Gene Page

Gene Page: SNX27

Summary

GeneID

81609

Symbol

SNX27

Synonyms

KIAA0488|MGC126871|MGC126873|MGC20471|MRT1|MY014

Description

sorting nexin family member 27

Locus tag

Gene type

protein-coding

Map location

1q21.3

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GSMA_I

genome scan meta-analysis

Psr: 0.0235

GSMA_IIA

genome scan meta-analysis (All samples)

Psr: 0.00814

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005515

protein binding

IEA

GO:0035091

phosphoinositide binding

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0007165

signal transduction

IEA

GO:0015031

protein transport

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005737

cytoplasm

IEA

GO:0005769

early endosome

IEA

Pathway annotation

Pathway name	Pathway size	# SZGR genes in pathway	Info
CHARAFE_BREAST_CANCER_LUMINAL_VS_BASAL_UP	380	215	All SZGR genes in this pathway
PATIL_LIVER_CANCER	747	453	All SZGR genes in this pathway
MOHANKUMAR_TLX1_TARGETS_UP	414	287	All SZGR genes in this pathway
SHEPARD_BMYB_MORPHOLINO_UP	205	126	All SZGR genes in this pathway
BROWNE_HCMV_INFECTION_18HR_UP	178	111	All SZGR genes in this pathway
DOUGLAS_BMI1_TARGETS_UP	566	371	All SZGR genes in this pathway
POS_RESPONSE_TO_HISTAMINE_UP	13	10	All SZGR genes in this pathway
ACEVEDO_LIVER_TUMOR_VS_NORMAL_ADJACENT_TISSUE_UP	863	514	All SZGR genes in this pathway
ICHIBA_GRAFT_VERSUS_HOST_DISEASE_D7_DN	40	22	All SZGR genes in this pathway
CHEN_METABOLIC_SYNDROM_NETWORK	1210	725	All SZGR genes in this pathway
BRUINS_UVC_RESPONSE_LATE	1137	655	All SZGR genes in this pathway
TERAO_AOX4_TARGETS_HG_UP	28	20	All SZGR genes in this pathway
PEDERSEN_METASTASIS_BY_ERBB2_ISOFORM_7	403	240	All SZGR genes in this pathway

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-130/301	1166	1172	m8	hsa-miR-130a^brain	CAGUGCAAUGUUAAAAGGGCAU
				hsa-miR-301	CAGUGCAAUAGUAUUGUCAAAGC
				hsa-miR-130b^brain	CAGUGCAAUGAUGAAAGGGCAU
				hsa-miR-454-3p	UAGUGCAAUAUUGCUUAUAGGGUUU
miR-141/200a	4070	4076	m8	hsa-miR-141	UAACACUGUCUGGUAAAGAUGG
miR-141/200a	4070	4076	m8	hsa-miR-200a	UAACACUGUCUGGUAACGAUGU
miR-145	1141	1148	1A,m8	hsa-miR-145	GUCCAGUUUUCCCAGGAAUCCCUU
miR-148/152	1167	1173	m8	hsa-miR-148a	UCAGUGCACUACAGAACUUUGU
				hsa-miR-152^brain	UCAGUGCAUGACAGAACUUGGG
				hsa-miR-148b	UCAGUGCAUCACAGAACUUUGU
miR-183	1483	1489	1A	hsa-miR-183	UAUGGCACUGGUAGAAUUCACUG
miR-186	5446	5452	m8	hsa-miR-186	CAAAGAAUUCUCCUUUUGGGCUU
miR-19	1165	1171	m8	hsa-miR-19a	UGUGCAAAUCUAUGCAAAACUGA
miR-19	1165	1171	m8	hsa-miR-19b	UGUGCAAAUCCAUGCAAAACUGA
miR-205	1403	1410	1A,m8	hsa-miR-205	UCCUUCAUUCCACCGGAGUCUG
miR-217	5290	5296	1A	hsa-miR-217	UACUGCAUCAGGAACUGAUUGGAU
miR-23	5325	5332	1A,m8	hsa-miR-23a^brain	AUCACAUUGCCAGGGAUUUCC
miR-23	5325	5332	1A,m8	hsa-miR-23b^brain	AUCACAUUGCCAGGGAUUACC
miR-28	4706	4712	1A	hsa-miR-28^brain	AAGGAGCUCACAGUCUAUUGAG
miR-30-5p	1419	1425	1A	hsa-miR-30a-5p	UGUAAACAUCCUCGACUGGAAG
				hsa-miR-30c^brain	UGUAAACAUCCUACACUCUCAGC
				hsa-miR-30d^SZ	UGUAAACAUCCCCGACUGGAAG
				hsa-miR-30b^SZ	UGUAAACAUCCUACACUCAGCU
				hsa-miR-30e-5p	UGUAAACAUCCUUGACUGGA
miR-323	5325	5331	1A	hsa-miR-323^brain	GCACAUUACACGGUCGACCUCU
miR-376	1149	1155	1A	hsa-miR-376a	AUCAUAGAGGAAAAUCCACGU
miR-376	1149	1155	1A	hsa-miR-376b	AUCAUAGAGGAAAAUCCAUGUU
miR-409-5p	887	893	1A	hsa-miR-409-5p	AGGUUACCCGAGCAACUUUGCA
miR-410	1204	1210	1A	hsa-miR-410	AAUAUAACACAGAUGGCCUGU
miR-433-3p	1401	1407	1A	hsa-miR-433^brain	AUCAUGAUGGGCUCCUCGGUGU
miR-496	1195	1201	1A	hsa-miR-496	AUUACAUGGCCAAUCUC

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.