Gene Page: RBP5
Summary ?
GeneID | 83758 |
Symbol | RBP5 |
Synonyms | CRBP-III|CRBP3|CRBPIII |
Description | retinol binding protein 5 |
Reference | MIM:611866|HGNC:HGNC:15847|Ensembl:ENSG00000139194|HPRD:17961|Vega:OTTHUMG00000168165 |
Gene type | protein-coding |
Map location | 12p13.31 |
Pascal p-value | 0.021 |
Gene in Data Sources
Gene set name | Method of gene set | Description | Info |
---|---|---|---|
CV:PGCnp | Genome-wide Association Study | GWAS |
Section I. Genetics and epigenetics annotation
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
Top co-expressed genes in brain regions
Top 10 positively co-expressed genes | ||
Gene | Pearson's Correlation | Spearman's Correlation |
DPP8 | 0.88 | 0.84 |
SYNJ1 | 0.87 | 0.85 |
NCOA7 | 0.87 | 0.81 |
HSPA4L | 0.87 | 0.84 |
ARFGEF2 | 0.86 | 0.81 |
CDS1 | 0.86 | 0.83 |
FAM73A | 0.86 | 0.85 |
GLS | 0.85 | 0.79 |
MAP2K4 | 0.85 | 0.80 |
DDHD2 | 0.85 | 0.85 |
Top 10 negatively co-expressed genes | ||
Gene | Pearson's Correlation | Spearman's Correlation |
RPL35 | -0.43 | -0.49 |
SIGIRR | -0.42 | -0.49 |
RPL28 | -0.41 | -0.49 |
RPL36 | -0.41 | -0.46 |
RPL18 | -0.41 | -0.47 |
BCL7C | -0.40 | -0.47 |
RPL27 | -0.40 | -0.41 |
RPS16P1 | -0.40 | -0.48 |
RPL31 | -0.40 | -0.42 |
FAU | -0.40 | -0.39 |
Section V. Pathway annotation
Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
---|---|---|---|
PICCALUGA ANGIOIMMUNOBLASTIC LYMPHOMA UP | 205 | 140 | All SZGR 2.0 genes in this pathway |
LINDGREN BLADDER CANCER CLUSTER 2B | 392 | 251 | All SZGR 2.0 genes in this pathway |
LEE LIVER CANCER SURVIVAL UP | 185 | 112 | All SZGR 2.0 genes in this pathway |
CHIANG LIVER CANCER SUBCLASS PROLIFERATION DN | 179 | 97 | All SZGR 2.0 genes in this pathway |
YAMASHITA LIVER CANCER STEM CELL DN | 76 | 51 | All SZGR 2.0 genes in this pathway |
HOSHIDA LIVER CANCER SUBCLASS S3 | 266 | 180 | All SZGR 2.0 genes in this pathway |