Gene Page: GTDC1

Summary
GeneID  79712
Symbol  GTDC1
Synonyms  mat-Xa
Description  glycosyltransferase-like domain containing 1
See related  HGNC:20887|MIM:610165|Ensembl:ENSG00000121964|HPRD:13615|
Locus tag  -
Gene type  protein-coding
Map location  2q22.2-q22.3
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
GSMA_Igenome scan meta-analysisPsr: 0.023 
GSMA_IIAgenome scan meta-analysis (All samples)Psr: 0.02395 
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
GDA0.730.60
MYRIP0.710.60
PTPRR0.700.62
TRHDE0.700.60
RP4-788L13.10.700.57
DLGAP20.700.60
CLOCK0.690.56
NETO10.690.65
GRIN2A0.690.55
GLRA30.680.55
Top 10 negatively co-expressed genes
NUDT8-0.36-0.37
BCL7C-0.33-0.36
EMX2-0.32-0.41
NT5C-0.31-0.31
ACP6-0.31-0.30
GRTP1-0.31-0.31
MUTYH-0.30-0.32
AC132872.1-0.30-0.33
IMPA2-0.30-0.35
RDH5-0.30-0.22
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0016757transferase activity, transferring glycosyl groupsIEA-
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0009058biosynthetic processIEA-
 
Pathway annotation
Pathway namePathway size# SZGR genes in pathwayInfo
THUM_SYSTOLIC_HEART_FAILURE_UP 423283All SZGR genes in this pathway
GRABARCZYK_BCL11B_TARGETS_DN 5735All SZGR genes in this pathway
WANG_LMO4_TARGETS_UP 372227All SZGR genes in this pathway
MULLIGHAN_MLL_SIGNATURE_1_DN 242165All SZGR genes in this pathway
SENESE_HDAC3_TARGETS_UP 501327All SZGR genes in this pathway
XU_HGF_TARGETS_REPRESSED_BY_AKT1_DN 9558All SZGR genes in this pathway
NUYTTEN_NIPP1_TARGETS_DN 848527All SZGR genes in this pathway
NUYTTEN_EZH2_TARGETS_DN 1024594All SZGR genes in this pathway
MOREAUX_MULTIPLE_MYELOMA_BY_TACI_UP 412249All SZGR genes in this pathway
ZHENG_BOUND_BY_FOXP3 491310All SZGR genes in this pathway
KYNG_WERNER_SYNDROM_AND_NORMAL_AGING_UP 9362All SZGR genes in this pathway
CHANDRAN_METASTASIS_DN 306191All SZGR genes in this pathway
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-129-5p2742801Ahsa-miR-129brainCUUUUUGCGGUCUGGGCUUGC
hsa-miR-129-5pCUUUUUGCGGUCUGGGCUUGCU
miR-132/212267273m8hsa-miR-212SZUAACAGUCUCCAGUCACGGCC
hsa-miR-132brainUAACAGUCUACAGCCAUGGUCG
miR-186390396m8hsa-miR-186CAAAGAAUUCUCCUUUUGGGCUU
miR-3812943001Ahsa-miR-381UAUACAAGGGCAAGCUCUCUGU
miR-38375811Ahsa-miR-383brainAGAUCAGAAGGUGAUUGUGGCU
miR-4904704771A,m8hsa-miR-490CAACCUGGAGGACUCCAUGCUG
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


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