen_basal |
| rs11861266 | 16 | 71535821 | ZNF19 | ENSG00000157429.11 | 1.94539E-6 | 0.02 | 63171 | gtex_brain_putamen_basal |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
No co-expressed genes in brain regions
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| REACTOME GENERIC TRANSCRIPTION PATHWAY | 352 | 181 | All SZGR 2.0 genes in this pathway |
| DODD NASOPHARYNGEAL CARCINOMA UP | 1821 | 933 | All SZGR 2.0 genes in this pathway |
| XU GH1 EXOGENOUS TARGETS DN | 120 | 69 | All SZGR 2.0 genes in this pathway |