Gene Page: BFSP2
Summary ?
| GeneID | 8419 |
| Symbol | BFSP2 |
| Synonyms | CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN |
| Description | beaded filament structural protein 2 |
| Reference | MIM:603212|HGNC:HGNC:1041|Ensembl:ENSG00000170819|HPRD:04444|Vega:OTTHUMG00000159719 |
| Gene type | protein-coding |
| Map location | 3q22.1 |
| Pascal p-value | 0.028 |
| eGene | Meta |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:PGCnp | Genome-wide Association Study | GWAS |
Section I. Genetics and epigenetics annotation
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
Top co-expressed genes in brain regions
| Top 10 positively co-expressed genes | ||
| Gene | Pearson's Correlation | Spearman's Correlation |
| FAM98C | 0.67 | 0.59 |
| TMEM42 | 0.64 | 0.58 |
| B9D1 | 0.64 | 0.59 |
| KIF12 | 0.63 | 0.59 |
| ISOC2 | 0.63 | 0.56 |
| ZNF771 | 0.62 | 0.60 |
| MAGIX | 0.62 | 0.59 |
| LRRC29 | 0.62 | 0.60 |
| HSD11B1L | 0.62 | 0.59 |
| AC018755.9 | 0.62 | 0.61 |
| Top 10 negatively co-expressed genes | ||
| Gene | Pearson's Correlation | Spearman's Correlation |
| MAP4K4 | -0.38 | -0.39 |
| ATAD2B | -0.36 | -0.36 |
| CCDC50 | -0.36 | -0.35 |
| ZNF286 | -0.36 | -0.29 |
| ZNF292 | -0.35 | -0.31 |
| LRCH1 | -0.35 | -0.32 |
| KCNRG | -0.35 | -0.30 |
| ZEB2 | -0.35 | -0.31 |
| C6orf204 | -0.35 | -0.33 |
| RNF182 | -0.35 | -0.37 |
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| PUJANA BRCA1 PCC NETWORK | 1652 | 1023 | All SZGR 2.0 genes in this pathway |
| MANTOVANI VIRAL GPCR SIGNALING DN | 49 | 37 | All SZGR 2.0 genes in this pathway |
| PENG GLUCOSE DEPRIVATION DN | 169 | 112 | All SZGR 2.0 genes in this pathway |
| IVANOVA HEMATOPOIESIS EARLY PROGENITOR | 532 | 309 | All SZGR 2.0 genes in this pathway |
| HARRIS BRAIN CANCER PROGENITORS | 44 | 23 | All SZGR 2.0 genes in this pathway |
| BROWNE HCMV INFECTION 1HR UP | 61 | 44 | All SZGR 2.0 genes in this pathway |
| GOBERT OLIGODENDROCYTE DIFFERENTIATION DN | 1080 | 713 | All SZGR 2.0 genes in this pathway |
| FOSTER KDM1A TARGETS UP | 266 | 142 | All SZGR 2.0 genes in this pathway |