Gene Page: FAM184A
Summary ?
| GeneID | 79632 |
| Symbol | FAM184A |
| Synonyms | C6orf60 |
| Description | family with sequence similarity 184 member A |
| Reference | HGNC:HGNC:20991|Ensembl:ENSG00000111879|HPRD:09856|Vega:OTTHUMG00000015471 |
| Gene type | protein-coding |
| Map location | 6q22.31 |
| Pascal p-value | 5.769E-4 |
| Sherlock p-value | 0.128 |
| eGene | Cortex Meta |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:PGCnp | Genome-wide Association Study | GWAS |
Section I. Genetics and epigenetics annotation
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
Top co-expressed genes in brain regions
| Top 10 positively co-expressed genes | ||
| Gene | Pearson's Correlation | Spearman's Correlation |
| MARVELD2 | 0.72 | 0.55 |
| ABCC9 | 0.70 | 0.65 |
| ANO6 | 0.68 | 0.69 |
| FAM154B | 0.68 | 0.37 |
| C6orf97 | 0.68 | 0.43 |
| GNG12 | 0.68 | 0.57 |
| DNAH9 | 0.68 | 0.33 |
| MDFIC | 0.68 | 0.49 |
| ARMC4 | 0.67 | 0.37 |
| CERKL | 0.67 | 0.33 |
| Top 10 negatively co-expressed genes | ||
| Gene | Pearson's Correlation | Spearman's Correlation |
| AL022328.1 | -0.26 | -0.34 |
| TTC9B | -0.26 | -0.29 |
| AC044839.2 | -0.25 | -0.32 |
| AF347015.21 | -0.25 | -0.27 |
| TMEM160 | -0.25 | -0.30 |
| FAM128A | -0.25 | -0.29 |
| HES4 | -0.25 | -0.33 |
| FAM173A | -0.24 | -0.28 |
| MRPL41 | -0.24 | -0.33 |
| AL353354.3 | -0.24 | -0.19 |
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| ONKEN UVEAL MELANOMA DN | 526 | 357 | All SZGR 2.0 genes in this pathway |
| DODD NASOPHARYNGEAL CARCINOMA UP | 1821 | 933 | All SZGR 2.0 genes in this pathway |
| PEREZ TP53 TARGETS | 1174 | 695 | All SZGR 2.0 genes in this pathway |
| DAWSON METHYLATED IN LYMPHOMA TCL1 | 59 | 45 | All SZGR 2.0 genes in this pathway |
| SHEDDEN LUNG CANCER GOOD SURVIVAL A4 | 196 | 124 | All SZGR 2.0 genes in this pathway |
| MIKKELSEN MCV6 HCP WITH H3K27ME3 | 435 | 318 | All SZGR 2.0 genes in this pathway |
| LIM MAMMARY STEM CELL UP | 489 | 314 | All SZGR 2.0 genes in this pathway |
| ZWANG TRANSIENTLY UP BY 1ST EGF PULSE ONLY | 1839 | 928 | All SZGR 2.0 genes in this pathway |