Gene Page: TBRG1

Summary ?
GeneID84897
SymbolTBRG1
SynonymsNIAM|TB-5
Descriptiontransforming growth factor beta regulator 1
ReferenceMIM:610614|HGNC:HGNC:29551|Ensembl:ENSG00000154144|HPRD:15477|Vega:OTTHUMG00000153024
Gene typeprotein-coding
Map location11q24.2
Pascal p-value0.001
Sherlock p-value0.033
Fetal beta-0.992
eGeneMyers' cis & trans

Gene in Data Sources
Gene set name Method of gene setDescriptionInfo
CV:PGCnpGenome-wide Association StudyGWAS

Section I. Genetics and epigenetics annotation

@eQTL annotation

SNP IDChromosomePositioneGeneGene Entrez IDpvalueqvalueTSS distanceeQTL type
rs763641chr11123846625TBRG1848970cis
rs10751722chr127543522TBRG1848970.2trans
rs3769467chr2201205340TBRG1848970.03trans
rs3769461chr2201222657TBRG1848970.03trans
rs17007781chr4124977313TBRG1848970.06trans
rs2289256chr4187089132TBRG1848970.06trans
rs11793484chr9317239TBRG1848970.05trans
rs10970457chr9326183TBRG1848970.05trans
rs763641chr11123846625TBRG1848970.1trans
rs7933478chr11126004782TBRG1848970.12trans
rs7309022chr1292666566TBRG1848970.1trans
rs288438chr1598161777TBRG1848970.19trans
rs5998188chr2232344841TBRG1848970.16trans

Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression during devlopment (BrainCloud)

Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

No co-expressed genes in brain regions


Section V. Pathway annotation

Pathway namePathway size# SZGR 2.0 genes in pathwayInfo
GINESTIER BREAST CANCER 20Q13 AMPLIFICATION DN 180101All SZGR 2.0 genes in this pathway
RODRIGUES THYROID CARCINOMA POORLY DIFFERENTIATED DN 805505All SZGR 2.0 genes in this pathway
LASTOWSKA NEUROBLASTOMA COPY NUMBER DN 800473All SZGR 2.0 genes in this pathway
NUYTTEN NIPP1 TARGETS UP 769437All SZGR 2.0 genes in this pathway
RAMALHO STEMNESS UP 206118All SZGR 2.0 genes in this pathway
MARSON BOUND BY FOXP3 STIMULATED 1022619All SZGR 2.0 genes in this pathway
MARSON BOUND BY FOXP3 UNSTIMULATED 1229713All SZGR 2.0 genes in this pathway
PECE MAMMARY STEM CELL DN 14688All SZGR 2.0 genes in this pathway