Gene Page: TRPA1
Summary ?
GeneID | 8989 |
Symbol | TRPA1 |
Synonyms | ANKTM1|FEPS |
Description | transient receptor potential cation channel subfamily A member 1 |
Reference | MIM:604775|HGNC:HGNC:497|Ensembl:ENSG00000104321|HPRD:09208|Vega:OTTHUMG00000164516 |
Gene type | protein-coding |
Map location | 8q13 |
Pascal p-value | 0.375 |
eGene | Meta |
Gene in Data Sources
Gene set name | Method of gene set | Description | Info |
---|---|---|---|
CV:GWASdb | Genome-wide Association Studies | GWASdb records for schizophrenia | |
CV:PGCnp | Genome-wide Association Study | GWAS |
Section I. Genetics and epigenetics annotation
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
Top co-expressed genes in brain regions
Top 10 positively co-expressed genes | ||
Gene | Pearson's Correlation | Spearman's Correlation |
DVL3 | 0.97 | 0.97 |
EHMT2 | 0.97 | 0.97 |
WHSC2 | 0.97 | 0.97 |
RBM10 | 0.97 | 0.97 |
RBM15B | 0.96 | 0.96 |
U2AF2 | 0.96 | 0.96 |
DCAF15 | 0.96 | 0.95 |
AXIN1 | 0.96 | 0.96 |
NUP62 | 0.96 | 0.94 |
CSNK1E | 0.96 | 0.96 |
Top 10 negatively co-expressed genes | ||
Gene | Pearson's Correlation | Spearman's Correlation |
AF347015.31 | -0.77 | -0.90 |
AF347015.27 | -0.76 | -0.89 |
C5orf53 | -0.75 | -0.78 |
MT-CO2 | -0.75 | -0.89 |
AF347015.33 | -0.74 | -0.86 |
S100B | -0.73 | -0.82 |
MT-CYB | -0.73 | -0.86 |
HLA-F | -0.72 | -0.75 |
AF347015.8 | -0.71 | -0.87 |
COPZ2 | -0.71 | -0.80 |
Section V. Pathway annotation
Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
---|---|---|---|
SENGUPTA NASOPHARYNGEAL CARCINOMA WITH LMP1 UP | 408 | 247 | All SZGR 2.0 genes in this pathway |
BENPORATH SUZ12 TARGETS | 1038 | 678 | All SZGR 2.0 genes in this pathway |
BENPORATH EED TARGETS | 1062 | 725 | All SZGR 2.0 genes in this pathway |
NIKOLSKY BREAST CANCER 8Q12 Q22 AMPLICON | 132 | 82 | All SZGR 2.0 genes in this pathway |
ONDER CDH1 TARGETS 2 UP | 256 | 159 | All SZGR 2.0 genes in this pathway |
MARSON BOUND BY FOXP3 UNSTIMULATED | 1229 | 713 | All SZGR 2.0 genes in this pathway |
SMID BREAST CANCER LUMINAL B UP | 172 | 109 | All SZGR 2.0 genes in this pathway |
MIKKELSEN ES ICP WITH H3K4ME3 | 718 | 401 | All SZGR 2.0 genes in this pathway |
ZWANG TRANSIENTLY UP BY 1ST EGF PULSE ONLY | 1839 | 928 | All SZGR 2.0 genes in this pathway |